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Aliases for SSBP3-AS1 Gene

Subcategory (RNA class) for SSBP3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SSBP3-AS1 Gene

  • SSBP3 Antisense RNA 1 2 3 4 5
  • C1orf191 3 4
  • Chromosome 1 Open Reading Frame 191 2
  • SSBP3 Antisense Gene Protein 1 4
  • MSTP128 3
  • MST128 3

External Ids for SSBP3-AS1 Gene

ORGUL Members for SSBP3-AS1 Gene

Previous HGNC Symbols for SSBP3-AS1 Gene

  • C1orf191

Previous GeneCards Identifiers for SSBP3-AS1 Gene

  • GC01P054704

Summaries for SSBP3-AS1 Gene

GeneCards Summary for SSBP3-AS1 Gene

SSBP3-AS1 (SSBP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSBP3-AS1 Gene

Genomics for SSBP3-AS1 Gene

Regulatory Elements for SSBP3-AS1 Gene

Enhancers for SSBP3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F054218 0.5 Ensembl ENCODE 72.1 -16.3 -16305 3.1 ZFP64 RAD21 ZNF354C SCRT2 EGR2 ZNF680 SP3 ZNF654 ZBTB11 REST SSBP3-AS1 MAGOH CYB5RL HSPB11 PARS2 C1orf123 MRPL37 CDCP2 USP24 PIR51493
GH01F054609 0.2 ENCODE 33.1 +373.2 373153 1.1 ZFP64 MAX ZNF140 ZNF266 BMI1 ZIC2 ZNF101 ZNF664 ZNF791 ZNF354C SSBP3-AS1 MROH7 CYB5RL HSPB11 ENSG00000237453 TTC22 TTC4 FAM151A ACOT11
GH01F053942 0.4 ENCODE 32.2 -291.1 -291128 5.4 HDGF PKNOX1 ARID4B SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF766 ZNF207 ENSG00000228838 MAGOH SSBP3-AS1 HSPB11 RPL37P7 LOC105378729 CYB5RL TTC4 TCEANC2 LRRC42
GH01F054051 0.2 ENCODE 31.5 -183.3 -183286 3.7 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 MAGOH ENSG00000228838 SSBP3-AS1 TCEANC2 RPL37P7 LOC105378729 PODN PARS2 C1orf123 CYB5RL
GH01F054341 0.7 Ensembl ENCODE 23 +106.1 106127 2.2 ZNF263 CTCF PKNOX1 KLF1 ZMYM3 RAD21 ZNF623 FOSL1 ZFHX2 SMARCA4 SSBP3-AS1 GC01M054384 ENSG00000225632
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SSBP3-AS1 Gene

Chromosome:
1
Start:
54,236,440 bp from pter
End:
54,239,063 bp from pter
Size:
2,624 bases
Orientation:
Plus strand

Genomic View for SSBP3-AS1 Gene

Genes around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSBP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSBP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSBP3-AS1 Gene

Proteins for SSBP3-AS1 Gene

  • Protein details for SSBP3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z2R9-SSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein SSBP3-AS1
    Protein Accession:
    Q7Z2R9

    Protein attributes for SSBP3-AS1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSBP3-AS1 Gene

Post-translational modifications for SSBP3-AS1 Gene

No data available for DME Specific Peptides for SSBP3-AS1 Gene

Domains & Families for SSBP3-AS1 Gene

Protein Domains for SSBP3-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SSBP3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Function for SSBP3-AS1 Gene

Phenotypes for SSBP3-AS1 Gene

GenomeRNAi human phenotypes for SSBP3-AS1:
genes like me logo Genes that share phenotypes with SSBP3-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSBP3-AS1 Gene

Localization for SSBP3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for SSBP3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with SSBP3-AS1: view

No data available for Subcellular locations from COMPARTMENTS for SSBP3-AS1 Gene

Pathways & Interactions for SSBP3-AS1 Gene

SuperPathways for SSBP3-AS1 Gene

No Data Available

Interacting Proteins for SSBP3-AS1 Gene

Gene Ontology (GO) - Biological Process for SSBP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSBP3-AS1 Gene

Transcripts for SSBP3-AS1 Gene

mRNA/cDNA for SSBP3-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSBP3-AS1 Gene

No ASD Table

Relevant External Links for SSBP3-AS1 Gene

GeneLoc Exon Structure for
SSBP3-AS1
ECgene alternative splicing isoforms for
SSBP3-AS1

Expression for SSBP3-AS1 Gene

Protein differential expression in normal tissues from HIPED for SSBP3-AS1 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SSBP3-AS1 Gene



Protein tissue co-expression partners for SSBP3-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SSBP3-AS1 Gene

Orthologs for SSBP3-AS1 Gene

Evolution for SSBP3-AS1 Gene

ENSEMBL:
Gene Tree for SSBP3-AS1 (if available)
TreeFam:
Gene Tree for SSBP3-AS1 (if available)

No data available for Orthologs for SSBP3-AS1 Gene

Paralogs for SSBP3-AS1 Gene

No data available for Paralogs for SSBP3-AS1 Gene

Variants for SSBP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSBP3-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10127740 -- 54,236,552(+) TTACA(G/T)GCGTA intron-variant, nc-transcript-variant
rs111627172 -- 54,237,929(+) CACTC(A/G)AGGCA intron-variant, nc-transcript-variant
rs11206312 -- 54,238,894(+) CGGGC(A/G)CCCTG intron-variant, nc-transcript-variant
rs112238325 -- 54,238,214(+) AACAC(-/CTCAG)GTGGG intron-variant, nc-transcript-variant
rs112384297 -- 54,238,515(+) CAGGC(C/T)GCAGC intron-variant, nc-transcript-variant

Variation tolerance for SSBP3-AS1 Gene

Gene Damage Index Score: 1.87; 35.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SSBP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSBP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SSBP3-AS1 Gene

Disorders for SSBP3-AS1 Gene

Relevant External Links for SSBP3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSBP3-AS1

No disorders were found for SSBP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSBP3-AS1 Gene

Publications for SSBP3-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64

Products for SSBP3-AS1 Gene

Sources for SSBP3-AS1 Gene

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