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Aliases for SRGAP3-AS2 Gene

Subcategory (RNA class) for SRGAP3-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRGAP3-AS2 Gene

  • SRGAP3 Antisense RNA 2 2 3 5
  • SRGAP3 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for SRGAP3-AS2 Gene

Previous GeneCards Identifiers for SRGAP3-AS2 Gene

  • GC03P009236

Summaries for SRGAP3-AS2 Gene

GeneCards Summary for SRGAP3-AS2 Gene

SRGAP3-AS2 (SRGAP3 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRGAP3-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRGAP3-AS2 Gene

Genomics for SRGAP3-AS2 Gene

Regulatory Elements for SRGAP3-AS2 Gene

Enhancers for SRGAP3-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H009172 1.2 Ensembl ENCODE dbSUPER 0.4 -19.4 -19350 0 CTCF TFAP4 FOXA2 NFIB SAP130 MAX RAD21 ZFHX2 GATA3 EGR2 SRGAP3 SRGAP3-AS2 GC03P009098
GH03H009179 1.1 Ensembl ENCODE dbSUPER 0.4 -12.1 -12093 1 IKZF1 MAX RUNX3 IKZF2 CREM GABPA SRGAP3-AS2 GC03P009098
GH03H009203 1.1 ENCODE dbSUPER 0.4 +12.0 12006 1 ELF3 FOXA2 ARID4B RAD21 RARA RCOR1 MIXL1 HMG20B SP5 MIER2 SRGAP3-AS3 SRGAP3-AS2
GH03H009174 0.9 ENCODE dbSUPER 0.4 -17.1 -17097 1 STAT1 NFIB ELF1 NR3C1 ZNF217 GATA3 CTBP1 RCOR1 SRGAP3-AS2 GC03P009098
GH03H009166 1.1 ENCODE dbSUPER 0.3 -23.2 -23242 4 HDGF MAX BATF RELA RFX5 ZFHX2 GATA3 POLR2A EED ATF7 SRGAP3 LMCD1-AS1 SRGAP3-AS2 GC03P009098
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRGAP3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SRGAP3-AS2 Gene

Chromosome:
3
Start:
9,192,493 bp from pter
End:
9,194,453 bp from pter
Size:
1,961 bases
Orientation:
Plus strand

Genomic View for SRGAP3-AS2 Gene

Genes around SRGAP3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRGAP3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRGAP3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRGAP3-AS2 Gene

Proteins for SRGAP3-AS2 Gene

Post-translational modifications for SRGAP3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRGAP3-AS2 Gene

Domains & Families for SRGAP3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRGAP3-AS2 Gene

Function for SRGAP3-AS2 Gene

Phenotypes From GWAS Catalog for SRGAP3-AS2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SRGAP3-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRGAP3-AS2 Gene

Localization for SRGAP3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRGAP3-AS2 Gene

Pathways & Interactions for SRGAP3-AS2 Gene

SuperPathways for SRGAP3-AS2 Gene

No Data Available

Interacting Proteins for SRGAP3-AS2 Gene

Gene Ontology (GO) - Biological Process for SRGAP3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRGAP3-AS2 Gene

Drugs & Compounds for SRGAP3-AS2 Gene

No Compound Related Data Available

Transcripts for SRGAP3-AS2 Gene

mRNA/cDNA for SRGAP3-AS2 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SRGAP3-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SRGAP3-AS2 Gene

No ASD Table

Relevant External Links for SRGAP3-AS2 Gene

GeneLoc Exon Structure for
SRGAP3-AS2
ECgene alternative splicing isoforms for
SRGAP3-AS2

Expression for SRGAP3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRGAP3-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for SRGAP3-AS2 Gene

This gene is overexpressed in Cervix - Endocervix (x16.1), Fallopian Tube (x15.8), and Lung (x13.0).
genes like me logo Genes that share expression patterns with SRGAP3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRGAP3-AS2 Gene

Orthologs for SRGAP3-AS2 Gene

Evolution for SRGAP3-AS2 Gene

ENSEMBL:
Gene Tree for SRGAP3-AS2 (if available)
TreeFam:
Gene Tree for SRGAP3-AS2 (if available)

No data available for Orthologs for SRGAP3-AS2 Gene

Paralogs for SRGAP3-AS2 Gene

No data available for Paralogs for SRGAP3-AS2 Gene

Variants for SRGAP3-AS2 Gene

Sequence variations from dbSNP and Humsavar for SRGAP3-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000544437 -- 9,194,237(+) AAATA(G/T)TTGAA intron-variant, nc-transcript-variant
rs1000687715 -- 9,194,519(+) TAATA(C/G/T)AGTGA intron-variant
rs1000741084 -- 9,194,216(+) TTTCC(A/T)ATAGG intron-variant, nc-transcript-variant
rs1001915366 -- 9,194,571(+) AGCTG(A/G)GAGGA intron-variant
rs1002481416 -- 9,192,939(+) TGAGG(A/G)AGGAG intron-variant, nc-transcript-variant

Relevant External Links for SRGAP3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRGAP3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRGAP3-AS2 Gene

Disorders for SRGAP3-AS2 Gene

Relevant External Links for SRGAP3-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRGAP3-AS2

No disorders were found for SRGAP3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRGAP3-AS2 Gene

Publications for SRGAP3-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for SRGAP3-AS2 Gene

Sources for SRGAP3-AS2 Gene

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