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Aliases for SRMP1 Gene

Aliases for SRMP1 Gene

  • Spermidine Synthase Pseudogene 1 2 3 5
  • DJ1057D4.1 3

External Ids for SRMP1 Gene

Previous GeneCards Identifiers for SRMP1 Gene

  • GC20U990222
  • GC20P047126
  • GC20P047174
  • GC20P047175
  • GC20P045921
  • GC20P046488
  • GC20P043232

Summaries for SRMP1 Gene

GeneCards Summary for SRMP1 Gene

SRMP1 (Spermidine Synthase Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRMP1 Gene

Genomics for SRMP1 Gene

Regulatory Elements for SRMP1 Gene

Enhancers for SRMP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F047857 0.5 Ensembl ENCODE 0.8 -1.6 -1581 2.2 HDGF PKNOX1 KLF17 SIN3A YBX1 RAD21 ELK1 SCRT2 HSF1 ETV6 SULF2 LOC100419565 SRMP1 LOC105372636
GH20F047862 0.5 ENCODE 0.8 +3.5 3459 0.7 ELF3 SIX4 SOX13 HDGF ZKSCAN1 CTBP1 FOXK2 ZNF207 RCOR1 FOSL2 SRMP1 RNA5SP486
GH20F047863 0.2 ENCODE 0.8 +4.1 4056 0.2 HDGF MTA2 JUN DPF2 ZKSCAN1 NONO ARID3A CTBP1 ATF3 FOXK2 SRMP1 RNA5SP486
GH20F047859 1 ENCODE 0.8 -0.2 -215 0.1 SIX4 MTA2 YBX1 ZNF592 ZNF7 ARID3A MTA1 NBN SRMP1 LOC105372636
GH20F047844 0.6 ENCODE 0.3 -15.2 -15192 1.0 HDGF PKNOX1 SIN3A YBX1 RAD21 ZNF366 ZNF207 RCOR1 FOS GATAD2B LOC105372636 SRMP1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SRMP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SRMP1 Gene

Chromosome:
20
Start:
47,859,716 bp from pter
End:
47,860,949 bp from pter
Size:
1,234 bases
Orientation:
Plus strand

Genomic View for SRMP1 Gene

Genes around SRMP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRMP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRMP1 Gene

Proteins for SRMP1 Gene

Post-translational modifications for SRMP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRMP1 Gene

Domains & Families for SRMP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRMP1 Gene

Function for SRMP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRMP1 Gene

Localization for SRMP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SRMP1 Gene

Pathways & Interactions for SRMP1 Gene

SuperPathways for SRMP1 Gene

No Data Available

Interacting Proteins for SRMP1 Gene

Gene Ontology (GO) - Biological Process for SRMP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRMP1 Gene

Transcripts for SRMP1 Gene

mRNA/cDNA for SRMP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SRMP1 Gene

No ASD Table

Relevant External Links for SRMP1 Gene

GeneLoc Exon Structure for
SRMP1
ECgene alternative splicing isoforms for
SRMP1

Expression for SRMP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRMP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SRMP1 Gene:

SRMP1
genes like me logo Genes that share expression patterns with SRMP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SRMP1 Gene

Orthologs for SRMP1 Gene

Evolution for SRMP1 Gene

ENSEMBL:
Gene Tree for SRMP1 (if available)
TreeFam:
Gene Tree for SRMP1 (if available)

No data available for Orthologs for SRMP1 Gene

Paralogs for SRMP1 Gene

No data available for Paralogs for SRMP1 Gene

Variants for SRMP1 Gene

Relevant External Links for SRMP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRMP1 Gene

Disorders for SRMP1 Gene

Relevant External Links for SRMP1

Genetic Association Database (GAD)
SRMP1

No disorders were found for SRMP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRMP1 Gene

Publications for SRMP1 Gene

  1. Common variation in GPC5 is associated with acquired nephrotic syndrome. (PMID: 21441931) Okamoto K. … Noiri E. (Nat. Genet. 2011) 46 64
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 46 64
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64

Products for SRMP1 Gene

Sources for SRMP1 Gene

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