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SRRM3 Gene

protein-coding   GIFtS: 41
GCID: GC07P075831

Serine/Arginine Repetitive Matrix 3

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Serine/Arginine Repetitive Matrix 31 2
Serine/Arginine Repetitive Matrix Protein 32
SRRM2-Like Protein2

External Ids:    HGNC: 267291   Entrez Gene: 2221832   Ensembl: ENSG000001776797   UniProtKB: A6NNA23   

Export aliases for SRRM3 gene to outside databases

Previous GC identifers: GC07P075752 GC07P070917


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SRRM3 Gene:
SRRM3 (serine/arginine repetitive matrix 3) is a protein-coding gene. Diseases associated with SRRM3 include endotheliitis. An important paralog of this gene is SRRM2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000007.14  NC_018918.2  NT_007933.16  
Regulatory elements:
   Search for regulatory transcription factor binding sites for SRRM3
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for SRRM3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SRRM3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q11.23   Ensembl cytogenetic band:  7q11.23   HGNC cytogenetic band: 7q11.23

SRRM3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SRRM3 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P075831:  view genomic region     (about GC identifiers)

Start:
75,831,216 bp from pter      End:
75,916,605 bp from pter
Size:
85,390 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 75,164,280-75,249,669     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: SRRM3_HUMAN, A6NNA2 (See protein sequence)
Recommended Name: Serine/arginine repetitive matrix protein 3  
Size: 597 amino acids; 65249 Da
Secondary accessions: A6ND75

Explore the universe of human proteins at neXtProt for SRRM3: NX_A6NNA2

Explore proteomics data for SRRM3 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See SRRM3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001103669.1  
    ENSEMBL proteins: 
     ENSP00000325298   ENSP00000410209   ENSP00000373454  

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    Cloud-Clone Corp. CLIAs for SRRM3


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR013170 mRNA_splic_Cwf21

    Graphical View of Domain Structure for InterPro Entry A6NNA2

    ProtoNet protein and cluster: A6NNA2

    UniProtKB/Swiss-Prot: SRRM3_HUMAN, A6NNA2
    Similarity: Belongs to the CWC21 family


    SRRM3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Phenotypes:
         1 GenomeRNAi human phenotype for SRRM3:
     Decreased homologous recombina 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SRRM3
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    hsa-mir-335-5p (MIRT017701)

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    Selected qRT-PCR Assays for microRNAs that regulate SRRM3 (see all 18):
    hsa-miR-124* hsa-miR-125a-5p hsa-miR-185* hsa-miR-765 hsa-miR-583 hsa-miR-125b hsa-miR-3116 hsa-miR-375
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SRRM3


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2
    cytoskeleton1
    plasma membrane1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SRRM3
    Interactions:

        Search GeneGlobe Interaction Network for SRRM3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for SRRM3 (ENSP000003734544) via UniProtKB, MINT, STRING, and/or I2D (see all 52)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DHX38ENSP000002684824STRING: ENSP00000268482
    ISY1ENSP000003769734STRING: ENSP00000376973
    SART1ENSP000003104484STRING: ENSP00000310448
    SNRNP200ENSP000003171234STRING: ENSP00000317123
    SYF2ENSP000002362734STRING: ENSP00000236273
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SRRM3



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for SRRM3 gene (2 alternative transcripts): 
    NM_001110199.1  NM_001039212.1  

    Unigene Cluster for SRRM3:

    Serine/arginine repetitive matrix 3
    Hs.511025  [show with all ESTs]
    Unigene Representative Sequence: NM_001110199
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000326382 ENST00000479294 ENST00000464752(uc011kgi.2) ENST00000479284
    ENST00000413003(uc003uet.1) ENST00000388802(uc010ldi.2)
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate SRRM3 (see all 18):
    hsa-miR-124* hsa-miR-125a-5p hsa-miR-185* hsa-miR-765 hsa-miR-583 hsa-miR-125b hsa-miR-3116 hsa-miR-375
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SRRM3
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    OriGene ORF clones in mouse, rat for SRRM3
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: SRRM3 (NM_001110199)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for SRRM3
    Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SRRM3
    Primer
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    OriGene qPCR primer pairs and template standards for SRRM3
    OriGene qSTAR qPCR primer pairs in human, mouse for SRRM3
    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat SRRM3
      QuantiTect SYBR Green Assays in human, mouse, rat SRRM3
      QuantiFast Probe-based Assays in human, mouse, rat SRRM3

    Additional mRNA sequence: 

    AK092590.1 AK094397.1 BC029292.1 BC063788.1 BC071856.1 BC096755.1 BC141904.1 

    5 DOTS entries:

    DT.97763781  DT.97793074  DT.405787  DT.65288766  DT.95328808 

    Selected AceView cDNA sequences (see all 56):

