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Aliases for SRSF8 Gene

Aliases for SRSF8 Gene

  • Serine And Arginine Rich Splicing Factor 8 2 3 5
  • Splicing Factor, Arginine/Serine-Rich 2B 2 3 4
  • Serine/Arginine-Rich Splicing Factor 8 2 3
  • Pre-MRNA-Splicing Factor SRP46 3 4
  • SR Splicing Factor 8 2 3
  • SFRS2B 3 4
  • SRP46 3 4
  • Splicing Factor, Arginine/Serine-Rich, 46kD 3
  • Splicing Factor SRp46 4
  • DSM-1 3

External Ids for SRSF8 Gene

Previous HGNC Symbols for SRSF8 Gene

  • SFRS2B

Previous GeneCards Identifiers for SRSF8 Gene

  • GC11P094801
  • GC11P090864

Summaries for SRSF8 Gene

Entrez Gene Summary for SRSF8 Gene

  • This gene encodes a member of a family of proteins containing a ribonucleoprotein (RNP)-type RNA binding motif and a carboxyl-terminal arginine-serine-rich (RS) domain. The encoded protein functions as a pre-mRNA splicing factor. There is a pseudogene for this gene on chromosome 7. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2013]

GeneCards Summary for SRSF8 Gene

SRSF8 (Serine And Arginine Rich Splicing Factor 8) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Influenza A. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is SRSF2.

UniProtKB/Swiss-Prot for SRSF8 Gene

  • Involved in pre-mRNA alternative splicing.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRSF8 Gene

Genomics for SRSF8 Gene

Regulatory Elements for SRSF8 Gene

Enhancers for SRSF8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G095088 1.2 ENCODE dbSUPER 17.1 +23.0 22992 2.9 HDGF ATF1 ARID4B SIN3A ZNF48 YY1 ZNF143 ZNF207 SP3 REST SRSF8 CEP57 LOC101929295 KDM4E ENDOD1 GC11P095093
GH11G095066 1.4 ENCODE dbSUPER 13.3 +1.0 1021 3.2 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 ENDOD1 SRSF8 LOC101929295 KDM4E CWC15 KDM4D GC11P095067
GH11G095074 1.2 Ensembl ENCODE dbSUPER 14.4 +8.1 8129 1.0 ZNF263 SMARCC1 USF2 NR2F2 OSR2 ZFHX2 NFIC RAD51 SCRT2 PRDM10 SRSF8 LOC101929295 ENDOD1 GC11P095067 GC11P095083
GH11G095146 2 FANTOM5 Ensembl ENCODE dbSUPER 7.5 +83.7 83653 7.8 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YY1 ZNF766 CBX5 ZNF143 SESN3 SRSF8 LOC101929295 ENDOD1 LOC105369435 CWC15 KDM4E ENSG00000270578
GH11G095069 1 ENCODE dbSUPER 13.6 +3.0 2966 0.2 CTCF RB1 SAP130 ARID4B RAD21 ZNF143 SMC3 IKZF2 CREM GATAD2A SRSF8 LOC101929295 CWC15 KDM4D GC11P095067 GC11P095083
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRSF8 on UCSC Golden Path with GeneCards custom track

Promoters for SRSF8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000043546 1323 3201 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1

Genomic Location for SRSF8 Gene

Chromosome:
11
Start:
95,066,877 bp from pter
End:
95,071,227 bp from pter
Size:
4,351 bases
Orientation:
Plus strand

Genomic View for SRSF8 Gene

Genes around SRSF8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRSF8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRSF8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRSF8 Gene

Proteins for SRSF8 Gene

  • Protein details for SRSF8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BRL6-SRSF8_HUMAN
    Recommended name:
    Serine/arginine-rich splicing factor 8
    Protein Accession:
    Q9BRL6
    Secondary Accessions:
    • B2R6B8
    • Q6PF01
    • Q96TA3

    Protein attributes for SRSF8 Gene

    Size:
    282 amino acids
    Molecular mass:
    32288 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for SRSF8 Gene

    Alternative splice isoforms for SRSF8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SRSF8 Gene

Post-translational modifications for SRSF8 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SRSF8 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SRSF8 Gene

Domains & Families for SRSF8 Gene

Gene Families for SRSF8 Gene

Protein Domains for SRSF8 Gene

Suggested Antigen Peptide Sequences for SRSF8 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BRL6

UniProtKB/Swiss-Prot:

SRSF8_HUMAN :
  • Belongs to the splicing factor SR family.
Family:
  • Belongs to the splicing factor SR family.
genes like me logo Genes that share domains with SRSF8: view

Function for SRSF8 Gene

Molecular function for SRSF8 Gene

UniProtKB/Swiss-Prot Function:
Involved in pre-mRNA alternative splicing.

