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Aliases for SSTR5-AS1 Gene

Subcategory (RNA class) for SSTR5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SSTR5-AS1 Gene

  • SSTR5 Antisense RNA 1 2 3 5
  • SSTR5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SSTR5-AS1 Gene

Previous GeneCards Identifiers for SSTR5-AS1 Gene

  • GC16M001117

Summaries for SSTR5-AS1 Gene

GeneCards Summary for SSTR5-AS1 Gene

SSTR5-AS1 (SSTR5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSTR5-AS1 Gene

Genomics for SSTR5-AS1 Gene

Regulatory Elements for SSTR5-AS1 Gene

Enhancers for SSTR5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F001081 1.3 FANTOM5 ENCODE 9.2 -4.3 -4343 2.8 MLX ZFP64 ARID4B DMAP1 ZNF48 ZNF121 SLC30A9 GLIS2 FOS SP5 IFT140 LOC105371038 ENSG00000269482 HN1L NME3 CCDC154 ENSG00000262528 ENSG00000268836 EME2 SSTR5-AS1
GH16F001078 1.2 Ensembl ENCODE 8.1 +0.1 78 1.2 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 BRCA1 SLC30A9 FOS IFT140 ENSG00000269482 LOC105371038 HN1L NME3 CCDC154 ENSG00000262528 ENSG00000268836 EME2 SSTR5-AS1
GH16F001088 0.6 Ensembl ENCODE 0.4 -11.6 -11576 3.0 MLX ARID4B DMAP1 ZNF48 SP5 MXD4 REST PPARG KAT8 SSRP1 IFT140 NME3 ENSG00000262528 ENSG00000260646 HN1L ENSG00000268836 HBA1 C1QTNF8 SSTR5-AS1
GH16F001093 0.2 ENCODE 0.4 -14.8 -14845 0.2 RING1 KLF1 ESRRA ARID4B DMAP1 HBP1 HIC1 ZFHX2 ADNP NR2F6 IFT140 LOC105371038 HN1L NME3 CCDC154 ENSG00000262528 ENSG00000268836 EME2 C1QTNF8 SSTR5-AS1
GH16F001094 0.6 ENCODE 0.3 -15.5 -15495 0.1 RNF2 SP2 REST ZNF600 KDM1A C1QTNF8 SSTR5-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SSTR5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SSTR5-AS1 Gene

Chromosome:
16
Start:
1,064,081 bp from pter
End:
1,078,731 bp from pter
Size:
14,651 bases
Orientation:
Minus strand

Genomic View for SSTR5-AS1 Gene

Genes around SSTR5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSTR5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSTR5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSTR5-AS1 Gene

Proteins for SSTR5-AS1 Gene

Post-translational modifications for SSTR5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSTR5-AS1 Gene

Domains & Families for SSTR5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSTR5-AS1 Gene

Function for SSTR5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSTR5-AS1 Gene

Localization for SSTR5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SSTR5-AS1 Gene

Pathways & Interactions for SSTR5-AS1 Gene

SuperPathways for SSTR5-AS1 Gene

No Data Available

Interacting Proteins for SSTR5-AS1 Gene

Gene Ontology (GO) - Biological Process for SSTR5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSTR5-AS1 Gene

Transcripts for SSTR5-AS1 Gene

mRNA/cDNA for SSTR5-AS1 Gene

Unigene Clusters for SSTR5-AS1 Gene

SSTR5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SSTR5-AS1 Gene

No ASD Table

Relevant External Links for SSTR5-AS1 Gene

GeneLoc Exon Structure for
SSTR5-AS1
ECgene alternative splicing isoforms for
SSTR5-AS1

Expression for SSTR5-AS1 Gene

mRNA expression in normal human tissues for SSTR5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SSTR5-AS1 Gene

This gene is overexpressed in Adrenal Gland (x14.2), Heart - Atrial Appendage (x9.4), and Heart - Left Ventricle (x6.0).

SOURCE GeneReport for Unigene cluster for SSTR5-AS1 Gene:

Hs.250557
genes like me logo Genes that share expression patterns with SSTR5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SSTR5-AS1 Gene

Orthologs for SSTR5-AS1 Gene

Evolution for SSTR5-AS1 Gene

ENSEMBL:
Gene Tree for SSTR5-AS1 (if available)
TreeFam:
Gene Tree for SSTR5-AS1 (if available)

No data available for Orthologs for SSTR5-AS1 Gene

Paralogs for SSTR5-AS1 Gene

No data available for Paralogs for SSTR5-AS1 Gene

Variants for SSTR5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSTR5-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs121917877 other 1,079,586(+) TGCGG(C/T)GGCGC upstream-variant-2KB, reference, missense
rs10664241 -- 1,068,403(+) GACCT(-/GTC)GTCCC intron-variant
rs111248593 -- 1,078,260(+) GGGCC(A/G)ACGGG intron-variant, upstream-variant-2KB
rs111339677 -- 1,066,011(+) TTCCC(A/G)TGGCG nc-transcript-variant
rs111426879 -- 1,079,402(+) TTCGC(A/G)GACGT upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SSTR5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2691n100 CNV gain 25217958
dgv2692n100 CNV gain 25217958
dgv777e212 CNV loss 25503493
esv2422427 CNV duplication 17116639
esv2750294 CNV deletion 23290073
esv2763125 CNV loss 21179565
esv3637602 CNV loss 21293372
nsv1046885 CNV gain 25217958
nsv1144750 CNV deletion 24896259
nsv1160327 CNV deletion 26073780
nsv428316 CNV gain+loss 18775914
nsv457315 CNV gain 19166990
nsv457323 CNV loss 19166990
nsv471066 CNV loss 18288195
nsv471067 CNV gain 18288195
nsv523609 CNV loss 19592680
nsv571046 CNV gain 21841781
nsv571092 CNV gain 21841781
nsv571099 CNV loss 21841781
nsv571100 CNV loss 21841781
nsv571101 CNV gain 21841781
nsv833116 CNV loss 17160897
nsv9329 CNV gain 18304495
nsv952898 CNV deletion 24416366

Relevant External Links for SSTR5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSTR5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSTR5-AS1 Gene

Disorders for SSTR5-AS1 Gene

Relevant External Links for SSTR5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSTR5-AS1

No disorders were found for SSTR5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSTR5-AS1 Gene

Publications for SSTR5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SSTR5-AS1 Gene

Sources for SSTR5-AS1 Gene

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