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Aliases for SSTR5-AS1 Gene

Subcategory (RNA class) for SSTR5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SSTR5-AS1 Gene

  • SSTR5 Antisense RNA 1 2 3 5
  • SSTR5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SSTR5-AS1 Gene

Previous GeneCards Identifiers for SSTR5-AS1 Gene

  • GC16M001117

Summaries for SSTR5-AS1 Gene

GeneCards Summary for SSTR5-AS1 Gene

SSTR5-AS1 (SSTR5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SSTR5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSTR5-AS1 Gene

Genomics for SSTR5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SSTR5-AS1 Gene

Promoters and enhancers for SSTR5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I001078 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 558.1 +0.1 77 1.2 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 BRCA1 ZNF48 ETS1 SSTR5-AS1 SSTR5 LUC7L IFT140 TSC2 ENSG00000269482 WDR90 CRAMP1 WDR24 NME3
GH16I001081 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 9.2 -4.3 -4342 2.8 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 SLC30A9 ZNF121 GLIS2 FOS LUC7L IFT140 TSC2 ENSG00000269482 WDR90 CRAMP1 WDR24 NME3 CCDC154 TELO2
GH16I001088 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -11.6 -11572 3 MLX ARID4B DMAP1 ZNF48 SP5 MXD4 PPARG KAT8 NFIL3 SSRP1 HBA1 C1QTNF8 SSTR5-AS1
GH16I001096 Promoter/Enhancer 0.8 EPDnew dbSUPER 0.4 -17.5 -17471 0.1 RING1 C1QTNF8 LUC7L IFT140 TSC2 WDR90 CRAMP1 WDR24 NME3 CCDC154 TELO2
GH16I001095 Enhancer 0.8 ENCODE dbSUPER 0.4 -15.2 -15185 0.2 RING1 RNF2 NRF1 ARID4B REST DMAP1 SKI SKIL ZFX LUC7L IFT140 TSC2 WDR90 CRAMP1 WDR24 NME3 CCDC154 TELO2 ENSG00000262528
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SSTR5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSTR5-AS1 Gene

Genomic Locations for SSTR5-AS1 Gene
chr16:1,064,081-1,078,731
(GRCh38/hg38)
Size:
14,651 bases
Orientation:
Minus strand
chr16:1,114,081-1,128,731
(GRCh37/hg19)

Genomic View for SSTR5-AS1 Gene

Genes around SSTR5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSTR5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSTR5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSTR5-AS1 Gene

Proteins for SSTR5-AS1 Gene

Post-translational modifications for SSTR5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSTR5-AS1 Gene

Domains & Families for SSTR5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSTR5-AS1 Gene

Function for SSTR5-AS1 Gene

Phenotypes From GWAS Catalog for SSTR5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSTR5-AS1 Gene

Localization for SSTR5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SSTR5-AS1 Gene

Pathways & Interactions for SSTR5-AS1 Gene

SuperPathways for SSTR5-AS1 Gene

No Data Available

Interacting Proteins for SSTR5-AS1 Gene

Gene Ontology (GO) - Biological Process for SSTR5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSTR5-AS1 Gene

Drugs & Compounds for SSTR5-AS1 Gene

No Compound Related Data Available

Transcripts for SSTR5-AS1 Gene

mRNA/cDNA for SSTR5-AS1 Gene

Unigene Clusters for SSTR5-AS1 Gene

SSTR5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SSTR5-AS1 Gene

No ASD Table

Relevant External Links for SSTR5-AS1 Gene

GeneLoc Exon Structure for
SSTR5-AS1
ECgene alternative splicing isoforms for
SSTR5-AS1

Expression for SSTR5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSTR5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SSTR5-AS1 Gene

This gene is overexpressed in Adrenal Gland (x14.2), Heart - Atrial Appendage (x9.4), and Heart - Left Ventricle (x6.0).

SOURCE GeneReport for Unigene cluster for SSTR5-AS1 Gene:

Hs.250557
genes like me logo Genes that share expression patterns with SSTR5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSTR5-AS1 Gene

Orthologs for SSTR5-AS1 Gene

Evolution for SSTR5-AS1 Gene

ENSEMBL:
Gene Tree for SSTR5-AS1 (if available)
TreeFam:
Gene Tree for SSTR5-AS1 (if available)

No data available for Orthologs for SSTR5-AS1 Gene

Paralogs for SSTR5-AS1 Gene

No data available for Paralogs for SSTR5-AS1 Gene

Variants for SSTR5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSTR5-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs121917877 protective, Somatostatin analog, resistance to 1,079,586(-) C/T upstream_transcript_variant
rs1000032817 -- 1,080,688(-) G/A upstream_transcript_variant
rs1000170742 -- 1,069,479(-) C/A/T intron_variant
rs1000276704 -- 1,065,996(-) C/G non_coding_transcript_variant
rs1000375476 -- 1,074,745(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SSTR5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2691n100 CNV gain 25217958
dgv2692n100 CNV gain 25217958
dgv777e212 CNV loss 25503493
esv2422427 CNV duplication 17116639
esv2750294 CNV deletion 23290073
esv2763125 CNV loss 21179565
esv3637602 CNV loss 21293372
nsv1046885 CNV gain 25217958
nsv1144750 CNV deletion 24896259
nsv1160327 CNV deletion 26073780
nsv428316 CNV gain+loss 18775914
nsv457315 CNV gain 19166990
nsv457323 CNV loss 19166990
nsv471066 CNV loss 18288195
nsv471067 CNV gain 18288195
nsv523609 CNV loss 19592680
nsv571046 CNV gain 21841781
nsv571092 CNV gain 21841781
nsv571099 CNV loss 21841781
nsv571100 CNV loss 21841781
nsv571101 CNV gain 21841781
nsv833116 CNV loss 17160897
nsv9329 CNV gain 18304495
nsv952898 CNV deletion 24416366

Additional Variant Information for SSTR5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSTR5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSTR5-AS1 Gene

Disorders for SSTR5-AS1 Gene

Additional Disease Information for SSTR5-AS1

No disorders were found for SSTR5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSTR5-AS1 Gene

Publications for SSTR5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SSTR5-AS1 Gene

Sources for SSTR5-AS1 Gene

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