    CR623032 BU742027 AK094397 BE858467 BM717942 BM714195 NM_153043 AX747617 
    BF593867 BE223041 AK092590 BM699369 BM725697 BQ278985 F09463 BU599474 
    BM723979 BX506971 BU632591 BU857028 BI823549 BC063788 BM926319 AW136649 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SRRM3 expression in normal human tissues (normalized intensities)      SRRM3 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGTCTTCCT
    SRRM3 Expression
    About this image


    SRRM3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Eye (Sensory Organs)
             Retina
     
     Endothelium (Cardiovascular System)
             Endothelial Cells Blood Brain Barrier
     
     Brain (Nervous System)
             Endothelial Cells Blood Brain Barrier
    SRRM3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SRRM3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.511025
        Custom PCR Arrays for SRRM3
    Primer
    Products:
    OriGene qPCR primer pairs and template standards for SRRM3
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat SRRM3
    QuantiTect SYBR Green Assays in human, mouse, rat SRRM3
    QuantiFast Probe-based Assays in human, mouse, rat SRRM3
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SRRM3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for SRRM3 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Srrm35 serine/arginine repetitive matrix 3   --   5 (75.42 cM) 135806890 
    chicken
    (Gallus gallus)
    Aves SRRM36
    serine/arginine repetitive matrix 3
    50(a)
    1 ↔ 1
    19(4258499-4275358) ENSGALG00000001932
    lizard
    (Anolis carolinensis)
    Reptilia SRRM36
    serine/arginine repetitive matrix 3
    50(a)
    1 ↔ 1
    GL343734.1(20325-60878)
    zebrafish
    (Danio rerio)
    Actinopterygii srrm26
    serine/arginine repetitive matrix 2
    11(a)
    1 → many
    3(32768348-32787254) ENSDARG00000037965
    fruit fly
    (Drosophila melanogaster)
    Insecta CG79716
    --
    6(a)
    1 → many
    3L(1654247-1665064)
    worm
    (Caenorhabditis elegans)
    Secernentea rsr-26
    Protein RSR-2 (rsr-2) mRNA, complete cds
    21(a)
    1 → many
    II(12225358-12227291) WBGene00013260


    ENSEMBL Gene Tree for SRRM3 (if available)
    TreeFam Gene Tree for SRRM3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SRRM3 gene
    SRRM22  
    1 SIMAP similar gene for SRRM3 using alignment to 3 protein entries:     SRRM3_HUMAN (see all proteins):
    SRRM2

    SRRM3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SRRM3 (see all 1674)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs774305661,2
    C,F--75829216(+) CATACA/GAAGAC 1 -- us2k11Minor allele frequency- G:0.11EA 120
    rs595400631,2
    C,F--75829232(+) ACAAAC/TATACA 1 -- us2k12Minor allele frequency- T:0.06WA 120
    rs1114060241,2
    C--75829235(+) AACATG/ACACTC 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs1444917231,2
    C--75829258(+) GCCTC-/TTGGTGT 1 -- us2k10--------
    rs1501470831,2
    --75829329(+) CTCAAA/GTCAGG 1 -- us2k10--------
    rs752974621,2
    C,F--75829351(+) ACTTCC/TAGTCC 1 -- us2k12Minor allele frequency- T:0.07NA EA 240
    rs797469221,2
    F--75829420(+) TTCCTG/CGTTTC 1 -- us2k11Minor allele frequency- C:0.03WA 118
    rs764087131,2
    C--75829540(+) CCAAGG/ATCACA 1 -- us2k14Minor allele frequency- A:0.19CSA WA NA EA 360
    rs1892755481,2
    --75829772(+) AGCCTG/TGGCAA 1 -- us2k10--------
    rs1173900081,2
    C,F--75829891(+) TGAGTC/TCAGGA 1 -- us2k11Minor allele frequency- T:0.13EA 120

    HapMap Linkage Disequilibrium report for SRRM3 (75831216 - 75916605 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10 variations for SRRM3:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2734684CNV Deletion23290073
    dgv120n16CNV Deletion17901297
    esv2734682CNV Deletion23290073
    esv2422494CNV Duplication17116639
    nsv888387CNV Loss21882294
    nsv888388CNV Loss21882294
    nsv519194CNV Loss19592680
    nsv528969CNV Gain19592680
    essv14753CNV CNV17122850
    dgv2104e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing SRRM3
    DNA2.0 Custom Variant and Variant Library Synthesis for SRRM3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for SRRM3:    About MalaCards
    endotheliitis


    SRRM3 for disorders           About GeneDecksing


    Export disorders for SRRM3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SRRM3 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SRRM3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (Nature 2003)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 222183 HGNC: 26729 AceView: FLJ37078 Ensembl:ENSG00000177679 euGenes: HUgn222183
    ECgene: SRRM3 H-InvDB: SRRM3

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SRRM3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SRRM3 gene:
    Search GeneIP for patents involving SRRM3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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