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Aliases for SSSCA1-AS1 Gene

Subcategory (RNA class) for SSSCA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SSSCA1-AS1 Gene

  • SSSCA1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SSSCA1-AS1 Gene

Previous GeneCards Identifiers for SSSCA1-AS1 Gene

  • GC11M065338

Summaries for SSSCA1-AS1 Gene

GeneCards Summary for SSSCA1-AS1 Gene

SSSCA1-AS1 (SSSCA1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSSCA1-AS1 Gene

Genomics for SSSCA1-AS1 Gene

Regulatory Elements for SSSCA1-AS1 Gene

Enhancers for SSSCA1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G065470 2.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 11.1 +80.3 80340 40.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 LOC105369352 ZFPL1 KAT5 ENSG00000254461 EIF1AD NEAT1 FRMD8 EHBP1L1 POLA2 LOC101927789
GH11G065414 2.2 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +146.2 146242 18.8 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZFPL1 NEAT1 LOC105369352 KAT5 EIF1AD FRMD8 MUS81 PCNX3 POLA2 ENSG00000255320
GH11G065377 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11 +187.9 187942 10.3 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 ENSG00000254461 LOC105369352 KAT5 NEAT1 DPF2 LOC728975 KLC2 SSSCA1-AS1 SNX15 ZFPL1
GH11G064846 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11 +713.4 713370 20.6 CREB3L1 ZFP64 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 TBX21 GLIS1 EHD1 MAP4K2 SNX15 MIR192 MEN1 KAT5 SSSCA1-AS1 MAJIN GPHA2 ENSG00000269038
GH11G065550 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +14.2 14232 11.3 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A YBX1 FEZF1 ZNF2 YY1 ENSG00000254461 LOC105369352 MUS81 NEAT1 ZFPL1 RNASEH2C POLA2 SSSCA1-AS1 EHBP1L1 KAT5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SSSCA1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SSSCA1-AS1 Gene

65,568,482 bp from pter
65,570,423 bp from pter
1,942 bases
Minus strand

Genomic View for SSSCA1-AS1 Gene

Genes around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSSCA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSSCA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSSCA1-AS1 Gene

Proteins for SSSCA1-AS1 Gene

Post-translational modifications for SSSCA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSSCA1-AS1 Gene

Domains & Families for SSSCA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSSCA1-AS1 Gene

Function for SSSCA1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSSCA1-AS1 Gene

Localization for SSSCA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SSSCA1-AS1 Gene

Pathways & Interactions for SSSCA1-AS1 Gene

SuperPathways for SSSCA1-AS1 Gene

No Data Available

Interacting Proteins for SSSCA1-AS1 Gene

Gene Ontology (GO) - Biological Process for SSSCA1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SSSCA1-AS1 Gene

Drugs & Compounds for SSSCA1-AS1 Gene

No Compound Related Data Available

Transcripts for SSSCA1-AS1 Gene

mRNA/cDNA for SSSCA1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSSCA1-AS1 Gene

No ASD Table

Relevant External Links for SSSCA1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SSSCA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSSCA1-AS1 Gene

genes like me logo Genes that share expression patterns with SSSCA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSSCA1-AS1 Gene

Orthologs for SSSCA1-AS1 Gene

Evolution for SSSCA1-AS1 Gene

Gene Tree for SSSCA1-AS1 (if available)
Gene Tree for SSSCA1-AS1 (if available)

No data available for Orthologs for SSSCA1-AS1 Gene

Paralogs for SSSCA1-AS1 Gene

No data available for Paralogs for SSSCA1-AS1 Gene

Variants for SSSCA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSSCA1-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000078512 -- 65,569,791(+) AATGC(C/G)CGTGC nc-transcript-variant, upstream-variant-2KB
rs1001342869 -- 65,570,438(+) AGCGG(A/C)GGGCG upstream-variant-2KB
rs1001625621 -- 65,570,229(+) CCGGA(G/T)GAGAG nc-transcript-variant, upstream-variant-2KB
rs1003090160 -- 65,569,657(+) GGTCC(A/C)TGTTC nc-transcript-variant, upstream-variant-2KB
rs1003738204 -- 65,572,311(+) GGCGG(C/G)GCGCG downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SSSCA1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1969n54 CNV loss 21841781
nsv951018 CNV deletion 24416366

Relevant External Links for SSSCA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSSCA1-AS1 Gene

Disorders for SSSCA1-AS1 Gene

Relevant External Links for SSSCA1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SSSCA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSSCA1-AS1 Gene

Publications for SSSCA1-AS1 Gene

  1. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. (PMID: 25241763) Springelkamp H. … Hammond C.J. (Nat Commun 2014) 3 64
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H. … Hirschhorn J.N. (Nature 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SSSCA1-AS1 Gene

Sources for SSSCA1-AS1 Gene

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