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Aliases for SSTR5-AS1 Gene

Subcategory (RNA class) for SSTR5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SSTR5-AS1 Gene

  • SSTR5 Antisense RNA 1 2 3 5
  • SSTR5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SSTR5-AS1 Gene

Previous GeneCards Identifiers for SSTR5-AS1 Gene

  • GC16M001117

Summaries for SSTR5-AS1 Gene

GeneCards Summary for SSTR5-AS1 Gene

SSTR5-AS1 (SSTR5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSTR5-AS1 Gene

Genomics for SSTR5-AS1 Gene

Regulatory Elements for SSTR5-AS1 Gene

Enhancers for SSTR5-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SSTR5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SSTR5-AS1 Gene

Chromosome:
16
Start:
1,064,081 bp from pter
End:
1,078,731 bp from pter
Size:
14,651 bases
Orientation:
Minus strand

Genomic View for SSTR5-AS1 Gene

Genes around SSTR5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSTR5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSTR5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSTR5-AS1 Gene

Proteins for SSTR5-AS1 Gene

Post-translational modifications for SSTR5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSTR5-AS1 Gene

Domains & Families for SSTR5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSTR5-AS1 Gene

Function for SSTR5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSTR5-AS1 Gene

Localization for SSTR5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SSTR5-AS1 Gene

Pathways & Interactions for SSTR5-AS1 Gene

SuperPathways for SSTR5-AS1 Gene

No Data Available

Interacting Proteins for SSTR5-AS1 Gene

Gene Ontology (GO) - Biological Process for SSTR5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSTR5-AS1 Gene

Drugs & Compounds for SSTR5-AS1 Gene

No Compound Related Data Available

Transcripts for SSTR5-AS1 Gene

mRNA/cDNA for SSTR5-AS1 Gene

Unigene Clusters for SSTR5-AS1 Gene

SSTR5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SSTR5-AS1 Gene

No ASD Table

Relevant External Links for SSTR5-AS1 Gene

GeneLoc Exon Structure for
SSTR5-AS1
ECgene alternative splicing isoforms for
SSTR5-AS1

Expression for SSTR5-AS1 Gene

mRNA expression in normal human tissues for SSTR5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SSTR5-AS1 Gene

This gene is overexpressed in Adrenal Gland (x14.2), Heart - Atrial Appendage (x9.4), and Heart - Left Ventricle (x6.0).

SOURCE GeneReport for Unigene cluster for SSTR5-AS1 Gene Hs.250557

genes like me logo Genes that share expression patterns with SSTR5-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SSTR5-AS1 Gene

Orthologs for SSTR5-AS1 Gene

Evolution for SSTR5-AS1 Gene

ENSEMBL:
Gene Tree for SSTR5-AS1 (if available)
TreeFam:
Gene Tree for SSTR5-AS1 (if available)

No data available for Orthologs for SSTR5-AS1 Gene

Paralogs for SSTR5-AS1 Gene

No data available for Paralogs for SSTR5-AS1 Gene

Variants for SSTR5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSTR5-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs213655 -- 1,063,747(+) TCTGC(A/G)GTCCA downstream-variant-500B
rs213656 -- 1,063,847(+) CGTCG(G/T)GGCCA downstream-variant-500B
rs213657 -- 1,063,993(+) TTCTC(G/T)CCAAA downstream-variant-500B
rs213658 -- 1,064,258(+) CAAAC(A/G)TTTCA nc-transcript-variant
rs213659 -- 1,065,495(+) CAGGT(C/T)GGGGA nc-transcript-variant

Relevant External Links for SSTR5-AS1 Gene

HapMap Linkage Disequilibrium report
SSTR5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SSTR5-AS1 Gene

Disorders for SSTR5-AS1 Gene

Relevant External Links for SSTR5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSTR5-AS1

No disorders were found for SSTR5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSTR5-AS1 Gene

Publications for SSTR5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SSTR5-AS1 Gene

Sources for SSTR5-AS1 Gene

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