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Aliases for SSR4P1 Gene

Aliases for SSR4P1 Gene

  • Signal Sequence Receptor Subunit 4 Pseudogene 1 2 3 5
  • Signal Sequence Receptor, Delta Pseudogene 1 2 3
  • Chromosome 21 Open Reading Frame 122 2
  • HCG401283 3
  • C21orf122 3
  • PRED57 3
  • PRED90 3

External Ids for SSR4P1 Gene

Previous HGNC Symbols for SSR4P1 Gene

  • C21orf122

Previous GeneCards Identifiers for SSR4P1 Gene

  • GC21M046492
  • GC21M046581
  • GC21M046738

Summaries for SSR4P1 Gene

GeneCards Summary for SSR4P1 Gene

SSR4P1 (Signal Sequence Receptor Subunit 4 Pseudogene 1) is a Pseudogene.

Additional gene information for SSR4P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSR4P1 Gene

Genomics for SSR4P1 Gene

GeneHancer (GH) Regulatory Elements for SSR4P1 Gene

Promoters and enhancers for SSR4P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I045073 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 563.3 -1.0 -1038 4 HNRNPUL1 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A ZNF2 SSR4P1 ADARB1 LOC105372836 POFUT2 ENSG00000184441 UBE2G2 ENSG00000215447 COL6A1 PWP2 LINC00315
GH21I045134 Enhancer 1.3 Ensembl ENCODE dbSUPER 21.3 -62.7 -62728 4.8 HDGF PKNOX1 ARNT ZNF2 ARID2 ZNF143 ATF7 RUNX3 DEK REST SSR4P1 ADARB1 ENSG00000228355 MTCO1P3 LINC00334 LINC00205 LINC00315 KRTAP12-4 LOC105372835 GC21M045667
GH21I045128 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -55.9 -55876 3.8 ZNF143 ATF7 FOS RUNX3 DEK RXRA JUNB REST SMARCB1 MAFF SSR4P1 ADARB1 LINC00315 ITGB2 PICSAR LOC105372835 GC21M045667
GH21I045029 Enhancer 0.8 Ensembl ENCODE dbSUPER 22.7 +42.1 42105 5.6 REST EZH2 ZBTB5 ADARB1 SSR4P1 PICSAR
GH21I045101 Enhancer 1 Ensembl ENCODE dbSUPER 16.7 -28.1 -28108 1.9 CTCF STAT1 KLF1 JUN ELF1 KLF4 RAD21 ZNF121 KLF9 STAT3 LOC105372835 SSR4P1 ADARB1 PFKL GC21M045667
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SSR4P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSR4P1 Gene

Genomic Locations for SSR4P1 Gene
chr21:45,070,952-45,074,165
(GRCh38/hg38)
Size:
3,214 bases
Orientation:
Minus strand
chr21:46,490,870-46,494,080
(GRCh37/hg19)

Genomic View for SSR4P1 Gene

Genes around SSR4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSR4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSR4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSR4P1 Gene

Proteins for SSR4P1 Gene

Post-translational modifications for SSR4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSR4P1 Gene

Domains & Families for SSR4P1 Gene

Suggested Antigen Peptide Sequences for SSR4P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SSR4P1 Gene

Function for SSR4P1 Gene

Phenotypes From GWAS Catalog for SSR4P1 Gene

Phenotypes for SSR4P1 Gene

GenomeRNAi human phenotypes for SSR4P1:
genes like me logo Genes that share phenotypes with SSR4P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSR4P1 Gene

Localization for SSR4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SSR4P1 Gene

Pathways & Interactions for SSR4P1 Gene

SuperPathways for SSR4P1 Gene

No Data Available

Interacting Proteins for SSR4P1 Gene

Gene Ontology (GO) - Biological Process for SSR4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSR4P1 Gene

Drugs & Compounds for SSR4P1 Gene

No Compound Related Data Available

Transcripts for SSR4P1 Gene

mRNA/cDNA for SSR4P1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SSR4P1 Gene

Signal sequence receptor, delta pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SSR4P1 Gene

No ASD Table

Relevant External Links for SSR4P1 Gene

GeneLoc Exon Structure for
SSR4P1
ECgene alternative splicing isoforms for
SSR4P1

Expression for SSR4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSR4P1 Gene

mRNA differential expression in normal tissues according to GTEx for SSR4P1 Gene

This gene is overexpressed in Artery - Tibial (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of SSR4P1 Gene:

SSR4P1

SOURCE GeneReport for Unigene cluster for SSR4P1 Gene:

Hs.309203
genes like me logo Genes that share expression patterns with SSR4P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSR4P1 Gene

Orthologs for SSR4P1 Gene

Evolution for SSR4P1 Gene

ENSEMBL:
Gene Tree for SSR4P1 (if available)
TreeFam:
Gene Tree for SSR4P1 (if available)

No data available for Orthologs for SSR4P1 Gene

Paralogs for SSR4P1 Gene

No data available for Paralogs for SSR4P1 Gene

Variants for SSR4P1 Gene

Sequence variations from dbSNP and Humsavar for SSR4P1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000748770 -- 45,073,425(-) C/A upstream_transcript_variant
rs1000886206 -- 45,073,991(-) GGGGG/GGGG upstream_transcript_variant
rs1002345873 -- 45,073,508(-) G/A upstream_transcript_variant
rs1002515309 -- 45,074,755(-) C/A/G upstream_transcript_variant
rs1002647300 -- 45,071,497(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SSR4P1 Gene

Variant ID Type Subtype PubMed ID
nsv834110 CNV loss 17160897

Variation tolerance for SSR4P1 Gene

Gene Damage Index Score: 10.62; 91.33% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SSR4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSR4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SSR4P1 Gene

Disorders for SSR4P1 Gene

Additional Disease Information for SSR4P1

No disorders were found for SSR4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSR4P1 Gene

Publications for SSR4P1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for SSR4P1 Gene

Sources for SSR4P1 Gene

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