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Aliases for SSX9 Gene

Aliases for SSX9 Gene

  • Synovial Sarcoma, X Breakpoint 9 2 3

External Ids for SSX9 Gene

Summaries for SSX9 Gene

Entrez Gene Summary for SSX9 Gene

  • The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. SSX1, SSX2 and SSX4 genes have been involved in the t(X;18) translocation characteristically found in all synovial sarcomas. This gene appears not to be involved in this type of chromosome translocation. [provided by RefSeq, Jul 2008]

GeneCards Summary for SSX9 Gene

SSX9 (Synovial Sarcoma, X Breakpoint 9) is a Pseudogene. Diseases associated with SSX9 include sarcoma. GO annotations related to this gene include nucleic acid binding.

UniProtKB/Swiss-Prot for SSX9 Gene

  • Could act as a modulator of transcription

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSX9 Gene

Genomics for SSX9 Gene

Genomic Location for SSX9 Gene

Start:
48,296,816 bp from pter
End:
48,306,179 bp from pter
Size:
9,364 bases
Orientation:
Minus strand

Genomic View for SSX9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SSX9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSX9 Gene

Regulatory Elements for SSX9 Gene

Proteins for SSX9 Gene

  • Protein details for SSX9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTT3-SSX9_HUMAN
    Recommended name:
    Protein SSX9
    Protein Accession:
    Q7RTT3
    Secondary Accessions:

    Protein attributes for SSX9 Gene

    Size:
    188 amino acids
    Molecular mass:
    21553 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSX9 Gene

Proteomics data for SSX9 Gene at MOPED

Post-translational modifications for SSX9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SSX9 Gene

Domains for SSX9 Gene

Protein Domains for SSX9 Gene

UniProtKB/Swiss-Prot:

SSX9_HUMAN
Domain:
  • Contains 1 KRAB-related domain.:
    • Q7RTT3
Family:
  • Belongs to the SSX family.:
    • Q7RTT3
genes like me logo Genes that share domains with SSX9: view

No data available for Gene Families for SSX9 Gene

Function for SSX9 Gene

Molecular function for SSX9 Gene

UniProtKB/Swiss-Prot Function: Could act as a modulator of transcription

Gene Ontology (GO) - Molecular Function for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with SSX9: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SSX9 Gene

Localization for SSX9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SSX9 Gene COMPARTMENTS Subcellular localization image for SSX9 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1
mitochondrion 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with SSX9: view

Pathways for SSX9 Gene

SuperPathways for SSX9 Gene

No Data Available

Interacting Proteins for SSX9 Gene

Gene Ontology (GO) - Biological Process for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with SSX9: view

No data available for Pathways by source for SSX9 Gene

Transcripts for SSX9 Gene

mRNA/cDNA for SSX9 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSX9 Gene

No ASD Table

Relevant External Links for SSX9 Gene

GeneLoc Exon Structure for
SSX9
ECgene alternative splicing isoforms for
SSX9

Expression for SSX9 Gene

mRNA expression in normal human tissues for SSX9 Gene

mRNA differential expression in normal tissues according to GTEx for SSX9 Gene

This gene is overexpressed in Testis (53.0).

mRNA Expression by UniProt/SwissProt for SSX9 Gene

Q7RTT3-SSX9_HUMAN
Tissue specificity: Not detected in any normal or tumor tissues.
genes like me logo Genes that share expressions with SSX9: view

Orthologs for SSX9 Gene

Evolution for SSX9 Gene

ENSEMBL:
Gene Tree for SSX9 (if available)
TreeFam:
Gene Tree for SSX9 (if available)

No data available for Orthologs for SSX9 Gene

Paralogs for SSX9 Gene

Selected SIMAP similar genes for SSX9 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SSX9: view

No data available for Paralogs for SSX9 Gene

Variants for SSX9 Gene

Sequence variations from dbSNP and Humsavar for SSX9 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs3125188 -- 48,304,175(+) AGGAA(A/T)AGGGA intron-variant
rs3125189 -- 48,304,271(+) CATAG(A/C)TGATT nc-transcript-variant
rs3885827 -- 48,304,451(+) ATTCC(A/G)TCCTG intron-variant
rs3901052 -- 48,304,282(+) TTCTC(C/T)GAGGA nc-transcript-variant
rs4370660 -- 48,306,901(+) CCACT(A/C)ATAtt upstream-variant-2KB

Relevant External Links for SSX9 Gene

HapMap Linkage Disequilibrium report
SSX9

No data available for Structural Variations from Database of Genomic Variants (DGV) for SSX9 Gene

Disorders for SSX9 Gene

(1) MalaCards Diseases for SSX9 Gene

Search for SSX9 Gene in MalaCards »
genes like me logo Genes that share disorders with SSX9: view

No data available for UniProtKB/Swiss-Prot for SSX9 Gene

Publications for SSX9 Gene

  1. The SSX gene family: characterization of 9 complete genes. (PMID: 12216073) Gure A.O. … Chen Y.-T. (Int. J. Cancer 2002) 2 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SSX9 Gene

Sources for SSX9 Gene

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