Aliases for SRFBP1 Gene
Aliases for SRFBP1 Gene
External Ids for SRFBP1 Gene
- HGNC: 26333
- Entrez Gene: 153443
- Ensembl: ENSG00000151304
- OMIM: 610479
- UniProtKB: Q8NEF9
Previous GeneCards Identifiers for SRFBP1 Gene
- GC05P121327
- GC05P116489
Summaries for SRFBP1 Gene
GeneCards Summary for SRFBP1 Gene
SRFBP1 (Serum Response Factor Binding Protein 1) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding.
UniProtKB/Swiss-Prot for SRFBP1 Gene
-
May be involved in regulating transcriptional activation of cardiac genes during the aging process. May play a role in biosynthesis and/or processing of SLC2A4 in adipose cells (By similarity).
No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRFBP1 Gene
Genomics for SRFBP1 Gene
Regulatory Elements for SRFBP1 Gene
Enhancers for SRFBP1 Gene
| GeneHancer Identifier | Score | Enhancer Sources | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Other Gene Targets for Enhancer |
|---|
Enhancers around SRFBP1 on UCSC Golden Path with GeneCards custom track
Promoters for SRFBP1 Gene
| Ensembl Regulatory Elements (ENSRs) | TSS Distance (bp) | Size (bp) | Binding Sites for Transcription Factors within promoters |
|---|
ENSRs around SRFBP1 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the SRFBP1 gene promoter:
Regulatory Element Products
Genomic Location for SRFBP1 Gene
- Chromosome:
- 5
- Start:
- 121,961,961 bp from pter
- End:
- 122,075,570 bp from pter
- Size:
- 113,610 bases
- Orientation:
- Plus strand
Genomic View for SRFBP1 Gene
Genes around SRFBP1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q23.1 by Ensembl
- 5q23.1 by Entrez Gene
- 5q23.1 by HGNC
SRFBP1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SRFBP1 Gene
Proteins for SRFBP1 Gene
-
Protein details for SRFBP1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8NEF9-SRFB1_HUMAN
- Recommended name:
- Serum response factor-binding protein 1
- Protein Accession:
- Q8NEF9
- Q5QFI2
- Q96AH4
- Q96DK2
Protein attributes for SRFBP1 Gene
- Size:
- 429 amino acids
- Molecular mass:
- 48634 Da
- Quaternary structure:
-
- Interacts with SRF. Forms complexes with SRF and SRF cofactors ARID2, MYOCD and NKX2-5. Interacts with the N-terminus of SLC2A4 (By similarity).
- SequenceCaution:
-
- Sequence=BAB71631.1; Type=Frameshift; Positions=425; Evidence={ECO:0000305};
Protein Expression for SRFBP1 Gene
Post-translational modifications for SRFBP1 Gene
Other Protein References for SRFBP1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for SRFBP1
- Abcam antibodies for SRFBP1
- Invitrogen Antibodies for SRFBP1
- antibodies-online Antibodies for SRFBP1: See all 28
- Search GeneTex for Antibodies for SRFBP1
Protein Products
-
OriGene Purified Proteins for SRFBP1
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- Sino Biological Cell Lysates for SRFBP1
- Sino Biological Recombinant Proteins for SRFBP1
- antibodies-online Proteins for SRFBP1: See all 6
- Search antibodies-online for peptides
- Search GeneTex for Proteins for SRFBP1
- Abcam proteins for SRFBP1
Assay Products
- antibodies-online Kits for SRFBP1: See all 4
No data available for DME Specific Peptides for SRFBP1 Gene
Domains & Families for SRFBP1 Gene
Protein Domains for SRFBP1 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for SRFBP1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families and UniProtKB/Swiss-Prot for SRFBP1 Gene
Function for SRFBP1 Gene
Molecular function for SRFBP1 Gene
- UniProtKB/Swiss-Prot Function:
- May be involved in regulating transcriptional activation of cardiac genes during the aging process. May play a role in biosynthesis and/or processing of SLC2A4 in adipose cells (By similarity).
