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Aliases for SSSCA1-AS1 Gene

Subcategory (RNA class) for SSSCA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SSSCA1-AS1 Gene

  • SSSCA1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SSSCA1-AS1 Gene

Previous GeneCards Identifiers for SSSCA1-AS1 Gene

  • GC11M065338

Summaries for SSSCA1-AS1 Gene

GeneCards Summary for SSSCA1-AS1 Gene

SSSCA1-AS1 (SSSCA1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSSCA1-AS1 Gene

Genomics for SSSCA1-AS1 Gene

Regulatory Elements for SSSCA1-AS1 Gene

Enhancers for SSSCA1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G065470 2.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 11.1 +80.3 80340 40.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 LOC105369352 ZFPL1 KAT5 ENSG00000254461 EIF1AD NEAT1 FRMD8 EHBP1L1 POLA2 LOC101927789
GH11G065414 2.2 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +146.2 146242 18.8 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZFPL1 NEAT1 LOC105369352 KAT5 EIF1AD FRMD8 MUS81 PCNX3 POLA2 ENSG00000255320
GH11G065377 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11 +187.9 187942 10.3 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 ENSG00000254461 LOC105369352 KAT5 NEAT1 DPF2 LOC728975 KLC2 SSSCA1-AS1 SNX15 ZFPL1
GH11G064846 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11 +713.4 713370 20.6 CREB3L1 ZFP64 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 TBX21 GLIS1 EHD1 MAP4K2 SNX15 MIR192 MEN1 KAT5 SSSCA1-AS1 MAJIN GPHA2 ENSG00000269038
GH11G065550 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +14.2 14232 11.3 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A YBX1 FEZF1 ZNF2 YY1 ENSG00000254461 LOC105369352 MUS81 NEAT1 ZFPL1 RNASEH2C POLA2 SSSCA1-AS1 EHBP1L1 KAT5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SSSCA1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000264462 123 1801 HDGF PKNOX1 MLX CREB3L1 AGO1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for SSSCA1-AS1 Gene

Chromosome:
11
Start:
65,568,482 bp from pter
End:
65,570,423 bp from pter
Size:
1,942 bases
Orientation:
Minus strand

Genomic View for SSSCA1-AS1 Gene

Genes around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSSCA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSSCA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSSCA1-AS1 Gene

Proteins for SSSCA1-AS1 Gene

Post-translational modifications for SSSCA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSSCA1-AS1 Gene

Domains & Families for SSSCA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSSCA1-AS1 Gene

Function for SSSCA1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSSCA1-AS1 Gene

Localization for SSSCA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SSSCA1-AS1 Gene

Pathways & Interactions for SSSCA1-AS1 Gene

SuperPathways for SSSCA1-AS1 Gene

No Data Available

Interacting Proteins for SSSCA1-AS1 Gene

Gene Ontology (GO) - Biological Process for SSSCA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSSCA1-AS1 Gene

Drugs & Compounds for SSSCA1-AS1 Gene

No Compound Related Data Available

Transcripts for SSSCA1-AS1 Gene

mRNA/cDNA for SSSCA1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSSCA1-AS1 Gene

No ASD Table

Relevant External Links for SSSCA1-AS1 Gene

GeneLoc Exon Structure for
SSSCA1-AS1
ECgene alternative splicing isoforms for
SSSCA1-AS1

Expression for SSSCA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSSCA1-AS1 Gene

genes like me logo Genes that share expression patterns with SSSCA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSSCA1-AS1 Gene

Orthologs for SSSCA1-AS1 Gene

Evolution for SSSCA1-AS1 Gene

ENSEMBL:
Gene Tree for SSSCA1-AS1 (if available)
TreeFam:
Gene Tree for SSSCA1-AS1 (if available)

No data available for Orthologs for SSSCA1-AS1 Gene

Paralogs for SSSCA1-AS1 Gene

No data available for Paralogs for SSSCA1-AS1 Gene

Variants for SSSCA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSSCA1-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000078512 -- 65,569,791(+) AATGC(C/G)CGTGC nc-transcript-variant, upstream-variant-2KB
rs1001342869 -- 65,570,438(+) AGCGG(A/C)GGGCG upstream-variant-2KB
rs1001625621 -- 65,570,229(+) CCGGA(G/T)GAGAG nc-transcript-variant, upstream-variant-2KB
rs1003090160 -- 65,569,657(+) GGTCC(A/C)TGTTC nc-transcript-variant, upstream-variant-2KB
rs1003738204 -- 65,572,311(+) GGCGG(C/G)GCGCG downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SSSCA1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1969n54 CNV loss 21841781
nsv951018 CNV deletion 24416366

Relevant External Links for SSSCA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSSCA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSSCA1-AS1 Gene

Disorders for SSSCA1-AS1 Gene

Relevant External Links for SSSCA1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSSCA1-AS1

No disorders were found for SSSCA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSSCA1-AS1 Gene

Publications for SSSCA1-AS1 Gene

  1. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. (PMID: 25241763) Springelkamp H. … Hammond C.J. (Nat Commun 2014) 3 64
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H. … Hirschhorn J.N. (Nature 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SSSCA1-AS1 Gene

Sources for SSSCA1-AS1 Gene

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