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Aliases for ST20-AS1 Gene

Subcategory (RNA class) for ST20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST20-AS1 Gene

  • ST20 Antisense RNA 1 2 3 4 5
  • C15orf37 3 4
  • Chromosome 15 Open Reading Frame 37 2
  • ST20 Antisense Gene Protein 1 4

External Ids for ST20-AS1 Gene

Previous HGNC Symbols for ST20-AS1 Gene

  • C15orf37

Summaries for ST20-AS1 Gene

GeneCards Summary for ST20-AS1 Gene

ST20-AS1 (ST20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST20-AS1 Gene

Genomics for ST20-AS1 Gene

Regulatory Elements for ST20-AS1 Gene

Enhancers for ST20-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G080838 1.5 FANTOM5 ENCODE dbSUPER 5 +916.3 916341 1.8 TBP FOXA2 ZSCAN4 ARID4B RAD21 ZNF48 RARA TCF12 GATA4 CREM ST20-AS1 IL16 MIR549A GC15P080826
GH15G080889 0.6 dbSUPER 5.3 +967.8 967766 2.5 CTCF ZSCAN4 CEBPB REST MNT RAD21 ARNT2 CEMIP ST20-AS1 GC15P080893 GC15M080848
GH15G079921 1.1 ENCODE 0.7 +0.6 573 2.9 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 ZNF207 MTHFS ST20 BCL2A1 ST20-AS1 ST20-MTHFS
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST20-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ST20-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000079878 629 2401 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 ZNF207

Genomic Location for ST20-AS1 Gene

Chromosome:
15
Start:
79,922,771 bp from pter
End:
79,926,993 bp from pter
Size:
4,223 bases
Orientation:
Plus strand

Genomic View for ST20-AS1 Gene

Genes around ST20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST20-AS1 Gene

Proteins for ST20-AS1 Gene

  • Protein details for ST20-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBB2-STAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ST20-AS1
    Protein Accession:
    Q8NBB2

    Protein attributes for ST20-AS1 Gene

    Size:
    130 amino acids
    Molecular mass:
    13907 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ST20-AS1 Gene

Post-translational modifications for ST20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST20-AS1 Gene

Domains & Families for ST20-AS1 Gene

Protein Domains for ST20-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ST20-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ST20-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ST20-AS1 Gene

Function for ST20-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST20-AS1 Gene

Localization for ST20-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ST20-AS1 Gene

Pathways & Interactions for ST20-AS1 Gene

SuperPathways for ST20-AS1 Gene

No Data Available

Interacting Proteins for ST20-AS1 Gene

Gene Ontology (GO) - Biological Process for ST20-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST20-AS1 Gene

Drugs & Compounds for ST20-AS1 Gene

No Compound Related Data Available

Transcripts for ST20-AS1 Gene

mRNA/cDNA for ST20-AS1 Gene

(1) REFSEQ mRNAs :
(19) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST20-AS1 Gene

No ASD Table

Relevant External Links for ST20-AS1 Gene

GeneLoc Exon Structure for
ST20-AS1
ECgene alternative splicing isoforms for
ST20-AS1

Expression for ST20-AS1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ST20-AS1 Gene



Protein tissue co-expression partners for ST20-AS1 Gene

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST20-AS1 Gene

Orthologs for ST20-AS1 Gene

Evolution for ST20-AS1 Gene

ENSEMBL:
Gene Tree for ST20-AS1 (if available)
TreeFam:
Gene Tree for ST20-AS1 (if available)

No data available for Orthologs for ST20-AS1 Gene

Paralogs for ST20-AS1 Gene

No data available for Paralogs for ST20-AS1 Gene

Variants for ST20-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST20-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1001432502 -- 79,921,015(+) ACCTG(A/G/T)TAATA intron-variant, upstream-variant-2KB
rs1001900641 -- 79,922,628(+) CCTAA(A/T)GGGGA intron-variant, upstream-variant-2KB
rs1002169016 -- 79,923,574(+) CACGC(C/T)GCTCA nc-transcript-variant, upstream-variant-2KB
rs1002839337 -- 79,922,310(+) TATAA(G/T)AAAAT intron-variant, upstream-variant-2KB
rs1003008245 -- 79,921,013(+) TCACC(G/T)GGTAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ST20-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv155n21 CNV loss 19592680
esv2660680 CNV deletion 23128226
esv3581779 CNV loss 25503493
esv3637009 CNV loss 21293372
esv3637012 CNV loss 21293372
nsv833065 CNV loss 17160897
nsv833066 CNV loss 17160897

Relevant External Links for ST20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST20-AS1 Gene

Disorders for ST20-AS1 Gene

Relevant External Links for ST20-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST20-AS1

No disorders were found for ST20-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST20-AS1 Gene

Publications for ST20-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ST20-AS1 Gene

Sources for ST20-AS1 Gene

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