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Aliases for SRRM2-AS1 Gene

Subcategory (RNA class) for SRRM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SRRM2-AS1 Gene

  • SRRM2 Antisense RNA 1 2 3 5
  • SRRM2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2270P14.3 3

External Ids for SRRM2-AS1 Gene

Previous GeneCards Identifiers for SRRM2-AS1 Gene

  • GC16M002790

Summaries for SRRM2-AS1 Gene

GeneCards Summary for SRRM2-AS1 Gene

SRRM2-AS1 (SRRM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRRM2-AS1 Gene

Genomics for SRRM2-AS1 Gene

Regulatory Elements for SRRM2-AS1 Gene

Enhancers for SRRM2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F002699 0.8 ENCODE 11.8 +53.0 52986 0.2 SCRT2 SRRM2-AS1 GC16P002783 GC16P002812 GC16P002846 PIR57562
GH16F002772 0.5 ENCODE 11.6 -20.6 -20572 0.8 CTCF CHD4 RAD21 POLR2A ADNP SMC3 ZNF600 ZNF652 EGR2 ZNF639 SRRM2 PRSS27 SRRM2-AS1 GC16P002845 PIR54527
GH16F002689 1.4 FANTOM5 Ensembl ENCODE 11.6 +60.9 60937 4.4 DRAP1 SAP130 ARID4B DMAP1 ZIC2 KMT2B ZNF48 ZNF335 POLR2A NR2F6 KCTD5 PRSS27 SRRM2-AS1 SRRM2 PAQR4 KREMEN2 ABCA17P ABCA3 ENSG00000269937 GC16M002686
GH16F002774 0.4 ENCODE 11.5 -24.7 -24681 4.6 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF207 ZNF143 FOS KLF13 ZNF205 SRRM2 SRRM2-AS1 PRSS27 PAQR4 KREMEN2 SNHG19 ENSG00000260095 PRSS33 PRSS41
GH16F002662 1.2 Ensembl ENCODE 10.9 +88.5 88496 2.2 ATF1 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF121 KLF7 SP3 TSHZ1 ENSG00000261613 ERVK13-1 TIGD7 NME3 ZNF213-AS1 CLUAP1 MTND1P8 ZNF174 FLYWCH2 ENSG00000269937
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SRRM2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SRRM2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000502599 -700 3001 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9
ENSR00001799046 1100 201 HDGF ARNT ZNF740 SIN3A BACH1 ZBTB40 TFDP1 FOXK2 POLR2A MLLT1

Genomic Location for SRRM2-AS1 Gene

Chromosome:
16
Start:
2,737,076 bp from pter
End:
2,752,600 bp from pter
Size:
15,525 bases
Orientation:
Minus strand

Genomic View for SRRM2-AS1 Gene

Genes around SRRM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRRM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRRM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRRM2-AS1 Gene

Proteins for SRRM2-AS1 Gene

Post-translational modifications for SRRM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRRM2-AS1 Gene

Domains & Families for SRRM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRRM2-AS1 Gene

Function for SRRM2-AS1 Gene

Animal Model Products

miRNA for SRRM2-AS1 Gene

miRTarBase miRNAs that target SRRM2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SRRM2-AS1 Gene

Localization for SRRM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SRRM2-AS1 Gene

Pathways & Interactions for SRRM2-AS1 Gene

SuperPathways for SRRM2-AS1 Gene

No Data Available

Interacting Proteins for SRRM2-AS1 Gene

Gene Ontology (GO) - Biological Process for SRRM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRRM2-AS1 Gene

Transcripts for SRRM2-AS1 Gene

mRNA/cDNA for SRRM2-AS1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SRRM2-AS1 Gene

SRRM2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SRRM2-AS1 Gene

No ASD Table

Relevant External Links for SRRM2-AS1 Gene

GeneLoc Exon Structure for
SRRM2-AS1
ECgene alternative splicing isoforms for
SRRM2-AS1

Expression for SRRM2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRRM2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SRRM2-AS1 Gene

This gene is overexpressed in Testis (x19.9).

SOURCE GeneReport for Unigene cluster for SRRM2-AS1 Gene:

Hs.311208
genes like me logo Genes that share expression patterns with SRRM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SRRM2-AS1 Gene

Orthologs for SRRM2-AS1 Gene

Evolution for SRRM2-AS1 Gene

ENSEMBL:
Gene Tree for SRRM2-AS1 (if available)
TreeFam:
Gene Tree for SRRM2-AS1 (if available)

No data available for Orthologs for SRRM2-AS1 Gene

Paralogs for SRRM2-AS1 Gene

No data available for Paralogs for SRRM2-AS1 Gene

Variants for SRRM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SRRM2-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10657016 -- 2,746,321(+) TTTTT(-/TT)TGGAG intron-variant, upstream-variant-2KB
rs111319216 -- 2,736,700(+) ATCCC(A/G)GGAGG downstream-variant-500B
rs111325570 -- 2,751,605(+) TCGTA(A/G)TAACA intron-variant, upstream-variant-2KB
rs111699221 -- 2,744,247(+) ACTTC(C/T)AGCCG intron-variant
rs111908895 -- 2,748,055(+) GGATC(A/G)TGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SRRM2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2750710 CNV gain 17666407
esv2760067 CNV gain+loss 17122850
esv3348944 CNV insertion 20981092
esv3637636 CNV loss 21293372
nsv471073 CNV loss 18288195
nsv833123 CNV gain+loss 17160897

Relevant External Links for SRRM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRRM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SRRM2-AS1 Gene

Disorders for SRRM2-AS1 Gene

Relevant External Links for SRRM2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRRM2-AS1

No disorders were found for SRRM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRRM2-AS1 Gene

Publications for SRRM2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SRRM2-AS1 Gene

Sources for SRRM2-AS1 Gene

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