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Aliases for SRGAP3-AS4 Gene

Subcategory (RNA class) for SRGAP3-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRGAP3-AS4 Gene

  • SRGAP3 Antisense RNA 4 2 3 5
  • SRGAP3 Antisense RNA 4 (Non-Protein Coding) 2

External Ids for SRGAP3-AS4 Gene

Previous GeneCards Identifiers for SRGAP3-AS4 Gene

  • GC00U933278

Summaries for SRGAP3-AS4 Gene

GeneCards Summary for SRGAP3-AS4 Gene

SRGAP3-AS4 (SRGAP3 Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRGAP3-AS4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRGAP3-AS4 Gene

Genomics for SRGAP3-AS4 Gene

GeneHancer (GH) Regulatory Elements for SRGAP3-AS4 Gene

Promoters and enhancers for SRGAP3-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I009247 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -0.6 -585 3.9 HDGF PKNOX1 ATF1 ZNF133 SIN3A ZNF2 ZNF121 ZNF766 ZNF143 ATF7 SRGAP3-AS4 SRGAP3 EMC3-AS1 GC03P009233
GH03I009251 Enhancer 0.2 ENCODE 550.8 +1.5 1508 0.2 SRGAP3-AS4 GC03P009233 GC03M009298 SRGAP3
GH03I009279 Enhancer 0.7 ENCODE 0.3 +30.7 30673 1.2 CTCF ESRRA PKNOX1 RFX1 SIN3A BMI1 ZIC2 OSR2 ZNF335 ZFHX2 SRGAP3 SRGAP3-AS1 ENSG00000254485 ENSG00000231401 GC03M009298 SRGAP3-AS4
GH03I009301 Enhancer 1 Ensembl ENCODE 0.2 +52.4 52402 1.6 ELF3 ATF1 RB1 SIN3A BMI1 ZNF2 RAD21 ARID2 ZNF143 KLF7 GC03M009298 RAD18 ENSG00000199815 ENSG00000254485 SRGAP3-AS4 SRGAP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SRGAP3-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SRGAP3-AS4 Gene

Genomic Locations for SRGAP3-AS4 Gene
chr3:9,249,724-9,257,604
(GRCh38/hg38)
Size:
7,881 bases
Orientation:
Plus strand
chr3:9,298,443-9,299,191
(GRCh37/hg19)

Genomic View for SRGAP3-AS4 Gene

Genes around SRGAP3-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRGAP3-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRGAP3-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRGAP3-AS4 Gene

Proteins for SRGAP3-AS4 Gene

Post-translational modifications for SRGAP3-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRGAP3-AS4 Gene

Domains & Families for SRGAP3-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRGAP3-AS4 Gene

Function for SRGAP3-AS4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRGAP3-AS4 Gene

Localization for SRGAP3-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRGAP3-AS4 Gene

Pathways & Interactions for SRGAP3-AS4 Gene

SuperPathways for SRGAP3-AS4 Gene

No Data Available

Interacting Proteins for SRGAP3-AS4 Gene

Gene Ontology (GO) - Biological Process for SRGAP3-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRGAP3-AS4 Gene

Drugs & Compounds for SRGAP3-AS4 Gene

No Compound Related Data Available

Transcripts for SRGAP3-AS4 Gene

mRNA/cDNA for SRGAP3-AS4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SRGAP3-AS4 Gene

No ASD Table

Relevant External Links for SRGAP3-AS4 Gene

GeneLoc Exon Structure for
SRGAP3-AS4
ECgene alternative splicing isoforms for
SRGAP3-AS4

Expression for SRGAP3-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRGAP3-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for SRGAP3-AS4 Gene

This gene is overexpressed in Heart - Left Ventricle (x14.5).

NURSA nuclear receptor signaling pathways regulating expression of SRGAP3-AS4 Gene:

SRGAP3-AS4
genes like me logo Genes that share expression patterns with SRGAP3-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRGAP3-AS4 Gene

Orthologs for SRGAP3-AS4 Gene

Evolution for SRGAP3-AS4 Gene

ENSEMBL:
Gene Tree for SRGAP3-AS4 (if available)
TreeFam:
Gene Tree for SRGAP3-AS4 (if available)

No data available for Orthologs for SRGAP3-AS4 Gene

Paralogs for SRGAP3-AS4 Gene

No data available for Paralogs for SRGAP3-AS4 Gene

Variants for SRGAP3-AS4 Gene

Sequence variations from dbSNP and Humsavar for SRGAP3-AS4 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000277771 -- 9,257,511(+) T/C non_coding_transcript_variant
rs1000360259 -- 9,257,147(+) T/A intron_variant
rs1000876691 -- 9,252,857(+) GGTAGGT/GGT intron_variant
rs1001161261 -- 9,252,217(+) A/C intron_variant
rs1001359850 -- 9,255,749(+) C/T intron_variant

Additional Variant Information for SRGAP3-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRGAP3-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRGAP3-AS4 Gene

Disorders for SRGAP3-AS4 Gene

Additional Disease Information for SRGAP3-AS4

No disorders were found for SRGAP3-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRGAP3-AS4 Gene

Publications for SRGAP3-AS4 Gene

No publications were found for SRGAP3-AS4 Gene.

Products for SRGAP3-AS4 Gene

Sources for SRGAP3-AS4 Gene

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