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Aliases for SRD5A3-AS1 Gene

Subcategory (RNA class) for SRD5A3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRD5A3-AS1 Gene

  • SRD5A3 Antisense RNA 1 2 3 5
  • SRD5A3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SRD5A3-AS1 Gene

Previous GeneCards Identifiers for SRD5A3-AS1 Gene

  • GC04M056232

Summaries for SRD5A3-AS1 Gene

GeneCards Summary for SRD5A3-AS1 Gene

SRD5A3-AS1 (SRD5A3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRD5A3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRD5A3-AS1 Gene

Genomics for SRD5A3-AS1 Gene

Regulatory Elements for SRD5A3-AS1 Gene

Enhancers for SRD5A3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H055357 1.3 Ensembl ENCODE dbSUPER 12.9 +36.9 36859 2 HDAC1 TBL1XR1 ZNF366 SCRT2 FOS JUNB CEBPB ZEB2 PRDM6 SMARCA4 TMEM165 SRD5A3-AS1 NMU CLOCK PIR32131 LOC105377659
GH04H055436 1.1 ENCODE dbSUPER 12.2 -42.5 -42469 2 HDAC1 PKNOX1 ATF1 FOXA2 TBL1XR1 TCF12 GATA2 CREM ZBTB2 ZEB2 RN7SKP30 TMEM165 CLOCK SRD5A3-AS1 GC04M055433 PIR52615 ENSG00000238585 GC04M055502
GH04H055356 0.8 dbSUPER 12.9 +38.7 38728 1 FOXA2 JUN CEBPG FOSL1 FOS GATAD2A FOXA3 CEBPB NR3C1 FOXA1 TMEM165 SRD5A3-AS1 PIR32131 LOC105377659
GH04H055386 1.3 ENCODE dbSUPER 4.9 +8.6 8607 2 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ZNF143 ATF7 NFYC TMEM165 ENSG00000272969 NMU SRD5A3-AS1 ENSG00000273257 LOC105377659
GH04H055548 0.8 ENCODE 7.5 -154.2 -154190 2 ZNF146 INSM2 FEZF1 FOSL1 ZNF664 HIC1 ZNF121 GLI2 ZSCAN5C SCRT2 TMEM165 NMU CLOCK ENSG00000272969 SRD5A3-AS1 PDCL2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRD5A3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SRD5A3-AS1 Gene

Chromosome:
4
Start:
55,363,971 bp from pter
End:
55,395,847 bp from pter
Size:
31,877 bases
Orientation:
Minus strand

Genomic View for SRD5A3-AS1 Gene

Genes around SRD5A3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRD5A3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRD5A3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRD5A3-AS1 Gene

Proteins for SRD5A3-AS1 Gene

Post-translational modifications for SRD5A3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRD5A3-AS1 Gene

Domains & Families for SRD5A3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRD5A3-AS1 Gene

Function for SRD5A3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRD5A3-AS1 Gene

Localization for SRD5A3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRD5A3-AS1 Gene

Pathways & Interactions for SRD5A3-AS1 Gene

SuperPathways for SRD5A3-AS1 Gene

No Data Available

Interacting Proteins for SRD5A3-AS1 Gene

Gene Ontology (GO) - Biological Process for SRD5A3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRD5A3-AS1 Gene

Drugs & Compounds for SRD5A3-AS1 Gene

No Compound Related Data Available

Transcripts for SRD5A3-AS1 Gene

mRNA/cDNA for SRD5A3-AS1 Gene

(3) Additional mRNA sequences :
(27) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SRD5A3-AS1 Gene

SRD5A3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SRD5A3-AS1 Gene

No ASD Table

Relevant External Links for SRD5A3-AS1 Gene

GeneLoc Exon Structure for
SRD5A3-AS1
ECgene alternative splicing isoforms for
SRD5A3-AS1

Expression for SRD5A3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRD5A3-AS1 Gene

SOURCE GeneReport for Unigene cluster for SRD5A3-AS1 Gene:

Hs.718667
genes like me logo Genes that share expression patterns with SRD5A3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRD5A3-AS1 Gene

Orthologs for SRD5A3-AS1 Gene

Evolution for SRD5A3-AS1 Gene

ENSEMBL:
Gene Tree for SRD5A3-AS1 (if available)
TreeFam:
Gene Tree for SRD5A3-AS1 (if available)

No data available for Orthologs for SRD5A3-AS1 Gene

Paralogs for SRD5A3-AS1 Gene

No data available for Paralogs for SRD5A3-AS1 Gene

Variants for SRD5A3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SRD5A3-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs765191836 Pathogenic 55,367,628(+) CGGTG(A/G/T)TTCCA intron-variant, reference, missense, stop-gained
rs886039433 Likely pathogenic 55,369,878(+) TGGTT(G/T)GAATA intron-variant, reference, missense
rs147485112 Likely benign 55,371,797(+) TTACA(A/G)GCACA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs2538 Likely benign 55,370,161(+) TGGAG(C/T)CCAAA intron-variant, utr-variant-3-prime
rs375142797 Likely benign 55,370,410(+) AAACT(-/ACCGAAAA)AACCG intron-variant, utr-variant-3-prime

Relevant External Links for SRD5A3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRD5A3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRD5A3-AS1 Gene

Disorders for SRD5A3-AS1 Gene

Relevant External Links for SRD5A3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRD5A3-AS1

No disorders were found for SRD5A3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRD5A3-AS1 Gene

Publications for SRD5A3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SRD5A3-AS1 Gene

Sources for SRD5A3-AS1 Gene

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