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Aliases for SSSCA1-AS1 Gene

Subcategory (RNA class) for SSSCA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SSSCA1-AS1 Gene

  • SSSCA1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SSSCA1-AS1 Gene

Previous GeneCards Identifiers for SSSCA1-AS1 Gene

  • GC11M065338

Summaries for SSSCA1-AS1 Gene

GeneCards Summary for SSSCA1-AS1 Gene

SSSCA1-AS1 (SSSCA1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SSSCA1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSSCA1-AS1 Gene

Genomics for SSSCA1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SSSCA1-AS1 Gene

Promoters and enhancers for SSSCA1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I065470 Promoter/Enhancer 2.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 31.6 +80.3 80339 40 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 LOC105369346 SF1 PCNX3 POLA2 ZFPL1 EIF1AD SART1 MUS81 LOC105369352 KAT5
GH11I065414 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE dbSUPER 21.9 +146.2 146242 18.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 NEAT1 ENSG00000277599 ENSG00000278050 ENSG00000278144 GC11P065529 SF1 ZFPL1 EIF1AD POLA2 PCNX3
GH11I065886 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.2 -325.0 -325035 18.4 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SP3 FOSL1 FIBP CCDC85B SNX32 ENSG00000258297 EIF1AD RBM14 MUS81 SART1 POLA2
GH11I065774 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 12.8 -208.0 -207984 8.8 ARNT ARID4B SIN3A ZNF2 YY1 SLC30A9 POLR2B CBX5 ZNF207 ZNF143 AP5B1 RBM14 ENSG00000258297 PCNX3 RBM4 ZFPL1 SF1 LOC105369352 ENSG00000255038 SF3B2
GH11I066342 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 -778.1 -778122 11.8 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 LOC102724064 B4GAT1 BRMS1 TRS-GCT3-1 RIN1 ENSG00000258297 RBM14 LOC105369352 ACTN3 RBM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSSCA1-AS1 Gene

Genomic Locations for SSSCA1-AS1 Gene
chr11:65,568,482-65,570,423
(GRCh38/hg38)
Size:
1,942 bases
Orientation:
Minus strand
chr11:65,336,691-65,337,884
(GRCh37/hg19)

Genomic View for SSSCA1-AS1 Gene

Genes around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSSCA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSSCA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSSCA1-AS1 Gene

Proteins for SSSCA1-AS1 Gene

Post-translational modifications for SSSCA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSSCA1-AS1 Gene

Domains & Families for SSSCA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSSCA1-AS1 Gene

Function for SSSCA1-AS1 Gene

Phenotypes From GWAS Catalog for SSSCA1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSSCA1-AS1 Gene

Localization for SSSCA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SSSCA1-AS1 Gene

Pathways & Interactions for SSSCA1-AS1 Gene

SuperPathways for SSSCA1-AS1 Gene

No Data Available

Interacting Proteins for SSSCA1-AS1 Gene

Gene Ontology (GO) - Biological Process for SSSCA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSSCA1-AS1 Gene

Drugs & Compounds for SSSCA1-AS1 Gene

No Compound Related Data Available

Transcripts for SSSCA1-AS1 Gene

mRNA/cDNA for SSSCA1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSSCA1-AS1 Gene

No ASD Table

Relevant External Links for SSSCA1-AS1 Gene

GeneLoc Exon Structure for
SSSCA1-AS1
ECgene alternative splicing isoforms for
SSSCA1-AS1

Expression for SSSCA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSSCA1-AS1 Gene

genes like me logo Genes that share expression patterns with SSSCA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSSCA1-AS1 Gene

Orthologs for SSSCA1-AS1 Gene

Evolution for SSSCA1-AS1 Gene

ENSEMBL:
Gene Tree for SSSCA1-AS1 (if available)
TreeFam:
Gene Tree for SSSCA1-AS1 (if available)

No data available for Orthologs for SSSCA1-AS1 Gene

Paralogs for SSSCA1-AS1 Gene

No data available for Paralogs for SSSCA1-AS1 Gene

Variants for SSSCA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSSCA1-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000078512 -- 65,569,791(-) G/C non_coding_transcript_variant
rs1001342869 -- 65,570,438(-) A/C upstream_transcript_variant
rs1001625621 -- 65,570,229(-) G/T non_coding_transcript_variant
rs1003090160 -- 65,569,657(-) A/C non_coding_transcript_variant
rs1003738204 -- 65,572,311(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SSSCA1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1969n54 CNV loss 21841781
nsv951018 CNV deletion 24416366

Additional Variant Information for SSSCA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSSCA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSSCA1-AS1 Gene

Disorders for SSSCA1-AS1 Gene

Additional Disease Information for SSSCA1-AS1

No disorders were found for SSSCA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSSCA1-AS1 Gene

Publications for SSSCA1-AS1 Gene

  1. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. (PMID: 25241763) Springelkamp H … Hammond CJ (Nature communications 2014) 3 58
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H … Hirschhorn JN (Nature 2010) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SSSCA1-AS1 Gene

Sources for SSSCA1-AS1 Gene

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