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ST20 Gene

protein-coding   GIFtS: 37
GCID: GC15M080191

Suppressor Of Tumorigenicity 20

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Suppressor Of Tumorigenicity 201 2     HCCS13
Human Cervical Cancer Suppressor Gene 1 Protein2 3     KIAA08075
HCCS-12 3     MAST25
Cervical Cancer Suppressor-12     MAST2055
Suppressor Of Tumorigenicity 20 Protein2     

External Ids:    HGNC: 335201   Entrez Gene: 4004102   Ensembl: ENSG000001809537   OMIM: 6122575   UniProtKB: Q9HBF53   

Export aliases for ST20 gene to outside databases

Previous GC identifers: GC15M077980 GC15M056949


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ST20 Gene:
ST20 (suppressor of tumorigenicity 20) is a protein-coding gene. Diseases associated with ST20 include cervical cancer, and cervicitis.

UniProtKB/Swiss-Prot: ST20_HUMAN, Q9HBF5
Function: May act as a tumor suppressor. Promotes apoptosis of cancer cells




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the ST20 gene promoter:
         E2F-4   E2F-3a   NF-1   E2F-1   E2F   E2F-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidST20 promoter sequence
   Search Chromatin IP Primers for ST20

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ST20


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q25.1   Ensembl cytogenetic band:  15q25.1   HGNC cytogenetic band: 15q25.1

ST20 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ST20 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M080191:  view genomic region     (about GC identifiers)

Start:
80,191,182 bp from pter      End:
80,216,096 bp from pter
Size:
24,915 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ST20_HUMAN, Q9HBF5 (See protein sequence)
Recommended Name: Suppressor of tumorigenicity 20 protein  
Size: 79 amino acids; 9024 Da

Explore the universe of human proteins at neXtProt for ST20: NX_Q9HBF5

Explore proteomics data for ST20 at MOPED


See ST20 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (3 alternative transcripts): 
NP_001094349.1  NP_001094350.1  NP_001186686.1  

ENSEMBL proteins: 
 ENSP00000457965   ENSP00000453502   ENSP00000453693  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR026298 Blc2_fam
 IPR026301 ST20

Graphical View of Domain Structure for InterPro Entry Q9HBF5

ProtoNet protein and cluster: Q9HBF5


ST20 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: ST20_HUMAN, Q9HBF5
Function: May act as a tumor suppressor. Promotes apoptosis of cancer cells

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0042803protein homodimerization activity IBA--
GO:0046982protein heterodimerization activity IBA--
     
ST20 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular3
cytosol1
mitochondrion1
nucleus1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005741mitochondrial outer membrane IBA--

ST20 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for ST20 About    
See pathways by source

SuperPathContained pathways About
1folate polyglutamylation
folate transformations0.43


1 BioSystems Pathway for ST20
    folate transformations


    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ST20
Interactions:

    Search GeneGlobe Interaction Network for ST20

Gene Ontology (GO): 4 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0008630intrinsic apoptotic signaling pathway in response to DNA damage IBA--
GO:0043066negative regulation of apoptotic process IBA--
GO:0097192extrinsic apoptotic signaling pathway in absence of ligand IBA--
GO:2001243negative regulation of intrinsic apoptotic signaling pathway IBA--

ST20 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for ST20



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for ST20 gene (3 alternative transcripts): 
NM_001100879.1  NM_001100880.2  NM_001199757.1  

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000562759(uc021srs.1 uc021srt.1) ENST00000478497(uc002bez.4)
ENST00000485386(uc021sru.1 uc002bfa.4)
miRNA
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Selected AceView cDNA sequences (see all 307):

AA700046 AW161062 BG939662 AI754307 BQ777753 AI674201 BM823149 CA848720 
AA668859 AI373513 AI632437 BM831179 AW612037 AI129743 BM674537 BU077484 
BM510737 BM769396 AI090295 AA807026 BM450865 R14575 BM830783 AL109714 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ST20 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTGGAGTGC
ST20 Expression
About this image

ST20 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

ST20 Protein Expression

UniProtKB/Swiss-Prot: ST20_HUMAN, Q9HBF5
Tissue specificity: Expressed in leukocytes, lung, spleen, liver, heart, kidney, muscle and uterine cervix.
Down-regulated in cervical cancer

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ST20

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and chimp.

Orthologs for ST20 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chimpanzee
(Pan troglodytes)
Mammalia ST201 suppressor of tumorigenicity 20 99.58(n)
98.73(a)
  100609733  XM_003314813.2  XP_003314861.1 


ENSEMBL Gene Tree for ST20 (if available)
TreeFam Gene Tree for ST20 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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8 SNPs for ST20    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 15 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1496360341,2
--80217764(+) AGTGAC/TCCAGT 2 -- us2k10--------
rs1444120381,2
--80217773(+) GTTCTA/TTTACA 2 -- us2k10--------
rs786456491,2
C,F--80217842(+) CTTAGT/CTTCCT 2 -- us2k11Minor allele frequency- C:0.05WA 118
rs1468155441,2
C--80218039(+) ATTAT-/TTTG  
        
TTTGT
2 -- us2k10--------
rs72571,2,4
----see VAR_0440342 mis40--------
rs3734098301,2
----80218042(+) TGTTT-/GTTT  
        
TTGTC
2 -- us2k10--------
rs784861651,2
----80218049(+) TGTTT-/GTTT  
        
TTGTC
2 -- us2k10--------
rs2002086471,2
----80217711(+) GCTTCA/GGCCTC 2 -- us2k10--------

HapMap Linkage Disequilibrium report for ST20 (80191182 - 80216096 bp)

Structural Variations
     Database of Genomic Variants (DGV) 7 variations for ST20:    About this table    
Variant IDTypeSubtypePubMed ID
esv2672391CNV Deletion23128226
esv2660680CNV Deletion23128226
dgv155n21CNV Loss19592680
nsv833065CNV Loss17160897
nsv833066CNV Loss17160897
nsv510406CNV Loss20534489
nsv904435CNV Gain21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 612257    OMIM disorders: --

3 diseases for ST20:    
About MalaCards
cervical cancer    cervicitis    brugada syndrome

1 disease from the University of Copenhagen DISEASES database for ST20:
Brugada syndrome

ST20 for disorders           About GeneDecksing


Export disorders for ST20 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ST20 gene integrated from 10 sources:
(articles sorted by number of sources associating them with ST20)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Candidate tumor suppressor, HCCS-1, is downregulated in human cancers and induces apoptosis in cervical cancer. (PubMed id 11857354)1, 2 Kim T.E.... Kim J.W. (Int. J. Cancer 2002)
  2. Genome-wide association study of chronic periodontitis in a general German population. (PubMed id 24024966)1 Teumer A....Kocher T. (J. Clin. Periodontol. 2013)
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (PLoS ONE 2010)
  4. Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171)2 Zody M.C....Nusbaum C. (Nature 2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 400410 HGNC: 33520 AceView: MTHFS Ensembl:ENSG00000180953 euGenes: HUgn400410
ECgene: ST20 H-InvDB: ST20

(According to HUGE)
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HUGE: KIAA0807

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ST20 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ST20 gene:
Search GeneIP for patents involving ST20

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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