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Aliases for SRRM2-AS1 Gene

Subcategory (RNA class) for SRRM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SRRM2-AS1 Gene

  • SRRM2 Antisense RNA 1 2 3 5
  • SRRM2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2270P14.3 3

External Ids for SRRM2-AS1 Gene

Previous GeneCards Identifiers for SRRM2-AS1 Gene

  • GC16M002790

Summaries for SRRM2-AS1 Gene

GeneCards Summary for SRRM2-AS1 Gene

SRRM2-AS1 (SRRM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRRM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRRM2-AS1 Gene

Genomics for SRRM2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SRRM2-AS1 Gene

Promoters and enhancers for SRRM2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I002750 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.5 -472 4.7 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 SRRM2 GC16P003013 SRRM2-AS1 ZNF75A ERVK13-1 TSC2 ZNF263 ENSG00000255513 LOC105371055 SNORA64
GH16I002774 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.6 -24.7 -24681 4.6 CLOCK SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B ZNF766 GC16P002987 PIR54527 ENSG00000276791 ELOB MTCO1P28 SRRM2 SRRM2-AS1 TIGD7 PRSS27 CLUAP1
GH16I002881 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.5 -130.6 -130551 2.7 HDGF PKNOX1 CLOCK ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B FLYWCH2 TBL3 FLYWCH1 ENSG00000261938 CREBBP ZNF598 TIGD7 SNHG19 ZNF597 CLUAP1
GH16I002867 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 10.2 -115.9 -115876 2 MLX DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D ZNF610 GLIS1 LOC101929566 GC16P003028 FLYWCH2 ZG16B FLYWCH1 PRSS41 SNORA3C PRSS33 ELOB SRRM2-AS1
GH16I002672 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 10.9 +78.8 78805 2.8 PKNOX1 ATF1 SMAD1 ARNT ARID4B SIN3A ZNF143 KLF13 SP3 NFYC ERVK13-1 ENSG00000261613 ENSG00000269937 PRSS27 SRRM2-AS1 ABCA17P ABCA3 GC16P003029 PIR59611
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SRRM2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SRRM2-AS1 Gene

Genomic Locations for SRRM2-AS1 Gene
chr16:2,737,076-2,752,600
(GRCh38/hg38)
Size:
15,525 bases
Orientation:
Minus strand
chr16:2,787,077-2,802,601
(GRCh37/hg19)

Genomic View for SRRM2-AS1 Gene

Genes around SRRM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRRM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRRM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRRM2-AS1 Gene

Proteins for SRRM2-AS1 Gene

Post-translational modifications for SRRM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRRM2-AS1 Gene

Domains & Families for SRRM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRRM2-AS1 Gene

Function for SRRM2-AS1 Gene

Phenotypes From GWAS Catalog for SRRM2-AS1 Gene

Animal Model Products

miRNA for SRRM2-AS1 Gene

miRTarBase miRNAs that target SRRM2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SRRM2-AS1 Gene

Localization for SRRM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRRM2-AS1 Gene

Pathways & Interactions for SRRM2-AS1 Gene

SuperPathways for SRRM2-AS1 Gene

No Data Available

Interacting Proteins for SRRM2-AS1 Gene

Gene Ontology (GO) - Biological Process for SRRM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRRM2-AS1 Gene

Drugs & Compounds for SRRM2-AS1 Gene

No Compound Related Data Available

Transcripts for SRRM2-AS1 Gene

mRNA/cDNA for SRRM2-AS1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SRRM2-AS1 Gene

SRRM2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SRRM2-AS1 Gene

No ASD Table

Relevant External Links for SRRM2-AS1 Gene

GeneLoc Exon Structure for
SRRM2-AS1
ECgene alternative splicing isoforms for
SRRM2-AS1

Expression for SRRM2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRRM2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SRRM2-AS1 Gene

This gene is overexpressed in Testis (x19.9).

SOURCE GeneReport for Unigene cluster for SRRM2-AS1 Gene:

Hs.311208
genes like me logo Genes that share expression patterns with SRRM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRRM2-AS1 Gene

Orthologs for SRRM2-AS1 Gene

Evolution for SRRM2-AS1 Gene

ENSEMBL:
Gene Tree for SRRM2-AS1 (if available)
TreeFam:
Gene Tree for SRRM2-AS1 (if available)

No data available for Orthologs for SRRM2-AS1 Gene

Paralogs for SRRM2-AS1 Gene

No data available for Paralogs for SRRM2-AS1 Gene

Variants for SRRM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SRRM2-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000029672 -- 2,753,336(-) C/T upstream_transcript_variant
rs1000180573 -- 2,740,804(-) T/G intron_variant
rs1000333026 -- 2,745,934(-) A/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000333278 -- 2,753,017(-) C/A upstream_transcript_variant
rs1000512732 -- 2,741,224(-) T/C intron_variant, non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SRRM2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2750710 CNV gain 17666407
esv2760067 CNV gain+loss 17122850
esv3348944 CNV insertion 20981092
esv3637636 CNV loss 21293372
nsv471073 CNV loss 18288195
nsv833123 CNV gain+loss 17160897

Additional Variant Information for SRRM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRRM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SRRM2-AS1 Gene

Disorders for SRRM2-AS1 Gene

Additional Disease Information for SRRM2-AS1

No disorders were found for SRRM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRRM2-AS1 Gene

Publications for SRRM2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SRRM2-AS1 Gene

Sources for SRRM2-AS1 Gene

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