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Aliases for SRP14-AS1 Gene

Subcategory (RNA class) for SRP14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRP14-AS1 Gene

  • SRP14 Antisense RNA1 (Head To Head) 2 3 5

External Ids for SRP14-AS1 Gene

Previous GeneCards Identifiers for SRP14-AS1 Gene

  • GC15P040333

Summaries for SRP14-AS1 Gene

GeneCards Summary for SRP14-AS1 Gene

SRP14-AS1 (SRP14 Antisense RNA1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRP14-AS1 Gene

Genomics for SRP14-AS1 Gene

Regulatory Elements for SRP14-AS1 Gene

Enhancers for SRP14-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F040037 1.1 ENCODE 48.2 +0.1 51 3.2 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 CBX5 SRP14-AS1 EIF2AK4 SRP14 GC15M040064
GH15F040090 2.2 VISTA FANTOM5 ENCODE 17 +61.0 61048 18.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ENSG00000259211 DNAJC17 BMF CHST14 RPLP0P10 BAHD1 SRP14 EIF2AK4 SRP14-AS1 ENSG00000259432
GH15F040080 1.7 FANTOM5 Ensembl ENCODE 20.6 +43.0 42961 3.9 PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF48 GATA2 SP5 NFYC MXD4 SRP14 SRP14-AS1 BMF EIF2AK4 ANKRD63 BUB1B PAK6 C15orf56 PLCB2 RPLP0P10
GH15F040087 1.3 Ensembl ENCODE 20.7 +49.3 49314 3.2 ZNF133 ARID4B DMAP1 ZNF48 YY1 ZNF121 FOS ZNF263 SP5 MXD4 SRP14-AS1 BMF SRP14 BUB1B EIF2AK4 PAK6 C15orf56 ENSG00000259409 PIR48167
GH15F040068 1.3 Ensembl ENCODE 17.7 +30.0 29998 2.6 HDGF PKNOX1 FEZF1 GLI4 ZNF48 BRCA1 ZNF2 YY1 GLIS2 ZNF207 SRP14 SRP14-AS1 EIF2AK4 BMF PAK6 C15orf56 PLCB2 RPLP0P10 LOC102724328 GC15M040064
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRP14-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SRP14-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000406536 -311 2801 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 CBX5

Genomic Location for SRP14-AS1 Gene

Chromosome:
15
Start:
40,039,311 bp from pter
End:
40,067,509 bp from pter
Size:
28,199 bases
Orientation:
Plus strand

Genomic View for SRP14-AS1 Gene

Genes around SRP14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRP14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRP14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRP14-AS1 Gene

Proteins for SRP14-AS1 Gene

Post-translational modifications for SRP14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRP14-AS1 Gene

Domains & Families for SRP14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRP14-AS1 Gene

Function for SRP14-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRP14-AS1 Gene

Localization for SRP14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SRP14-AS1 Gene

Pathways & Interactions for SRP14-AS1 Gene

SuperPathways for SRP14-AS1 Gene

No Data Available

Interacting Proteins for SRP14-AS1 Gene

Gene Ontology (GO) - Biological Process for SRP14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRP14-AS1 Gene

Transcripts for SRP14-AS1 Gene

mRNA/cDNA for SRP14-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SRP14-AS1 Gene

No ASD Table

Relevant External Links for SRP14-AS1 Gene

GeneLoc Exon Structure for
SRP14-AS1
ECgene alternative splicing isoforms for
SRP14-AS1

Expression for SRP14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRP14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SRP14-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.0).
genes like me logo Genes that share expression patterns with SRP14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SRP14-AS1 Gene

Orthologs for SRP14-AS1 Gene

Evolution for SRP14-AS1 Gene

ENSEMBL:
Gene Tree for SRP14-AS1 (if available)
TreeFam:
Gene Tree for SRP14-AS1 (if available)

No data available for Orthologs for SRP14-AS1 Gene

Paralogs for SRP14-AS1 Gene

No data available for Paralogs for SRP14-AS1 Gene

Variants for SRP14-AS1 Gene

Sequence variations from dbSNP and Humsavar for SRP14-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1010879 -- 40,041,714(-) gtgga(C/T)gctgc intron-variant
rs1059395 -- 40,038,317(-) TGTTA(A/C)GAGCT upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs10678211 -- 40,050,641(+) GCGTC(-/TGTG)TGTGT intron-variant
rs10851393 -- 40,048,812(+) CAGAG(A/G)CATCA intron-variant
rs11070246 -- 40,058,482(+) CCAAT(A/G)GTCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SRP14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3581641 CNV loss 25503493
esv3581640 CNV loss 25503493
esv3334538 CNV duplication 20981092
esv2749598 CNV deletion 23290073
esv2749596 CNV deletion 23290073
esv2606862 CNV insertion 19546169

Relevant External Links for SRP14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRP14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SRP14-AS1 Gene

Disorders for SRP14-AS1 Gene

Relevant External Links for SRP14-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRP14-AS1

No disorders were found for SRP14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRP14-AS1 Gene

Publications for SRP14-AS1 Gene

  1. Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma. (PMID: 22327514) Postel-Vinay S. … Delattre O. (Nat. Genet. 2012) 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SRP14-AS1 Gene

Sources for SRP14-AS1 Gene

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