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Aliases for SRCIN1 Gene

Aliases for SRCIN1 Gene

  • SRC Kinase Signaling Inhibitor 1 2 3 5
  • SNAP-25-Interacting Protein 2 3 4
  • P130Cas-Associated Protein 2 3 4
  • P140Cap 3 4
  • P140 3 4
  • SNIP 3 4
  • SNAP25-Interacting Protein 3
  • KIAA1684 4

External Ids for SRCIN1 Gene

Previous GeneCards Identifiers for SRCIN1 Gene

  • GC17M033943
  • GC17M036686
  • GC17M032482

Summaries for SRCIN1 Gene

GeneCards Summary for SRCIN1 Gene

SRCIN1 (SRC Kinase Signaling Inhibitor 1) is a Protein Coding gene. Diseases associated with SRCIN1 include Sclerosing Keratitis and Punctate Epithelial Keratoconjunctivitis. Among its related pathways are Adhesion and Neuroscience. GO annotations related to this gene include protein kinase binding and protein domain specific binding. An important paralog of this gene is KIAA1217.

UniProtKB/Swiss-Prot for SRCIN1 Gene

  • Acts as a negative regulator of SRC by activating CSK which inhibits SRC activity and downstream signaling, leading to impaired cell spreading and migration. Regulates dendritic spine morphology. Involved in calcium-dependent exocytosis. May play a role in neurotransmitter release or synapse maintenance.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRCIN1 Gene

Genomics for SRCIN1 Gene

Regulatory Elements for SRCIN1 Gene

Enhancers for SRCIN1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G038550 0.7 dbSUPER 17.7 +53.7 53720 3.4 ZNF263 PKNOX1 RFX1 NRF1 BHLHE40 ATF2 ZKSCAN1 ZFHX2 GLIS2 NFE2 SRCIN1 ARL5C LOC105371761 GC17P038534
GH17G038553 0.5 dbSUPER 18.7 +50.8 50753 2.4 CEBPA SIN3A ZNF248 SRCIN1 LOC100287808 LOC105371761 GC17P038534
GH17G038600 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.6 +4.0 3954 3.2 ARID4B ZNF2 GLIS2 KLF7 ZNF263 SP3 SP5 ZNF610 SMARCA4 ZSCAN16 ENSG00000275665 CDK12 ENSG00000275532 ENSG00000277501 ENSG00000266469 MED1 RPL19 SRCIN1 PIP4K2B SOCS7
GH17G038671 0.6 ENCODE 11.7 -66.1 -66063 0.1 PAF1 CTCF NR2F1 CHD1 ZNF623 ZNF48 ZNF335 ZNF366 NR2F6 EZH2 SRCIN1 CISD3 GC17M038673 GC17M038636
GH17G038566 1 dbSUPER 6.2 +36.3 36250 5.4 HDGF ATF1 ARNT TCF12 GLIS2 GATA2 ELK1 NCOA1 ZNF592 MBD2 SRCIN1 LOC105371761 ENSG00000274996
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SRCIN1 on UCSC Golden Path with GeneCards custom track

Promoters for SRCIN1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000093785 -70 1201 ARID4B DMAP1 ZNF2 SLC30A9 ZNF766 ZNF143 ZNF263 SP3 MXD4 REST

Genomic Location for SRCIN1 Gene

Chromosome:
17
Start:
38,530,016 bp from pter
End:
38,605,930 bp from pter
Size:
75,915 bases
Orientation:
Minus strand

Genomic View for SRCIN1 Gene

Genes around SRCIN1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRCIN1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRCIN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRCIN1 Gene

Proteins for SRCIN1 Gene

  • Protein details for SRCIN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0H9-SRCN1_HUMAN
    Recommended name:
    SRC kinase signaling inhibitor 1
    Protein Accession:
    Q9C0H9
    Secondary Accessions:
    • Q75T46
    • Q8N4W8

    Protein attributes for SRCIN1 Gene

    Size:
    1055 amino acids
    Molecular mass:
    112453 Da
    Quaternary structure:
    • Interacts with the N-terminal coiled-coil region of SNAP25 (By similarity). Interacts with BCAR1/p130Cas and SRC through its C-terminal domain. Interacts with CSK, CTTN, SORBS3/vinexin, SYP and MAPRE3/EB3.

