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Aliases for SSUH2 Gene

Aliases for SSUH2 Gene

  • Ssu-2 Homolog (C. Elegans) 2 3
  • Protein Ssu-2 Homolog 3 4
  • C3orf32 3 4
  • Chromosome 3 Open Reading Frame 32 2
  • Protein SSUH2 Homolog 3
  • Fls485 3
  • SSU-2 3

External Ids for SSUH2 Gene

Previous Symbols for SSUH2 Gene

  • C3orf32

Summaries for SSUH2 Gene

GeneCards Summary for SSUH2 Gene

SSUH2 (Ssu-2 Homolog (C. Elegans)) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSUH2 Gene

Genomics for SSUH2 Gene

Genomic Location for SSUH2 Gene

Start:
8,619,400 bp from pter
End:
8,745,040 bp from pter
Size:
125,641 bases
Orientation:
Minus strand

Genomic View for SSUH2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SSUH2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSUH2 Gene

No data available for Regulatory Elements for SSUH2 Gene

Proteins for SSUH2 Gene

  • Protein details for SSUH2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2M2-SSUH2_HUMAN
    Recommended name:
    Protein SSUH2 homolog
    Protein Accession:
    Q9Y2M2
    Secondary Accessions:
    • A6NFA9
    • B3KS84
    • B7Z6E3
    • F5H2S5
    • Q7Z7K4

    Protein attributes for SSUH2 Gene

    Size:
    353 amino acids
    Molecular mass:
    39845 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH52614.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for SSUH2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SSUH2 Gene

Proteomics data for SSUH2 Gene at MOPED

Post-translational modifications for SSUH2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SSUH2 Gene

Domains for SSUH2 Gene

Protein Domains for SSUH2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SSUH2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSUH2 Gene

Function for SSUH2 Gene

Molecular function for SSUH2 Gene

UniProtKB/Swiss-Prot Induction: Induced during epithelial differentiation.

Gene Ontology (GO) - Molecular Function for SSUH2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031072 heat shock protein binding --
GO:0051082 unfolded protein binding --
genes like me logo Genes that share ontologies with SSUH2: view

Phenotypes for SSUH2 Gene

GenomeRNAi human phenotypes for SSUH2:
genes like me logo Genes that share phenotypes with SSUH2: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SSUH2 Gene

Localization for SSUH2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SSUH2 Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for SSUH2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 20205943
genes like me logo Genes that share ontologies with SSUH2: view

No data available for Subcellular locations from COMPARTMENTS for SSUH2 Gene

Pathways for SSUH2 Gene

SuperPathways for SSUH2 Gene

No Data Available

Interacting Proteins for SSUH2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000324551%0d%0a9606.ENSP00000360532%0d%0a
Selected Interacting proteins: Q9Y2M2-SSUH2_HUMAN ENSP00000324551 for SSUH2 Gene via MINT STRING

Gene Ontology (GO) - Biological Process for SSUH2 Gene

None

No data available for Pathways by source for SSUH2 Gene

Transcripts for SSUH2 Gene

Unigene Clusters for SSUH2 Gene

Ssu-2 homolog (C. elegans):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SSUH2 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b · 16c ·
SP1: - - - - - - - -
SP2: - - - - -
SP3: - - - - - - - - - -
SP4: - - - - - - - - -
SP5:
SP6: - - - -
SP7:
SP8:

ExUns: 16d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:

Relevant External Links for SSUH2 Gene

GeneLoc Exon Structure for
SSUH2
ECgene alternative splicing isoforms for
SSUH2

Expression for SSUH2 Gene

mRNA expression in normal human tissues for SSUH2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SSUH2 Gene

This gene is overexpressed in Testis (16.9) and Small Intestine - Terminal Ileum (6.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SSUH2 Gene

SOURCE GeneReport for Unigene cluster for SSUH2 Gene Hs.740735

mRNA Expression by UniProt/SwissProt for SSUH2 Gene

Q9Y2M2-SSUH2_HUMAN
Tissue specificity: Expressed in enterocytes of small and large intestinal mucosa (at protein level). Expressed in enterocytes, chromaffine and interstitial cells.
genes like me logo Genes that share expressions with SSUH2: view

Orthologs for SSUH2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SSUH2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SSUH2 35
  • 94.46 (n)
  • 92.71 (a)
SSUH2 36
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C22H3orf32 35
  • 83.82 (n)
  • 85.07 (a)
SSUH2 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SSUH2 35
  • 88.36 (n)
  • 88.27 (a)
SSUH2 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ssu2 35
  • 81.65 (n)
  • 81.65 (a)
Ssu2 16
Ssu2 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SSUH2 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SSUH2 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ssuh2 35
  • 82.09 (n)
  • 81.82 (a)
lizard
(Anolis carolinensis)
Reptilia SSUH2 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ssuh2 35
  • 48.81 (n)
  • 39.83 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC101882914 35
  • 52.85 (n)
  • 45.38 (a)
SSUH2 36
  • 48 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea ssu-2 36
  • 22 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 27 (a)
OneToOne
Species with no ortholog for SSUH2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SSUH2 Gene

ENSEMBL:
Gene Tree for SSUH2 (if available)
TreeFam:
Gene Tree for SSUH2 (if available)

Paralogs for SSUH2 Gene

No data available for Paralogs for SSUH2 Gene

Variants for SSUH2 Gene

Sequence variations from dbSNP and Humsavar for SSUH2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs84141 -- 8,646,649(+) CGTAC(A/G)GAAGT upstream-variant-2KB, intron-variant
rs125698 -- 8,663,540(+) TCGGG(G/T)TCAGG intron-variant
rs151714 -- 8,647,375(+) CTTTG(A/G)AAGAA intron-variant
rs151732 -- 8,643,651(+) ATATC(A/G)ACATT intron-variant
rs151733 -- 8,643,708(+) CAAGT(C/T)TGGTG intron-variant

Relevant External Links for SSUH2 Gene

HapMap Linkage Disequilibrium report
SSUH2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SSUH2 Gene

Disorders for SSUH2 Gene

No disorders were found for SSUH2 Gene.

No data available for UniProtKB/Swiss-Prot for SSUH2 Gene

Publications for SSUH2 Gene

  1. Small intestinal mucosa expression of putative chaperone fls485. (PMID: 20205943) Reinartz A. … Gassler N. (BMC Gastroenterol. 2010) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K. … Sugano S. (Gene 1994) 3

Products for SSUH2 Gene

Sources for SSUH2 Gene

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