Gene Ontology (GO) - Molecular Function for SRSF8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA,IDA 22658674
GO:0005515 protein binding IPI 23602568
genes like me logo Genes that share ontologies with SRSF8: view
genes like me logo Genes that share phenotypes with SRSF8: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRSF8 Gene

Localization for SRSF8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SRSF8 Gene

Gene Ontology (GO) - Cellular Components for SRSF8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA,IEA --
GO:0005829 cytosol IDA --
GO:0016607 nuclear speck IDA --
genes like me logo Genes that share ontologies with SRSF8: view

No data available for Subcellular locations from COMPARTMENTS for SRSF8 Gene

Pathways & Interactions for SRSF8 Gene

genes like me logo Genes that share pathways with SRSF8: view

Pathways by source for SRSF8 Gene

2 KEGG pathways for SRSF8 Gene

Interacting Proteins for SRSF8 Gene

Gene Ontology (GO) - Biological Process for SRSF8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
genes like me logo Genes that share ontologies with SRSF8: view

No data available for SIGNOR curated interactions for SRSF8 Gene

Drugs & Compounds for SRSF8 Gene

No Compound Related Data Available

Transcripts for SRSF8 Gene

mRNA/cDNA for SRSF8 Gene

Unigene Clusters for SRSF8 Gene

Serine/arginine-rich splicing factor 8:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SRSF8 Gene

No ASD Table

Relevant External Links for SRSF8 Gene

GeneLoc Exon Structure for
SRSF8
ECgene alternative splicing isoforms for
SRSF8

Expression for SRSF8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRSF8 Gene

Protein differential expression in normal tissues from HIPED for SRSF8 Gene

This gene is overexpressed in Heart (24.2), Blymphocyte (16.4), CD8 Tcells (8.4), and Pancreas (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SRSF8 Gene



Protein tissue co-expression partners for SRSF8 Gene

NURSA nuclear receptor signaling pathways regulating expression of SRSF8 Gene:

SRSF8

SOURCE GeneReport for Unigene cluster for SRSF8 Gene:

Hs.476680

mRNA Expression by UniProt/SwissProt for SRSF8 Gene:

Q9BRL6-SRSF8_HUMAN
Tissue specificity: Strongly expressed in pancreas, spleen and prostate. Weakly expressed in lung, liver and thymus.
genes like me logo Genes that share expression patterns with SRSF8: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRSF8 Gene

Orthologs for SRSF8 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SRSF8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SRSF8 34
  • 99.65 (n)
Species where no ortholog for SRSF8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SRSF8 Gene

ENSEMBL:
Gene Tree for SRSF8 (if available)
TreeFam:
Gene Tree for SRSF8 (if available)

Paralogs for SRSF8 Gene

Paralogs for SRSF8 Gene

(7) SIMAP similar genes for SRSF8 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for SRSF8 Gene

genes like me logo Genes that share paralogs with SRSF8: view

Variants for SRSF8 Gene

Sequence variations from dbSNP and Humsavar for SRSF8 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000083272 -- 95,070,262(+) TACTC(A/G)GAGGC nc-transcript-variant, utr-variant-3-prime
rs1002448043 -- 95,065,282(+) TGGTA(A/T)GAGCA upstream-variant-2KB
rs1004931293 -- 95,067,753(+) CTACA(C/G)CAGAT nc-transcript-variant, reference, missense
rs1005344586 -- 95,071,609(+) TTGGA(C/T)ATCCT downstream-variant-500B
rs1006201696 -- 95,066,090(+) ATTTA(G/T)AAACT upstream-variant-2KB

Relevant External Links for SRSF8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRSF8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRSF8 Gene

Disorders for SRSF8 Gene

Relevant External Links for SRSF8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRSF8

No disorders were found for SRSF8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRSF8 Gene

Publications for SRSF8 Gene

  1. Characterization of SRp46, a novel human SR splicing factor encoded by a PR264/SC35 retropseudogene. (PMID: 9671500) Soret J. … Perbal B. (Mol. Cell. Biol. 1998) 2 3 4 22 64
  2. A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). (PMID: 20516191) Manley J.L. … Krainer A.R. (Genes Dev. 2010) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for SRSF8 Gene

Sources for SRSF8 Gene

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