    Alternative splice isoforms for SRCIN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SRCIN1 Gene

Post-translational modifications for SRCIN1 Gene

  • Tyrosine-phosphorylated in response to EGF and to cell adhesion to integrin ligands.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SRCIN1 Gene

Domains & Families for SRCIN1 Gene

Protein Domains for SRCIN1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SRCIN1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9C0H9

UniProtKB/Swiss-Prot:

SRCN1_HUMAN :
  • Belongs to the SRCIN1 family.
Family:
  • Belongs to the SRCIN1 family.
genes like me logo Genes that share domains with SRCIN1: view

No data available for Gene Families for SRCIN1 Gene

Function for SRCIN1 Gene

Molecular function for SRCIN1 Gene

UniProtKB/Swiss-Prot Function:
Acts as a negative regulator of SRC by activating CSK which inhibits SRC activity and downstream signaling, leading to impaired cell spreading and migration. Regulates dendritic spine morphology. Involved in calcium-dependent exocytosis. May play a role in neurotransmitter release or synapse maintenance.

Gene Ontology (GO) - Molecular Function for SRCIN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14657239
GO:0019901 protein kinase binding IDA 17525734
GO:0019904 protein domain specific binding IEA --
genes like me logo Genes that share ontologies with SRCIN1: view
genes like me logo Genes that share phenotypes with SRCIN1: view

Animal Models for SRCIN1 Gene

MGI Knock Outs for SRCIN1:

Animal Model Products

CRISPR Products

miRNA for SRCIN1 Gene

miRTarBase miRNAs that target SRCIN1

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SRCIN1 Gene

Localization for SRCIN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SRCIN1 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Cell projection, axon. Cell projection, dendrite. Cell junction, synapse. Cell junction, synapse, postsynaptic cell membrane, postsynaptic density. Note=Localized to the perinuclear region, lamellopodia, cortical actin and actin stress fibers but not to focal adhesions. Strongly expressed in axons and dendrites of the CA1 and CA3 hippocampal regions and of the dentate gyrus. Detected in both presynapses and postsynapses and in postsynaptic density fractions.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SRCIN1 gene
Compartment Confidence
cytoskeleton 5
plasma membrane 3
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for SRCIN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA,IEA 19146815
GO:0005856 cytoskeleton IEA --
GO:0005886 plasma membrane IEA --
GO:0005925 NOT focal adhesion IDA 14657239
GO:0014069 postsynaptic density ISS --
genes like me logo Genes that share ontologies with SRCIN1: view

Pathways & Interactions for SRCIN1 Gene

genes like me logo Genes that share pathways with SRCIN1: view

Pathways by source for SRCIN1 Gene

3 Cell Signaling Technology pathways for SRCIN1 Gene

SIGNOR curated interactions for SRCIN1 Gene

Other effect:

Gene Ontology (GO) - Biological Process for SRCIN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006887 exocytosis IEA --
GO:0030334 regulation of cell migration IMP,IEA 17525734
GO:0034446 substrate adhesion-dependent cell spreading IMP,IEA 17525734
GO:0050709 negative regulation of protein secretion IEA --
GO:0061001 regulation of dendritic spine morphogenesis IEA,IMP 19146815
genes like me logo Genes that share ontologies with SRCIN1: view

Drugs & Compounds for SRCIN1 Gene

(1) Drugs for SRCIN1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
genes like me logo Genes that share compounds with SRCIN1: view

Transcripts for SRCIN1 Gene

Unigene Clusters for SRCIN1 Gene

SRC kinase signaling inhibitor 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SRCIN1 Gene

No ASD Table

Relevant External Links for SRCIN1 Gene

GeneLoc Exon Structure for
SRCIN1
ECgene alternative splicing isoforms for
SRCIN1

Expression for SRCIN1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRCIN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SRCIN1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x6.2), Brain - Cerebellar Hemisphere (x5.6), Brain - Cerebellum (x5.5), and Brain - Substantia nigra (x4.4).

Protein differential expression in normal tissues from HIPED for SRCIN1 Gene

This gene is overexpressed in Frontal cortex (25.5), Brain (23.6), and Fetal Brain (8.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SRCIN1 Gene



Protein tissue co-expression partners for SRCIN1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SRCIN1 Gene:

SRCIN1

SOURCE GeneReport for Unigene cluster for SRCIN1 Gene:

Hs.448872

mRNA Expression by UniProt/SwissProt for SRCIN1 Gene:

Q9C0H9-SRCN1_HUMAN
Tissue specificity: Expressed in some primary breast carcinomas where its presence is significantly associated with increased tumor size. Not detected in normal breast tissue.

