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Aliases for SRP14-AS1 Gene

Subcategory (RNA class) for SRP14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRP14-AS1 Gene

  • SRP14 Antisense RNA1 (Head To Head) 2 3 5

External Ids for SRP14-AS1 Gene

Previous GeneCards Identifiers for SRP14-AS1 Gene

  • GC15P040333

Summaries for SRP14-AS1 Gene

GeneCards Summary for SRP14-AS1 Gene

SRP14-AS1 (SRP14 Antisense RNA1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRP14-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRP14-AS1 Gene

Genomics for SRP14-AS1 Gene

Regulatory Elements for SRP14-AS1 Gene

Enhancers for SRP14-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H040090 2.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 27.2 +61.0 61048 18 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ENSG00000259211 DNAJC17 BAHD1 RAD51-AS1 BMF CHST14 EIF2AK4 SRP14-AS1 RPLP0P10 ENSG00000259536
GH15H040037 1.3 ENCODE dbSUPER 48.2 +0.1 51 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 SRP14-AS1 EIF2AK4 SRP14 ENSG00000259536 BAHD1 GC15M040064
GH15H040080 1.9 FANTOM5 Ensembl ENCODE dbSUPER 17.2 +42.8 42806 3 PKNOX1 FOXA2 MLX ARID4B DMAP1 YY1 ZNF766 SP5 MXD4 NFYC SRP14 SRP14-AS1 BMF EIF2AK4 ANKRD63 PAK6 C15orf56 PLCB2 RPLP0P10 SPINT1
GH15H040088 1.5 Ensembl ENCODE dbSUPER 20.7 +49.8 49834 2 FOXA2 ARID4B DMAP1 YY1 SP5 MXD4 REST PPARG KAT8 NFIL3 SRP14-AS1 SRP14 BUB1B PAK6 C15orf56 BMF-AS1 PIR45495
GH15H040068 1.5 Ensembl ENCODE dbSUPER 17.7 +30.3 30315 1 HDGF PKNOX1 ARNT FEZF1 GLI4 ZNF2 BRCA1 YY1 GLIS2 ZNF143 SRP14 SRP14-AS1 EIF2AK4 BMF PAK6 C15orf56 CCDC32 RPLP0P10 PLCB2 GC15M040064
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRP14-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SRP14-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000075443 -211 2201 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143

Genomic Location for SRP14-AS1 Gene

Chromosome:
15
Start:
40,039,311 bp from pter
End:
40,067,509 bp from pter
Size:
28,199 bases
Orientation:
Plus strand

Genomic View for SRP14-AS1 Gene

Genes around SRP14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRP14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRP14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRP14-AS1 Gene

Proteins for SRP14-AS1 Gene

Post-translational modifications for SRP14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRP14-AS1 Gene

Domains & Families for SRP14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRP14-AS1 Gene

Function for SRP14-AS1 Gene

Phenotypes From GWAS Catalog for SRP14-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRP14-AS1 Gene

Localization for SRP14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRP14-AS1 Gene

Pathways & Interactions for SRP14-AS1 Gene

SuperPathways for SRP14-AS1 Gene

No Data Available

Interacting Proteins for SRP14-AS1 Gene

Gene Ontology (GO) - Biological Process for SRP14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRP14-AS1 Gene

Drugs & Compounds for SRP14-AS1 Gene

No Compound Related Data Available

Transcripts for SRP14-AS1 Gene

mRNA/cDNA for SRP14-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SRP14-AS1 Gene

No ASD Table

Relevant External Links for SRP14-AS1 Gene

GeneLoc Exon Structure for
SRP14-AS1
ECgene alternative splicing isoforms for
SRP14-AS1

Expression for SRP14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRP14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SRP14-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.0).
genes like me logo Genes that share expression patterns with SRP14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRP14-AS1 Gene

Orthologs for SRP14-AS1 Gene

Evolution for SRP14-AS1 Gene

ENSEMBL:
Gene Tree for SRP14-AS1 (if available)
TreeFam:
Gene Tree for SRP14-AS1 (if available)

No data available for Orthologs for SRP14-AS1 Gene

Paralogs for SRP14-AS1 Gene

No data available for Paralogs for SRP14-AS1 Gene

Variants for SRP14-AS1 Gene

Sequence variations from dbSNP and Humsavar for SRP14-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000012944 -- 40,049,258(+) GAATT(C/G)TGCCA intron-variant
rs1000022299 -- 40,067,923(+) AGTCC(C/T)GGCCA downstream-variant-500B
rs1000200972 -- 40,055,671(+) GGGCT(A/G)CTCAC intron-variant
rs1000231974 -- 40,063,898(+) CAGTA(A/T)TCCTC intron-variant
rs1000243066 -- 40,052,326(+) GCTTG(G/T)TGGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SRP14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2606862 CNV insertion 19546169
esv2749596 CNV deletion 23290073
esv2749598 CNV deletion 23290073
esv3334538 CNV duplication 20981092
esv3581640 CNV loss 25503493
esv3581641 CNV loss 25503493

Relevant External Links for SRP14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRP14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SRP14-AS1 Gene

Disorders for SRP14-AS1 Gene

Relevant External Links for SRP14-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRP14-AS1

No disorders were found for SRP14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRP14-AS1 Gene

Publications for SRP14-AS1 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 60
  2. Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma. (PMID: 22327514) Postel-Vinay S … Delattre O (Nature genetics 2012) 3 60
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for SRP14-AS1 Gene

Sources for SRP14-AS1 Gene

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