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Aliases for SSTR5-AS1 Gene

Subcategory (RNA class) for SSTR5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SSTR5-AS1 Gene

  • SSTR5 Antisense RNA 1 2 3
  • SSTR5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SSTR5-AS1 Gene

ORGUL Members for SSTR5-AS1 Gene

Summaries for SSTR5-AS1 Gene

GeneCards Summary for SSTR5-AS1 Gene

SSTR5-AS1 (SSTR5 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSTR5-AS1 Gene

Genomics for SSTR5-AS1 Gene

Genomic Location for SSTR5-AS1 Gene

Start:
1,064,081 bp from pter
End:
1,078,731 bp from pter
Size:
14,651 bases
Orientation:
Minus strand

Genomic View for SSTR5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SSTR5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSTR5-AS1 Gene

No data available for Regulatory Elements for SSTR5-AS1 Gene

Proteins for SSTR5-AS1 Gene

Post-translational modifications for SSTR5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSTR5-AS1 Gene

Domains for SSTR5-AS1 Gene

Gene Families for SSTR5-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SSTR5-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SSTR5-AS1 Gene

Function for SSTR5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SSTR5-AS1 Gene

Localization for SSTR5-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SSTR5-AS1 Gene

Pathways for SSTR5-AS1 Gene

SuperPathways for SSTR5-AS1 Gene

No Data Available

Interacting Proteins for SSTR5-AS1 Gene

Gene Ontology (GO) - Biological Process for SSTR5-AS1 Gene

None

No data available for Pathways by source for SSTR5-AS1 Gene

Transcripts for SSTR5-AS1 Gene

mRNA/cDNA for SSTR5-AS1 Gene

Unigene Clusters for SSTR5-AS1 Gene

SSTR5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SSTR5-AS1 Gene

No ASD Table

Relevant External Links for SSTR5-AS1 Gene

GeneLoc Exon Structure for
SSTR5-AS1
ECgene alternative splicing isoforms for
SSTR5-AS1

Expression for SSTR5-AS1 Gene

mRNA expression in normal human tissues for SSTR5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SSTR5-AS1 Gene

This gene is overexpressed in Adrenal Gland (14.2), Heart - Atrial Appendage (9.4), and Heart - Left Ventricle (6.0).

SOURCE GeneReport for Unigene cluster for SSTR5-AS1 Gene Hs.250557

genes like me logo Genes that share expressions with SSTR5-AS1: view

Orthologs for SSTR5-AS1 Gene

Evolution for SSTR5-AS1 Gene

ENSEMBL:
Gene Tree for SSTR5-AS1 (if available)
TreeFam:
Gene Tree for SSTR5-AS1 (if available)

No data available for Orthologs for SSTR5-AS1 Gene

Paralogs for SSTR5-AS1 Gene

No data available for Paralogs for SSTR5-AS1 Gene

Variants for SSTR5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSTR5-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs213655 -- 1,063,747(+) TCTGC(A/G)GTCCA downstream-variant-500B
rs213656 -- 1,063,847(+) CGTCG(G/T)GGCCA downstream-variant-500B
rs213657 -- 1,063,993(+) TTCTC(G/T)CCAAA downstream-variant-500B
rs213658 -- 1,064,258(+) CAAAC(A/G)TTTCA nc-transcript-variant
rs213659 -- 1,065,495(+) CAGGT(C/T)GGGGA nc-transcript-variant

Relevant External Links for SSTR5-AS1 Gene

HapMap Linkage Disequilibrium report
SSTR5-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SSTR5-AS1 Gene

Disorders for SSTR5-AS1 Gene

No disorders were found for SSTR5-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SSTR5-AS1 Gene

Publications for SSTR5-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SSTR5-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SSTR5-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SSTR5-AS1
    • Block miRNA regulation of SSTR5-AS1 using miScript Target Protectors

    Sources for SSTR5-AS1 Gene

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