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Aliases for SRGAP3-AS4 Gene

Subcategory (RNA class) for SRGAP3-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRGAP3-AS4 Gene

  • SRGAP3 Antisense RNA 4 2 3 5
  • SRGAP3 Antisense RNA 4 (Non-Protein Coding) 2

External Ids for SRGAP3-AS4 Gene

Previous GeneCards Identifiers for SRGAP3-AS4 Gene

  • GC00U933278

Summaries for SRGAP3-AS4 Gene

GeneCards Summary for SRGAP3-AS4 Gene

SRGAP3-AS4 (SRGAP3 Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRGAP3-AS4 Gene

Genomics for SRGAP3-AS4 Gene

Regulatory Elements for SRGAP3-AS4 Gene

Enhancers for SRGAP3-AS4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G009247 0.9 ENCODE 0.7 -0.6 -586 3.9 ELF3 HDGF PKNOX1 ATF1 ZSCAN4 ZNF133 KLF17 BMI1 ZNF2 RAD21 EMC3-AS1 SRGAP3-AS4 GC03P009233
GH03G009301 1.1 Ensembl ENCODE 0.2 +52.4 52402 1.6 ELF3 ATF1 RB1 SIN3A BMI1 ZNF2 RAD21 ZNF143 FOS KLF7 RAD18 ENSG00000199815 ENSG00000254485 GC03M009298 SRGAP3-AS4
GH03G009279 0.7 ENCODE 0.3 +30.7 30674 1.2 CTCF PKNOX1 ESRRA RFX1 NR2F1 BMI1 ZIC2 EP300 OSR2 ZFHX2 SRGAP3 SRGAP3-AS1 ENSG00000254485 ENSG00000231401 GC03M009298 SRGAP3-AS4
GH03G009251 0.2 ENCODE 0.7 +1.5 1508 0.2 SRGAP3-AS4 GC03M009298
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRGAP3-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for SRGAP3-AS4 Gene

Chromosome:
3
Start:
9,249,724 bp from pter
End:
9,257,604 bp from pter
Size:
7,881 bases
Orientation:
Plus strand

Genomic View for SRGAP3-AS4 Gene

Genes around SRGAP3-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRGAP3-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRGAP3-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRGAP3-AS4 Gene

Proteins for SRGAP3-AS4 Gene

Post-translational modifications for SRGAP3-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRGAP3-AS4 Gene

Domains & Families for SRGAP3-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRGAP3-AS4 Gene

Function for SRGAP3-AS4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRGAP3-AS4 Gene

Localization for SRGAP3-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SRGAP3-AS4 Gene

Pathways & Interactions for SRGAP3-AS4 Gene

SuperPathways for SRGAP3-AS4 Gene

No Data Available

Interacting Proteins for SRGAP3-AS4 Gene

Gene Ontology (GO) - Biological Process for SRGAP3-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRGAP3-AS4 Gene

Drugs & Compounds for SRGAP3-AS4 Gene

No Compound Related Data Available

Transcripts for SRGAP3-AS4 Gene

mRNA/cDNA for SRGAP3-AS4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SRGAP3-AS4 Gene

No ASD Table

Relevant External Links for SRGAP3-AS4 Gene

GeneLoc Exon Structure for
SRGAP3-AS4
ECgene alternative splicing isoforms for
SRGAP3-AS4

Expression for SRGAP3-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRGAP3-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for SRGAP3-AS4 Gene

This gene is overexpressed in Heart - Left Ventricle (x14.5).

NURSA nuclear receptor signaling pathways regulating expression of SRGAP3-AS4 Gene:

SRGAP3-AS4
genes like me logo Genes that share expression patterns with SRGAP3-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRGAP3-AS4 Gene

Orthologs for SRGAP3-AS4 Gene

Evolution for SRGAP3-AS4 Gene

ENSEMBL:
Gene Tree for SRGAP3-AS4 (if available)
TreeFam:
Gene Tree for SRGAP3-AS4 (if available)

No data available for Orthologs for SRGAP3-AS4 Gene

Paralogs for SRGAP3-AS4 Gene

No data available for Paralogs for SRGAP3-AS4 Gene

Variants for SRGAP3-AS4 Gene

Sequence variations from dbSNP and Humsavar for SRGAP3-AS4 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000277771 -- 9,257,511(+) AAGTA(C/T)ATGGT intron-variant, nc-transcript-variant
rs1000360259 -- 9,257,147(+) TATAT(A/T)TTTTT intron-variant
rs1000876691 -- 9,252,857(+) AATGT(-/GGTA)GGTGT intron-variant
rs1001161261 -- 9,252,217(+) ATTGG(A/C)AGCTT intron-variant
rs1001359850 -- 9,255,749(+) GTCAA(C/T)GTGTG intron-variant

Relevant External Links for SRGAP3-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRGAP3-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRGAP3-AS4 Gene

Disorders for SRGAP3-AS4 Gene

No disorders were found for SRGAP3-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SRGAP3-AS4 Gene

Publications for SRGAP3-AS4 Gene

No publications were found for SRGAP3-AS4 Gene.

Products for SRGAP3-AS4 Gene

Sources for SRGAP3-AS4 Gene

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