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Aliases for SSX9 Gene

Aliases for SSX9 Gene

  • Synovial Sarcoma, X Breakpoint 9 2 3 5

External Ids for SSX9 Gene

Previous GeneCards Identifiers for SSX9 Gene

  • GC0XU900003
  • GC0XM046981
  • GC0XM047201
  • GC0XM047202
  • GC0XM047911
  • GC0XM048039
  • GC0XM048154

Summaries for SSX9 Gene

Entrez Gene Summary for SSX9 Gene

  • The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. SSX1, SSX2 and SSX4 genes have been involved in the t(X;18) translocation characteristically found in all synovial sarcomas. This gene appears not to be involved in this type of chromosome translocation. [provided by RefSeq, Jul 2008]

GeneCards Summary for SSX9 Gene

SSX9 (Synovial Sarcoma, X Breakpoint 9) is a Pseudogene. GO annotations related to this gene include nucleic acid binding.

UniProtKB/Swiss-Prot for SSX9 Gene

  • Could act as a modulator of transcription.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSX9 Gene

Genomics for SSX9 Gene

Regulatory Elements for SSX9 Gene


Genomic Location for SSX9 Gene

Chromosome:
X
Start:
48,296,816 bp from pter
End:
48,306,179 bp from pter
Size:
9,364 bases
Orientation:
Minus strand

Genomic View for SSX9 Gene

Genes around SSX9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSX9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSX9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSX9 Gene

Proteins for SSX9 Gene

  • Protein details for SSX9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTT3-SSX9_HUMAN
    Recommended name:
    Protein SSX9
    Protein Accession:
    Q7RTT3

    Protein attributes for SSX9 Gene

    Size:
    188 amino acids
    Molecular mass:
    21553 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSX9 Gene

Proteomics data for SSX9 Gene at MOPED

Post-translational modifications for SSX9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SSX9 Gene

Domains & Families for SSX9 Gene

Protein Domains for SSX9 Gene

Suggested Antigen Peptide Sequences for SSX9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7RTT3

UniProtKB/Swiss-Prot:

SSX9_HUMAN :
  • Contains 1 KRAB-related domain.
  • Belongs to the SSX family.
Domain:
  • Contains 1 KRAB-related domain.
Family:
  • Belongs to the SSX family.
genes like me logo Genes that share domains with SSX9: view

No data available for Gene Families for SSX9 Gene

Function for SSX9 Gene

Molecular function for SSX9 Gene

UniProtKB/Swiss-Prot Function:
Could act as a modulator of transcription.

Phenotypes for SSX9 Gene

GenomeRNAi human phenotypes for SSX9:
genes like me logo Genes that share phenotypes with SSX9: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSX9 Gene

Localization for SSX9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SSX9 Gene COMPARTMENTS Subcellular localization image for SSX9 gene
Compartment Confidence
nucleus 5
cytosol 2
golgi apparatus 1
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SSX9 Gene

Pathways & Interactions for SSX9 Gene

SuperPathways for SSX9 Gene

No Data Available

Interacting Proteins for SSX9 Gene

Gene Ontology (GO) - Biological Process for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903507 negative regulation of nucleic acid-templated transcription IBA --
genes like me logo Genes that share ontologies with SSX9: view

No data available for Pathways by source and SIGNOR curated interactions for SSX9 Gene

Drugs & Compounds for SSX9 Gene

No Compound Related Data Available

Transcripts for SSX9 Gene

mRNA/cDNA for SSX9 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSX9 Gene

No ASD Table

Relevant External Links for SSX9 Gene

GeneLoc Exon Structure for
SSX9
ECgene alternative splicing isoforms for
SSX9

Expression for SSX9 Gene

mRNA expression in normal human tissues for SSX9 Gene

mRNA differential expression in normal tissues according to GTEx for SSX9 Gene

This gene is overexpressed in Testis (x53.0).

mRNA Expression by UniProt/SwissProt for SSX9 Gene

Q7RTT3-SSX9_HUMAN
Tissue specificity: Not detected in any normal or tumor tissues.
genes like me logo Genes that share expression patterns with SSX9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for SSX9 Gene

Orthologs for SSX9 Gene

Evolution for SSX9 Gene

ENSEMBL:
Gene Tree for SSX9 (if available)
TreeFam:
Gene Tree for SSX9 (if available)

No data available for Orthologs for SSX9 Gene

Paralogs for SSX9 Gene

(17) SIMAP similar genes for SSX9 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SSX9: view

No data available for Paralogs for SSX9 Gene

Variants for SSX9 Gene

Sequence variations from dbSNP and Humsavar for SSX9 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs4598385 - 48,303,670(+) ATTAC(A/C/G)CATGA nc-transcript-variant
rs6609702 - 48,301,754(+) CTGAG(A/G)ACGTT nc-transcript-variant
rs3125188 -- 48,304,175(+) AGGAA(A/T)AGGGA intron-variant
rs3125189 -- 48,304,271(+) CATAG(A/C)TGATT nc-transcript-variant
rs3885827 -- 48,304,451(+) ATTCC(A/G)TCCTG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SSX9 Gene

Disorders for SSX9 Gene

Relevant External Links for SSX9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSX9

No disorders were found for SSX9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSX9 Gene

Publications for SSX9 Gene

  1. The SSX gene family: characterization of 9 complete genes. (PMID: 12216073) Gure A.O. … Chen Y.-T. (Int. J. Cancer 2002) 2 3 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SSX9 Gene

Sources for SSX9 Gene

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