Phenotypes for SRFBP1 Gene
- GenomeRNAi human phenotypes for SRFBP1:
-
- Increased vaccinia virus (VACV) infection
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection
- Decreased NF-kappaB reporter expression
- Weakly decreased NFAT1-GFP nuclear translocation
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection after viral supernatant infection
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection after direct virus infection
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for SRFBP1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for SRFBP1 gene
- Search ViGene Biosciences for SRFBP1
CRISPR Products
-
OriGene CRISPR knockouts for SRFBP1
-
Santa Cruz Biotechnology (SCBT) CRISPR for SRFBP1
- GenScript: Design CRISPR guide RNA sequences for SRFBP1
miRNA for SRFBP1 Gene
- miRTarBase miRNAs that target SRFBP1
-
- hsa-mir-2054 (MIRT560669)
- hsa-mir-8068 (MIRT560670)
- hsa-mir-92b-3p (MIRT560671)
- hsa-mir-92a-3p (MIRT560672)
- hsa-mir-367-3p (MIRT560673)
- hsa-mir-363-3p (MIRT560674)
- hsa-mir-32-5p (MIRT560675)
- hsa-mir-25-3p (MIRT560676)
- hsa-mir-302f (MIRT560677)
- hsa-mir-8066 (MIRT560678)
- hsa-mir-5692a (MIRT560679)
- hsa-mir-4668-5p (MIRT619737)
- hsa-mir-3613-3p (MIRT619738)
- hsa-mir-4735-5p (MIRT619739)
- hsa-mir-6877-3p (MIRT619740)
- hsa-mir-6819-3p (MIRT619741)
- hsa-mir-7109-3p (MIRT619742)
- hsa-mir-129-5p (MIRT626181)
- hsa-mir-8055 (MIRT626182)
- hsa-mir-6864-3p (MIRT626183)
- hsa-mir-3672 (MIRT626184)
- hsa-mir-4524a-3p (MIRT626185)
- hsa-mir-1-5p (MIRT626186)
- hsa-mir-3664-5p (MIRT626187)
- hsa-mir-514a-5p (MIRT626188)
- hsa-mir-4714-5p (MIRT626189)
miRNA Products
- Search ViGene Biosciences for SRFBP1
Clone Products
- OriGene clones in human for SRFBP1
- OriGene ORF clones in human,mouse,rat for SRFBP1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for SRFBP1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for SRFBP1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for SRFBP1 gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SRFBP1 Gene
Localization for SRFBP1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for SRFBP1 Gene
- Cytoplasm, perinuclear region.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 2 |
| plasma membrane | 2 |
No data available for Gene Ontology (GO) - Cellular Components for SRFBP1 Gene
Pathways & Interactions for SRFBP1 Gene
More details on SuperPathways for SRFBP1
No Data Available
Interacting Proteins for SRFBP1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006351 | transcription, DNA-templated | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for SRFBP1 Gene
Transcripts for SRFBP1 Gene
mRNA/cDNA for SRFBP1 Gene
- (1) REFSEQ mRNAs :
- (4) Additional mRNA sequences :
- (52) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for SRFBP1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for SRFBP1
-
Santa Cruz Biotechnology (SCBT) CRISPR for SRFBP1
- GenScript: Design CRISPR guide RNA sequences for SRFBP1
miRNA Products
- Search ViGene Biosciences for SRFBP1
Clone Products
- OriGene clones in human for SRFBP1
- OriGene ORF clones in human,mouse,rat for SRFBP1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for SRFBP1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
Expression for SRFBP1 Gene
This gene is overexpressed in Retina (24.3), Lung (20.6), Testis (9.2), and Pancreatic juice (6.5).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SRFBP1 Gene
SOURCE GeneReport for Unigene cluster for SRFBP1 Gene Hs.107622
mRNA Expression by UniProt/SwissProt for SRFBP1 Gene
Q8NEF9-SRFB1_HUMAN
Tissue specificity:
Abundantly expressed in heart and skeletal muscle, and at much lower levels in brain and lung.
