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Aliases for SRGAP3-AS2 Gene

Subcategory (RNA class) for SRGAP3-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRGAP3-AS2 Gene

  • SRGAP3 Antisense RNA 2 2 3 5
  • SRGAP3 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for SRGAP3-AS2 Gene

Previous GeneCards Identifiers for SRGAP3-AS2 Gene

  • GC03P009236

Summaries for SRGAP3-AS2 Gene

GeneCards Summary for SRGAP3-AS2 Gene

SRGAP3-AS2 (SRGAP3 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRGAP3-AS2 Gene

Genomics for SRGAP3-AS2 Gene

Regulatory Elements for SRGAP3-AS2 Gene

Enhancers for SRGAP3-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F009203 1.1 Ensembl ENCODE 0.4 +12.0 12006 1.3 ELF3 ARID4B ZNF48 RAD21 RARA MIXL1 HMG20B SP5 ZHX2 MIER2 SRGAP3-AS2 SRGAP3-AS3
GH03F009166 1.1 Ensembl ENCODE 0.3 -23.2 -23242 4.6 HDGF ZNF146 PKNOX1 USF1 FEZF1 ZIC2 RFX5 RELA ZFHX2 GATA3 SRGAP3 LMCD1-AS1 SRGAP3-AS2 GC03P009098
GH03F009179 0.8 Ensembl ENCODE 0.4 -12.0 -11993 1.8 IKZF1 MAX REST CREM ZBTB40 SRGAP3-AS2 GC03P009098
GH03F009172 1 Ensembl ENCODE 0.3 -19.1 -19093 1.6 CTCF SAP130 INSM2 MAX RAD21 ZFHX2 ZNF366 ZBTB20 EGR2 SOX5 SRGAP3 SRGAP3-AS2 GC03P009098
GH03F009174 0.8 Ensembl ENCODE 0.3 -17.1 -17097 2.0 ZNF217 STAT1 CTBP1 RCOR1 NR3C1 SRGAP3-AS2 GC03P009098
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRGAP3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SRGAP3-AS2 Gene

Chromosome:
3
Start:
9,192,493 bp from pter
End:
9,194,453 bp from pter
Size:
1,961 bases
Orientation:
Plus strand

Genomic View for SRGAP3-AS2 Gene

Genes around SRGAP3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRGAP3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRGAP3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRGAP3-AS2 Gene

Proteins for SRGAP3-AS2 Gene

Post-translational modifications for SRGAP3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRGAP3-AS2 Gene

Domains & Families for SRGAP3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRGAP3-AS2 Gene

Function for SRGAP3-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRGAP3-AS2 Gene

Localization for SRGAP3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SRGAP3-AS2 Gene

Pathways & Interactions for SRGAP3-AS2 Gene

SuperPathways for SRGAP3-AS2 Gene

No Data Available

Interacting Proteins for SRGAP3-AS2 Gene

Gene Ontology (GO) - Biological Process for SRGAP3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRGAP3-AS2 Gene

Transcripts for SRGAP3-AS2 Gene

mRNA/cDNA for SRGAP3-AS2 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SRGAP3-AS2 Gene

No ASD Table

Relevant External Links for SRGAP3-AS2 Gene

GeneLoc Exon Structure for
SRGAP3-AS2
ECgene alternative splicing isoforms for
SRGAP3-AS2

Expression for SRGAP3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRGAP3-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for SRGAP3-AS2 Gene

This gene is overexpressed in Cervix - Endocervix (x16.1), Fallopian Tube (x15.8), and Lung (x13.0).
genes like me logo Genes that share expression patterns with SRGAP3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SRGAP3-AS2 Gene

Orthologs for SRGAP3-AS2 Gene

Evolution for SRGAP3-AS2 Gene

ENSEMBL:
Gene Tree for SRGAP3-AS2 (if available)
TreeFam:
Gene Tree for SRGAP3-AS2 (if available)

No data available for Orthologs for SRGAP3-AS2 Gene

Paralogs for SRGAP3-AS2 Gene

No data available for Paralogs for SRGAP3-AS2 Gene

Variants for SRGAP3-AS2 Gene

Sequence variations from dbSNP and Humsavar for SRGAP3-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1008414 -- 9,193,898(+) GCAGC(C/T)GCCCT intron-variant, nc-transcript-variant
rs111640997 -- 9,193,263(+) CACTG(-/T)GTTCA intron-variant
rs111739101 -- 9,192,454(+) GACTC(C/T)CTTCT intron-variant, upstream-variant-2KB
rs112026196 -- 9,192,756(+) CACAG(A/G)GAGTC intron-variant, nc-transcript-variant
rs112472427 -- 9,193,813(+) GTGAT(A/C)CAACC intron-variant, nc-transcript-variant

Relevant External Links for SRGAP3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRGAP3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRGAP3-AS2 Gene

Disorders for SRGAP3-AS2 Gene

Relevant External Links for SRGAP3-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRGAP3-AS2

No disorders were found for SRGAP3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRGAP3-AS2 Gene

Publications for SRGAP3-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SRGAP3-AS2 Gene

Sources for SRGAP3-AS2 Gene

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