Evidence on tissue expression from TISSUES for SRCIN1 Gene

  • Nervous system(4.7)
  • Eye(4.4)
  • Liver(4.3)
  • Skin(2.8)
genes like me logo Genes that share expression patterns with SRCIN1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for SRCIN1 Gene

Orthologs for SRCIN1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SRCIN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SRCIN1 34
  • 99.01 (n)
cow
(Bos Taurus)
Mammalia SRCIN1 34
  • 92.41 (n)
dog
(Canis familiaris)
Mammalia SRCIN1 34
  • 91.82 (n)
mouse
(Mus musculus)
Mammalia Srcin1 34 16
  • 89.03 (n)
rat
(Rattus norvegicus)
Mammalia Srcin1 34
  • 88.48 (n)
chicken
(Gallus gallus)
Aves SRCIN1 34
  • 76.72 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia srcin1 34
  • 69.05 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC565863 34
  • 67.63 (n)
Species where no ortholog for SRCIN1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SRCIN1 Gene

ENSEMBL:
Gene Tree for SRCIN1 (if available)
TreeFam:
Gene Tree for SRCIN1 (if available)

Paralogs for SRCIN1 Gene

Paralogs for SRCIN1 Gene

(1) SIMAP similar genes for SRCIN1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with SRCIN1: view

Variants for SRCIN1 Gene

Sequence variations from dbSNP and Humsavar for SRCIN1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000079066 -- 38,556,794(+) AGAAC(A/C)AAGGC intron-variant
rs1000101647 -- 38,546,266(+) GCGAG(G/T)GAGGT intron-variant
rs1000123512 -- 38,589,195(+) ACAGG(C/T)GTGAG intron-variant
rs1000139137 -- 38,595,272(+) GAGTG(C/T)GGTGG intron-variant
rs1000180410 -- 38,569,758(+) GAATC(A/G)TCTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SRCIN1 Gene

Variant ID Type Subtype PubMed ID
esv1006872 CNV loss 20482838
esv2758688 CNV gain+loss 17122850
esv27695 CNV gain 19812545
esv3310352 CNV mobile element insertion 20981092
esv3442833 CNV insertion 20981092
nsv1112705 CNV deletion 24896259
nsv1144799 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv2042 CNV insertion 18451855
nsv2044 CNV insertion 18451855
nsv428341 CNV gain+loss 18775914
nsv469701 CNV loss 16826518
nsv827980 CNV gain 20364138
nsv827981 CNV gain 20364138
nsv833436 CNV loss 17160897
nsv833438 CNV loss 17160897
nsv953893 CNV deletion 24416366
nsv9549 CNV gain 18304495

Variation tolerance for SRCIN1 Gene

Residual Variation Intolerance Score: 51.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.09; 60.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SRCIN1 Gene

Human Gene Mutation Database (HGMD)
SRCIN1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRCIN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SRCIN1 Gene

Disorders for SRCIN1 Gene

MalaCards: The human disease database

(17) MalaCards diseases for SRCIN1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
sclerosing keratitis
  • sclerokeratitis
punctate epithelial keratoconjunctivitis
  • punctate keratitis
anterior scleritis
deep keratitis
loiasis
  • african eye worm
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SRCIN1

Genetic Association Database (GAD)
SRCIN1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SRCIN1
genes like me logo Genes that share disorders with SRCIN1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SRCIN1 Gene

Publications for SRCIN1 Gene

  1. p130Cas-associated protein (p140Cap) as a new tyrosine-phosphorylated protein involved in cell spreading. (PMID: 14657239) Di Stefano P. … Defilippi P. (Mol. Biol. Cell 2004) 3 4 22 64
  2. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 64
  3. Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity. (PMID: 19146815) Jaworski J. … Hoogenraad C.C. (Neuron 2009) 3 4 64
  4. SNIP/p140Cap mRNA expression is an unfavourable prognostic factor in breast cancer and is not expressed in normal breast tissue. (PMID: 18475297) Kennedy S. … O'Driscoll L. (Br. J. Cancer 2008) 3 4 64
  5. Characterization of a multidomain adaptor protein, p140Cap, as part of a pre-synaptic complex. (PMID: 18662323) Ito H. … Nagata K. (J. Neurochem. 2008) 3 4 64

Products for SRCIN1 Gene

Sources for SRCIN1 Gene

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