Primer Products
-
OriGene qPCR primer pairs for SRFBP1
-
OriGene qPCR primer pairs and template standards for SRFBP1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for SRFBP1 Gene
Orthologs for SRFBP1 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | SRFBP1 35 |
|
||
| SRFBP1 36 |
|
OneToOne | |||
| dog (Canis familiaris) |
Mammalia | SRFBP1 35 |
|
||
| SRFBP1 36 |
|
OneToOne | |||
| mouse (Mus musculus) |
Mammalia | Srfbp1 35 |
|
||
| Srfbp1 16 |
|
||||
| Srfbp1 36 |
|
OneToOne | |||
| chimpanzee (Pan troglodytes) |
Mammalia | SRFBP1 35 |
|
||
| SRFBP1 36 |
|
OneToOne | |||
| rat (Rattus norvegicus) |
Mammalia | Srfbp1 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 36 |
|
OneToMany | |
| -- 36 |
|
OneToMany | |||
| platypus (Ornithorhynchus anatinus) |
Mammalia | SRFBP1 36 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | SRFBP1 35 |
|
||
| SRFBP1 36 |
|
OneToOne | |||
| lizard (Anolis carolinensis) |
Reptilia | SRFBP1 36 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | srfbp1 35 |
|
||
| Str.7448 35 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | flj25286-prov 35 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | srfbp1 35 |
|
||
| wufc54c06 35 |
|
||||
| srfbp1 36 |
|
OneToOne | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.6565 36 |
|
OneToOne |
- Species with no ortholog for SRFBP1:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for SRFBP1 Gene
Pseudogenes.org Pseudogenes for SRFBP1 Gene
No data available for Paralogs for SRFBP1 Gene
Variants for SRFBP1 Gene
| SNP ID | Clin | Chr 05 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs840468 | -- | 122,015,931(-) | AAGTA(C/T)ATGAG | intron-variant | |
| rs2913408 | -- | 122,005,358(-) | ggata(A/T)aacac | intron-variant | |
| rs2913409 | -- | 121,990,333(-) | aagta(C/T)ttgct | intron-variant | |
| rs2914605 | -- | 121,970,332(-) | GTGGG(C/T)AGAGT | intron-variant | |
| rs2914610 | -- | 121,978,473(-) | TACTG(C/T)GTATA | intron-variant |
Residual Variation Intolerance Score:
90% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
4.22;
62.12% of all genes are more intolerant (likely to be disease-causing)
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SRFBP1 Gene
Disorders for SRFBP1 Gene
Relevant External Links for SRFBP1
No disorders were found for SRFBP1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRFBP1 Gene
Publications for SRFBP1 Gene
- Identification of a novel serum response factor cofactor in cardiac gene regulation. (PMID: 15492011) Zhang X. … Wei J.Y. (J. Biol. Chem. 2004) 2 3 4 23 67
- The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
- A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
- Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
- The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. (PMID: 22681889) Baltz A.G. … Landthaler M. (Mol. Cell 2012) 3
Products for SRFBP1 Gene
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- OriGene qPCR primer pairs for SRFBP1
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- Abcam proteins for SRFBP1
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- antibodies-online Antibodies for SRFBP1: See all 28
- antibodies-online Kits for SRFBP1: See all 4
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- Search ViGene Biosciences for SRFBP1
Sources for SRFBP1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) I2D
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) RNAdb
- (30) ASD
- (31) ECgene
- (32) GeneAnnot
- (33) SAGE
- (34) SOURCE
- (35) HomoloGene
- (36) PanEnsembl
- (37) euGenes
- (38) SGD
- (39) FlyBase
- (40) WormBase
- (41) Pseudogene
- (42) DGV
- (43) dbSNP
- (44) HapMap
- (45) GenAtlas
- (46) GeneTests
- (47) HGMD
- (48) GAD
- (49) LSDB
- (50) BGMUT
- (51) HuGE
- (52) eBioscience
- (53) Atlas
- (54) Cell Signaling Technology
- (55) GenBank
- (56) H-invDB
- (57) HORDE
- (58) HUGE
- (59) IMGT
- (60) Leiden
- (61) MILLIPORE
- (62) miRBase
- (63) DME
- (64) Nature
- (65) NCBI
- (66) OriGene
- (67) PubMed
- (68) R&D Systems
- (69) Salk
- (70) TGDB
- (71) Tufts
- (72) YEDA
- (73) CROW21
- (74) Tocris
- (75) Abcam
- (76) Novus
- (77) ProSpec
- (78) Sino Biological
- (79) GenScript
- (80) Qiagen
- (81) Cloud-Clone Corp.
- (82) Enzo Life Sciences
- (83) OCA
- (84) Proteopedia
- (85) MOPED
- (86) SPIRE
- (87) neXtProt
- (88) Reactome
- (89) GeneGo (Thomson Reuters)
- (90) fRNAdb
- (91) DISEASES
- (92) SIMAP
- (93) GenomeRNAi
- (94) LifeMap
- (95) miRTarBase
- (96) MalaCards
- (97) Invitrogen
- (98) BitterDB
- (99) Vector BioLabs
- (100) ESI-BIO
- (101) RefSeq
- (102) BioSystems
- (103) MaxQB
- (104) IUPHAR
- (105) BioGPS
- (106) Illumina
- (107) COMPARTMENTS
- (108) HOMER
- (109) PaxDb
- (110) ApexBio
- (111) Addgene
- (112) Advanced Cell Diagnostics
- (113) antibodies-online
- (114) CYP
- (115) NONCODE
- (116) SwitchGear Genomics
- (117) TreeFam
- (118) PathCards
- (119) GeneReviews
- (120) GeneTex
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- (123) ProteomicsDB
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- (136) Genetics Home Reference
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- (138) MedlinePlus
- (139) CDC
- (140) NINDS
- (141) NCBI Bookshelf
- (142) ClinVar
- (143) Gene Damage Index
- (144) ViGene Biosciences
- (145) HPO
- (146) UDN
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- (148) FANTOM5
- (149) ENCODE
- (150) ProSci
- (151) Horizon