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Aliases & Descriptions for SST
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| SMST 1, 2 | | somatostatin 2 | | somatostatin-14 2 | | somatostatin-28 2 |
| | | Descriptions |
|---|
| Growth hormone release-inhibiting factor 3 |
|
| | Search outside databases for aliases for SST genePrevious GC identifers: GC03M184201 GC03M188648 GC03M188788 GC03M188707 |
Summaries for SST(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SST: The hormone somatostatin has active 14 aa and 28 aa forms that are produced by alternate cleavage of the single preproprotein encoded by this gene. Somatostatin is expressed throughout the body and inhibits the release of numerous secondary hormones by binding to high-affinity G-protein-coupled somatostatin receptors. This hormone is an important regulator of the endocrine system through its interactions with pituitary growth hormone, thyroid stimulating hormone, and most hormones of the gastrointestinal tract. Somatostatin also affects rates of neurotransmission in the central nervous system and proliferation of both normal and tumorigenic cells. [provided by RefSeq] UniProtKB/Swiss-Prot: SMS_HUMAN, P61278Function: Somatostatin inhibits the release of somatotropinGene Wiki entry for SST (Somatostatin) |
Genomic Location for SST
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SST gene 
Entrez Gene cytogenetic band: 3q28 Ensembl cytogenetic band: 3q27.3 HGNC cytogenetic band: 3q28SST Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M188869:
(about GC identifiers)
Start:
|
188,869,388 bp from pter |
End:
|
188,870,895 bp from pter |
Size:
|
1,508 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_005612.15
| Proteins for SST
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SMS_HUMAN, P61278 (See
protein sequence)Recommended Name: Somatostatin precursor Size: 116 amino acids; 12736 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1P2W (3D)
 
Secondary accessions: P01166REFSEQ proteins: NP_001039.1
ENSEMBL proteins: ENSP00000287641
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SST: Assays for SST: | Protein
Domains/ Families for SST(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P61278
ProtoNet protein and cluster: P61278 UniProtKB/Swiss-Prot: SMS_HUMAN, P61278Similarity: Belongs to the somatostatin family | Gene Function for SST
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001048
Applied Biosystems Silencer® siRNAs for SST
Sigma-Aldrich siRNA for SST  Sigma-Aldrich shRNA Panels and shRNA for SST  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001048                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001048                                  untagged cDNA clone in CMV expression vector: NM_001048 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001048
UniProtKB/Swiss-Prot: SMS_HUMAN, P61278Function: Somatostatin inhibits the release of somatotropinGenatlas biochemistry entry for SST:somatostatin5 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Sst):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for SST
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for SST (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SST 
5/98 Interacting proteins for SST (ENSP000002876413) via UniProtKB, MINT, and/or STRING (see all 98
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for SST(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for SST available from Tocris Bioscience UniProtKB/Swiss-Prot: SMS_HUMAN, P61278Pharmaceutical: A synthetic analog known as octreotide or SMS 201-995 is available under the name Sandostatin (Novartis). It is used for the treatment of a variety of disorders including acromegaly and the symptomatic treatment of carcinoid tumors and vasoactive intestinal peptide tumors 10/20 Novoseek chemical compound relationships for SST gene (see all 20
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| 111in-pentetreotide |
91.18 |
70 |
7975760 (3), 11787852 (3), 7908220 (2), 8683311 (1) (see all 56) |
| pegvisomant |
88.32 |
48 |
17427111 (3), 16498061 (2), 18611977 (2), 19147599 (2) (see all 34) |
| tyr-3-octreotide |
85.45 |
33 |
10537142 (5), 10398816 (2), 1975618 (2), 9662587 (1) (see all 19) |
| pasireotide |
83.01 |
15 |
18957506 (2), 18041687 (2), 17113654 (1), 19445573 (1) (see all 11) |
| pentetreotide |
80.32 |
12 |
8099808 (2), 11952044 (1), 10229898 (1), 9669296 (1) (see all 9) |
| 2-pyrrolinodoxorubicin |
76.90 |
22 |
10690557 (1), 11290438 (1), 11027415 (1), 11571730 (1) (see all 13) |
| prosomatostatin |
75.48 |
51 |
1976560 (5), 8846251 (5), 14614908 (3), 1967585 (2) (see all 15) |
| ghrp |
73.06 |
27 |
7738479 (3), 14610296 (3), 12795360 (2), 17686882 (2) (see all 13) |
| hexarelin |
72.22 |
23 |
9624598 (3), 7731498 (3), 8799695 (2), 7588427 (2) (see all 15) |
| pre-prosomatostatin |
70.41 |
10 |
1968345 (1), 15970377 (1), 8097410 (1), 8621771 (1) (see all 8) |
About this table
|
Transcripts for SST(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001048
