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Aliases for SRGAP3-AS3 Gene

Subcategory (RNA class) for SRGAP3-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRGAP3-AS3 Gene

  • SRGAP3 Antisense RNA 3 2 3 5
  • SRGAP3 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for SRGAP3-AS3 Gene

Previous GeneCards Identifiers for SRGAP3-AS3 Gene

  • GC03P009260

Summaries for SRGAP3-AS3 Gene

GeneCards Summary for SRGAP3-AS3 Gene

SRGAP3-AS3 (SRGAP3 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRGAP3-AS3 Gene

Genomics for SRGAP3-AS3 Gene

Regulatory Elements for SRGAP3-AS3 Gene

Enhancers for SRGAP3-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F009394 1.2 ENCODE 33.9 +182.1 182097 9.8 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SRGAP3-AS3 SRGAP3-AS1 THUMPD3-AS1 SRGAP3 RNU6-882P RAD18 ENSG00000269894 FANCD2 TATDN2 FANCD2OS
GH03F009984 1.2 Ensembl 33.9 +768.0 768006 0.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ENSG00000230599 RNU6-882P FANCD2 RNU6-670P CYCSP10 PRRT3 RPUSD3
GH03F009726 1.2 Ensembl ENCODE 33.9 +510.5 510506 1.6 HDGF ATF1 PKNOX1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF207 YY2 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ATP2B2-IT2 FANCD2OS IL17RC BRPF1 GC03M009670
GH03F009730 1.2 ENCODE 33.9 +515.1 515139 3.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SRGAP3-AS3 SRGAP3-AS1 RAD18 EMC3-AS1 ENSG00000269982 CYCSP10 ATP2B2-IT1 GHRLOS FANCD2 TATDN2
GH03F010024 1.2 ENCODE 33.9 +809.4 809358 2.7 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SRGAP3-AS3 FANCD2OS BRK1 ATP2B2-IT1 ENSG00000230599 RNU6-882P CRELD1 FANCD2 CYCSP10 ATP2B2-IT2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRGAP3-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SRGAP3-AS3 Gene

Chromosome:
3
Start:
9,216,895 bp from pter
End:
9,219,508 bp from pter
Size:
2,614 bases
Orientation:
Plus strand

Genomic View for SRGAP3-AS3 Gene

Genes around SRGAP3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRGAP3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRGAP3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRGAP3-AS3 Gene

Proteins for SRGAP3-AS3 Gene

Post-translational modifications for SRGAP3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRGAP3-AS3 Gene

Domains & Families for SRGAP3-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRGAP3-AS3 Gene

Function for SRGAP3-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRGAP3-AS3 Gene

Localization for SRGAP3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SRGAP3-AS3 Gene

Pathways & Interactions for SRGAP3-AS3 Gene

SuperPathways for SRGAP3-AS3 Gene

No Data Available

Interacting Proteins for SRGAP3-AS3 Gene

Gene Ontology (GO) - Biological Process for SRGAP3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRGAP3-AS3 Gene

Transcripts for SRGAP3-AS3 Gene

mRNA/cDNA for SRGAP3-AS3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SRGAP3-AS3 Gene

SRGAP3 antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SRGAP3-AS3 Gene

No ASD Table

Relevant External Links for SRGAP3-AS3 Gene

GeneLoc Exon Structure for
SRGAP3-AS3
ECgene alternative splicing isoforms for
SRGAP3-AS3

Expression for SRGAP3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRGAP3-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for SRGAP3-AS3 Gene

This gene is overexpressed in Testis (x46.7).

SOURCE GeneReport for Unigene cluster for SRGAP3-AS3 Gene:

Hs.694646
genes like me logo Genes that share expression patterns with SRGAP3-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SRGAP3-AS3 Gene

Orthologs for SRGAP3-AS3 Gene

Evolution for SRGAP3-AS3 Gene

ENSEMBL:
Gene Tree for SRGAP3-AS3 (if available)
TreeFam:
Gene Tree for SRGAP3-AS3 (if available)

No data available for Orthologs for SRGAP3-AS3 Gene

Paralogs for SRGAP3-AS3 Gene

No data available for Paralogs for SRGAP3-AS3 Gene

Variants for SRGAP3-AS3 Gene

Sequence variations from dbSNP and Humsavar for SRGAP3-AS3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1154397 -- 9,215,997(-) TGTCT(A/G)TCTGT intron-variant, upstream-variant-2KB
rs1154398 -- 9,216,534(-) TAGGG(C/T)ATCTG intron-variant, upstream-variant-2KB
rs115883551 -- 9,219,351(+) CTCTG(C/T)ATCAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115995113 -- 9,219,260(+) GACTT(A/T)CCAAC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs116160927 -- 9,216,782(+) AGGAG(C/T)GGATG intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SRGAP3-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv3690 CNV insertion 18451855

Relevant External Links for SRGAP3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRGAP3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SRGAP3-AS3 Gene

Disorders for SRGAP3-AS3 Gene

Relevant External Links for SRGAP3-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRGAP3-AS3

No disorders were found for SRGAP3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRGAP3-AS3 Gene

Publications for SRGAP3-AS3 Gene

No publications were found for SRGAP3-AS3 Gene.

Products for SRGAP3-AS3 Gene

Sources for SRGAP3-AS3 Gene

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