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Aliases for SSSCA1-AS1 Gene

Subcategory (RNA class) for SSSCA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SSSCA1-AS1 Gene

  • SSSCA1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SSSCA1-AS1 Gene

Previous GeneCards Identifiers for SSSCA1-AS1 Gene

  • GC11M065338

Summaries for SSSCA1-AS1 Gene

GeneCards Summary for SSSCA1-AS1 Gene

SSSCA1-AS1 (SSSCA1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSSCA1-AS1 Gene

Genomics for SSSCA1-AS1 Gene

Regulatory Elements for SSSCA1-AS1 Gene

Enhancers for SSSCA1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F065470 2.5 VISTA FANTOM5 Ensembl ENCODE 50 +80.3 80340 40.0 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 LOC105369353 LOC105369352 KAT5 SSSCA1-AS1 NEAT1 ZFPL1 EIF1AD EHBP1L1 MRPL11 POLA2
GH11F066342 1.8 FANTOM5 Ensembl ENCODE 30.3 -778.1 -778122 11.8 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 ENSG00000258297 RBM14 RIN1 MRPL11 SSSCA1-AS1 EIF1AD RCE1 LOC105369352 CD248 ACTN3
GH11F066422 1.2 ENCODE 20.7 -851.5 -851504 0.8 CREB3L1 MLX ZFP64 DMAP1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MEF2D RBM4B LOC105369353 RBM14 ENSG00000258297 CLCF1 MUS81 SSSCA1-AS1 KLC2 KAT5 EIF1AD
GH11F065709 1.2 ENCODE 19.9 -141.1 -141075 4.4 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 KAT5 LOC105369353 ENSG00000258297 EIF1AD ZFPL1 RBM14 POLA2 RNASEH2C MRPL11 EHBP1L1
GH11F065650 1.9 FANTOM5 Ensembl ENCODE 11.6 -82.9 -82940 6.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 LOC105369352 RNASEH2C ZFPL1 KAT5 RBM14 MRPL11 LOC105369353 EIF1AD MUS81 MAP3K11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SSSCA1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SSSCA1-AS1 Gene

65,568,482 bp from pter
65,570,423 bp from pter
1,942 bases
Minus strand

Genomic View for SSSCA1-AS1 Gene

Genes around SSSCA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSSCA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSSCA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSSCA1-AS1 Gene

Proteins for SSSCA1-AS1 Gene

Post-translational modifications for SSSCA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSSCA1-AS1 Gene

Domains & Families for SSSCA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSSCA1-AS1 Gene

Function for SSSCA1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSSCA1-AS1 Gene

Localization for SSSCA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SSSCA1-AS1 Gene

Pathways & Interactions for SSSCA1-AS1 Gene

SuperPathways for SSSCA1-AS1 Gene

No Data Available

Interacting Proteins for SSSCA1-AS1 Gene

Gene Ontology (GO) - Biological Process for SSSCA1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SSSCA1-AS1 Gene

Transcripts for SSSCA1-AS1 Gene

mRNA/cDNA for SSSCA1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSSCA1-AS1 Gene

No ASD Table

Relevant External Links for SSSCA1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SSSCA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SSSCA1-AS1 Gene

genes like me logo Genes that share expression patterns with SSSCA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SSSCA1-AS1 Gene

Orthologs for SSSCA1-AS1 Gene

Evolution for SSSCA1-AS1 Gene

Gene Tree for SSSCA1-AS1 (if available)
Gene Tree for SSSCA1-AS1 (if available)

No data available for Orthologs for SSSCA1-AS1 Gene

Paralogs for SSSCA1-AS1 Gene

No data available for Paralogs for SSSCA1-AS1 Gene

Variants for SSSCA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSSCA1-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1046376 -- 65,570,695(+) CGGCT(A/C)ATGGG upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs111357827 -- 65,570,971(+) TCCCG(C/G)TAAGA upstream-variant-2KB, splice-donor-variant
rs11227227 -- 65,571,907(+) AGCTT(A/G)TTTCT downstream-variant-500B, upstream-variant-2KB
rs112403982 -- 65,570,602(+) TCCCC(A/G/T)GAAGT upstream-variant-2KB, splice-acceptor-variant, utr-variant-5-prime
rs112731049 -- 65,569,814(+) TATTC(A/G)GTCTG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SSSCA1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1969n54 CNV loss 21841781
nsv951018 CNV deletion 24416366

Relevant External Links for SSSCA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSSCA1-AS1 Gene

Disorders for SSSCA1-AS1 Gene

Relevant External Links for SSSCA1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SSSCA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSSCA1-AS1 Gene

Publications for SSSCA1-AS1 Gene

  1. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. (PMID: 25241763) Springelkamp H. … Hammond C.J. (Nat Commun 2014) 3 64
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H. … Hirschhorn J.N. (Nature 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SSSCA1-AS1 Gene

Sources for SSSCA1-AS1 Gene

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