Sigma-Aldrich siRNA for SST  Sigma-Aldrich shRNA Panels and shRNA for SST  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001048 REFSEQ mRNAs for SST gene: NM_001048.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001048               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001048                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001048                                  untagged cDNA clone in CMV expression vector: NM_001048  Additional cDNA sequence: AK312177.1 BC032625.1 6 DOTS entries: DT.97806115 DT.100815862 DT.412989 DT.120879761 DT.100815860 DT.100815861 24/365 AceView cDNA sequences (see all 365
):BU949387 BU078977 CA866312 BQ271933 CA776482 BU785692 CA841941 BM505285 BM314522 BM765896 BM352863 BU952101 BU785111 CB177931 BM352214 BU074907 BM509691 CB068296 BQ271542 BQ286062 CA775400 BM314215 BU952061 BM311218
highest scoring ESTs for SST:AI636761 AA084460 AA670289 AI091308 AI347725 AI460386 AI590063 AI656417 AI796391 AW583834 Unigene Cluster for SST: Somatostatin Hs.12409 [show with all ESTs]Unigene Representative Sequence: BI918626
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000287641
|
Expression for SST
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SST expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SST
1 / 2 / 3 4 probe-sets matching SST gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.12409
Expression variation in blood from EXPOLDB for SST |
Orthologs for SST
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SST gene from 5/10 species (see all 10
)
About this table Species with no ortholog for SST
ENSEMBL Gene Tree for SST | Paralogs for SST(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for SST(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SST (up to first 250kb)
|
Disorders & Mutations for SST
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 182450
10/97 Novoseek disease relationships for SST gene (see all 97
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| acromegaly |
92.94 |
341 |
16776333 (5), 11888834 (4), 17311857 (4), 18031313 (4) (see all 99) |
| neuroendocrine tumors |
89.92 |
157 |
9408151 (4), 9002775 (3), 1359688 (3), 15819288 (3) (see all 99) |
| carcinoid |
88.29 |
200 |
9002775 (3), 7574789 (3), 18049175 (3), 9622077 (3) (see all 99) |
| somatostatinoma |
85.38 |
27 |
9189135 (2), 16105971 (2), 1686137 (1), 1969977 (1) (see all 22) |
| pituitary adenoma |
84.44 |
125 |
12807513 (5), 15281350 (4), 10526255 (3), 16216913 (3) (see all 89) |
| vipoma |
81.74 |
13 |
8197564 (2), 2177234 (1), 1685674 (1), 15646540 (1) (see all 12) |
| gastrinoma |
81.18 |
20 |
9239629 (3), 14564638 (1), 2303679 (1), 1357826 (1) (see all 17) |
| serotonin syndrome |
81.12 |
50 |
14699693 (3), 1377097 (2), 8625251 (2), 8977344 (2) (see all 44) |
| pituitary tumors |
80.38 |
46 |
16452215 (3), 18243520 (2), 16263832 (2), 15857828 (2) (see all 37) |
| glucagonoma |
80.28 |
12 |
8813473 (1), 1679271 (1), 12472080 (1), 14718149 (1) (see all 12) |
About this table
Human Gene Mutation Database: SST Genetic Association Database: SST Human Genome Epidemiology Navigator: SST (19 documents)
|
Medical News for SST(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for SST (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/2793 PubMed articles for SST gene (see all 2793
):- Sequence of the human somatostatin I gene. (PubMed id 6142531)2, 3, 4 Shen L.P. and Rutter W.J. (1984)
- Human somatostatin I: sequence of the cDNA. (PubMed id 6126875)2, 3, 4 Shen L.-P.... Rutter W.J. (1982)
- Genetic variation in the growth hormone synthesis pathway in relation to circulating insulin-like growth factor-I, insulin-like growth factor binding protein-3, and breast cancer risk: results from the European prospective investigation into cancer and nutrition study. (PubMed id 16214911)3, 6 Canzian F....Kaaks R. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Somatostatin molecular variants in the vitreous fluid: a comparative study between diabetic patients with proliferative diabetic retinopathy and nondiabetic control subjects. (PubMed id 16043736)1, 3 Hernandez C....Simo R. (2005)
- Lower somatostatin expression is an early event in diabetic retinopathy and is associated with retinal neurodegeneration. (PubMed id 17704349)1, 3 Carrasco E....Simo R. (2007)
- Somatostatin is a selective chemoattractant for primitive (CD34(+)) hematopoietic progenitor cells. (PubMed id 11823046)1, 3 Oomen S.P....Touw I.P. (2002)
- The Effect of Transforming Growth Factor {beta} on Human Neuroendocrine Tumor BON Cell Proliferation and Differentiation Is Mediated through Somatostatin Signaling. (PubMed id 18567806)1, 3 Leu F.P....Niu C. (2008)
- Correlation between expression of gastrin, somatostatin and cell apoptosis regulation gene bcl-2/bax in large intestine carcinoma. (PubMed id 15655830)1, 3 Mao J.D....Xu G.Q. (2005)
- Elevated circulating somatostatin levels in acromegaly. (PubMed id 12952361)1, 3 Arosio M....Peracchi M. (2003)
|
Search for SST
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SST
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SST
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SST(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Somatostatin |
|
| | | About This Section
| --
| Services for SST(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SST:

 | |
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|
 |  |  |
| | | | Tocris compounds for SST |
|
 |
 | | | Antibodies for SST |
| |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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