Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SSBP3-AS1 Gene

Subcategory (RNA class) for SSBP3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SSBP3-AS1 Gene

  • SSBP3 Antisense RNA 1 2 3 4 5
  • C1orf191 3 4
  • Chromosome 1 Open Reading Frame 191 2
  • SSBP3 Antisense Gene Protein 1 4
  • MSTP128 3
  • MST128 3

External Ids for SSBP3-AS1 Gene

ORGUL Members for SSBP3-AS1 Gene

Previous HGNC Symbols for SSBP3-AS1 Gene

  • C1orf191

Previous GeneCards Identifiers for SSBP3-AS1 Gene

  • GC01P054704

Summaries for SSBP3-AS1 Gene

GeneCards Summary for SSBP3-AS1 Gene

SSBP3-AS1 (SSBP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSBP3-AS1 Gene

Genomics for SSBP3-AS1 Gene

Regulatory Elements for SSBP3-AS1 Gene

Enhancers for SSBP3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G054218 1.4 Ensembl ENCODE dbSUPER 55.5 -16.3 -16305 3.1 ZFP64 RAD21 EGR1 ZNF354C SCRT2 EGR2 ZNF680 ZNF654 SP3 ZBTB11 SSBP3-AS1 MAGOH CYB5RL PARS2 HSPB11 C1orf123 MRPL37 CDCP2 USP24 PIR51493
GH01G054258 1.6 dbSUPER 18.5 +23.5 23460 2.7 ZFHX2 NFIC NFIB SCRT2 NFE2 NFE2L2 EGR2 SSBP3-AS1 SSBP3 ENSG00000225632 GC01P054263
GH01G054271 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.4 +40.1 40102 10.6 HDGF PKNOX1 ARNT FEZF1 ZNF2 YY1 CBX5 ZNF143 FOS KLF13 SSBP3-AS1 SSBP3 TMEM59 HSPB11 TCEANC2 ENSG00000237453 TTC22 ENSG00000225632 GC01P054263
GH01G053942 1.2 ENCODE 24.4 -291.1 -291128 5.4 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF766 MAGOH SSBP3-AS1 CYB5RL HSPB11 ENSG00000259818 TCEANC2 LRRC42 GC01P053939
GH01G054051 1.2 ENCODE 23.6 -183.3 -183286 3.7 CREB3L1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC MAGOH TCEANC2 SSBP3-AS1 HSPB11 PARS2 CYB5RL C1orf123 LDLRAD1 NDC1 RPL37P7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SSBP3-AS1 Gene

Chromosome:
1
Start:
54,236,440 bp from pter
End:
54,239,063 bp from pter
Size:
2,624 bases
Orientation:
Plus strand

Genomic View for SSBP3-AS1 Gene

Genes around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSBP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSBP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSBP3-AS1 Gene

Proteins for SSBP3-AS1 Gene

  • Protein details for SSBP3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z2R9-SSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein SSBP3-AS1
    Protein Accession:
    Q7Z2R9

    Protein attributes for SSBP3-AS1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSBP3-AS1 Gene

Post-translational modifications for SSBP3-AS1 Gene

No data available for DME Specific Peptides for SSBP3-AS1 Gene

Domains & Families for SSBP3-AS1 Gene

Protein Domains for SSBP3-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SSBP3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Function for SSBP3-AS1 Gene

Phenotypes for SSBP3-AS1 Gene

GenomeRNAi human phenotypes for SSBP3-AS1:
genes like me logo Genes that share phenotypes with SSBP3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSBP3-AS1 Gene

Localization for SSBP3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SSBP3-AS1 gene
Compartment Confidence
extracellular 3
mitochondrion 3
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SSBP3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with SSBP3-AS1: view

Pathways & Interactions for SSBP3-AS1 Gene

SuperPathways for SSBP3-AS1 Gene

No Data Available

Interacting Proteins for SSBP3-AS1 Gene

Gene Ontology (GO) - Biological Process for SSBP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSBP3-AS1 Gene

Drugs & Compounds for SSBP3-AS1 Gene

No Compound Related Data Available

Transcripts for SSBP3-AS1 Gene

mRNA/cDNA for SSBP3-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSBP3-AS1 Gene

No ASD Table

Relevant External Links for SSBP3-AS1 Gene

GeneLoc Exon Structure for
SSBP3-AS1
ECgene alternative splicing isoforms for
SSBP3-AS1

Expression for SSBP3-AS1 Gene

Protein differential expression in normal tissues from HIPED for SSBP3-AS1 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SSBP3-AS1 Gene



Protein tissue co-expression partners for SSBP3-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSBP3-AS1 Gene

Orthologs for SSBP3-AS1 Gene

Evolution for SSBP3-AS1 Gene

ENSEMBL:
Gene Tree for SSBP3-AS1 (if available)
TreeFam:
Gene Tree for SSBP3-AS1 (if available)

No data available for Orthologs for SSBP3-AS1 Gene

Paralogs for SSBP3-AS1 Gene

No data available for Paralogs for SSBP3-AS1 Gene

Variants for SSBP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSBP3-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000725257 -- 54,235,100(+) AGTAC(C/G)TCCGG intron-variant, upstream-variant-2KB
rs1000771610 -- 54,235,362(+) CTGCA(A/G)CCTCC intron-variant, upstream-variant-2KB
rs1000851335 -- 54,235,037(+) CTAGT(A/G)TCACC intron-variant, upstream-variant-2KB
rs1002729039 -- 54,237,482(+) AGAGA(C/G)TCAAT intron-variant, nc-transcript-variant
rs1002780571 -- 54,237,783(+) AACAC(G/T)GAATC intron-variant, nc-transcript-variant

Variation tolerance for SSBP3-AS1 Gene

Gene Damage Index Score: 1.87; 35.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SSBP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSBP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SSBP3-AS1 Gene

Disorders for SSBP3-AS1 Gene

Relevant External Links for SSBP3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SSBP3-AS1

No disorders were found for SSBP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSBP3-AS1 Gene

Publications for SSBP3-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64

Products for SSBP3-AS1 Gene

Sources for SSBP3-AS1 Gene

Content
Loading form....