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Aliases for SSR4P1 Gene

Aliases for SSR4P1 Gene

  • Signal Sequence Receptor Subunit 4 Pseudogene 1 2 3 5
  • Signal Sequence Receptor, Delta Pseudogene 1 2 3
  • Chromosome 21 Open Reading Frame 122 2
  • HCG401283 3
  • C21orf122 3
  • PRED57 3
  • PRED90 3

External Ids for SSR4P1 Gene

Previous HGNC Symbols for SSR4P1 Gene

  • C21orf122

Previous GeneCards Identifiers for SSR4P1 Gene

  • GC21M046492
  • GC21M046581
  • GC21M046738

Summaries for SSR4P1 Gene

GeneCards Summary for SSR4P1 Gene

SSR4P1 (Signal Sequence Receptor Subunit 4 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSR4P1 Gene

Genomics for SSR4P1 Gene

Regulatory Elements for SSR4P1 Gene

Enhancers for SSR4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F045029 0.5 Ensembl ENCODE 22.7 +42.1 42106 5.6 ESRRA CBX3 HINFP FEZF1 ZNF354C CBX5 SCRT2 TRIM24 SCRT1 HLF ADARB1 SSR4P1 PICSAR
GH21F045134 0.5 Ensembl ENCODE 21.3 -62.7 -62728 4.8 TBP HDGF PKNOX1 CBX3 ARNT KLF17 SIN3A ZNF2 RAD21 ZNF143 SSR4P1 ADARB1 MTCO1P3 ENSG00000228355 LINC00334 LINC00205 LINC00315 KRTAP12-4 LOC105372835 GC21M045191
GH21F045101 1.3 Ensembl ENCODE 16.7 -29.2 -29191 4.1 HDGF ZSCAN5A CTCF KLF1 JUN FEZF1 EBF1 ZIC2 RAD21 ZNF2 SSR4P1 ADARB1 PFKL LOC105372835 GC21M045191
GH21F045125 1 Ensembl ENCODE 16 -52.1 -52118 2.2 ZFHX2 STAT1 SMARCA4 POLR2A IKZF1 MNT EGR2 SSR4P1 ADARB1 LINC00315 LOC105372835 GC21M045191
GH21F045010 0.6 ENCODE 15.4 +63.8 63825 0.2 OSR2 PKNOX1 SMARCA4 CEBPB ZIC2 SSR4P1 ADARB1 PICSAR
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SSR4P1 on UCSC Golden Path with GeneCards custom track

Promoters for SSR4P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000186351 -735 3401 PKNOX1 ARNT ARID4B SIN3A ZNF2 CBX5 ZNF263 ZHX2 REST SMARCB1

Genomic Location for SSR4P1 Gene

Chromosome:
21
Start:
45,070,952 bp from pter
End:
45,074,165 bp from pter
Size:
3,214 bases
Orientation:
Minus strand

Genomic View for SSR4P1 Gene

Genes around SSR4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSR4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSR4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSR4P1 Gene

Proteins for SSR4P1 Gene

Post-translational modifications for SSR4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSR4P1 Gene

Domains & Families for SSR4P1 Gene

Suggested Antigen Peptide Sequences for SSR4P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SSR4P1 Gene

Function for SSR4P1 Gene

Phenotypes for SSR4P1 Gene

GenomeRNAi human phenotypes for SSR4P1:
genes like me logo Genes that share phenotypes with SSR4P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSR4P1 Gene

Localization for SSR4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SSR4P1 Gene

Pathways & Interactions for SSR4P1 Gene

SuperPathways for SSR4P1 Gene

No Data Available

Interacting Proteins for SSR4P1 Gene

Gene Ontology (GO) - Biological Process for SSR4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSR4P1 Gene

Transcripts for SSR4P1 Gene

mRNA/cDNA for SSR4P1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SSR4P1 Gene

Signal sequence receptor, delta pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SSR4P1 Gene

No ASD Table

Relevant External Links for SSR4P1 Gene

GeneLoc Exon Structure for
SSR4P1
ECgene alternative splicing isoforms for
SSR4P1

Expression for SSR4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SSR4P1 Gene

mRNA differential expression in normal tissues according to GTEx for SSR4P1 Gene

This gene is overexpressed in Artery - Tibial (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of SSR4P1 Gene:

SSR4P1

SOURCE GeneReport for Unigene cluster for SSR4P1 Gene:

Hs.309203
genes like me logo Genes that share expression patterns with SSR4P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SSR4P1 Gene

Orthologs for SSR4P1 Gene

Evolution for SSR4P1 Gene

ENSEMBL:
Gene Tree for SSR4P1 (if available)
TreeFam:
Gene Tree for SSR4P1 (if available)

No data available for Orthologs for SSR4P1 Gene

Paralogs for SSR4P1 Gene

No data available for Paralogs for SSR4P1 Gene

Variants for SSR4P1 Gene

Sequence variations from dbSNP and Humsavar for SSR4P1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs111813185 -- 45,072,737(+) AGGCC(-/CA)CAGAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112113119 -- 45,073,161(+) TGCCC(A/G)GGCCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112131214 -- 45,072,420(+) GCGAA(G/T)GCCTG intron-variant, nc-transcript-variant
rs112309078 -- 45,074,322(+) CGGTC(C/T)CGCGC upstream-variant-2KB
rs112372208 -- 45,075,171(+) GAGAT(C/G)GGAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SSR4P1 Gene

Variant ID Type Subtype PubMed ID
nsv834110 CNV loss 17160897

Variation tolerance for SSR4P1 Gene

Gene Damage Index Score: 10.62; 91.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SSR4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSR4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SSR4P1 Gene

Disorders for SSR4P1 Gene

Relevant External Links for SSR4P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSR4P1

No disorders were found for SSR4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSR4P1 Gene

Publications for SSR4P1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for SSR4P1 Gene

Sources for SSR4P1 Gene

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