SRC Gene
protein-coding GIFtS : 72
GC20P035406
v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) (Previous name: v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: SRC1 )
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Aliases & Descriptions for SRC
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ASV 1 , 2 , 5 EC 2.7.10.2 3 OTTHUMP00000174476 2 OTTHUMP00000174477 2 SRC1 2 , 3 , 5 c-SRC 2 c-Src 3 c-src 1 p60-Src 2 , 3 pp60c-src 3
Descriptions proto-oncogene tyrosine-protein kinase SRC 2 protooncogene SRC, Rous sarcoma 2 tyrosine kinase pp60c-src 2 tyrosine-protein kinase SRC-1 2 v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog 1 v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 2
Search outside databases for aliases for SRC genePrevious GC identifers: GC20P035740 GC20P036650 GC20P036696 GC20P036658
Summaries for SRC (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for SRC : This gene is highly similar to the v-src gene of Rous sarcoma virus. This proto-oncogene may play arole in the regulation of embryonic development and cell growth. The protein encoded by this geneis a tyrosine-protein kinase whose activity can be inhibited by phosphorylation by c-SRC kinase.Mutations in this gene could be involved in the malignant progression of colon cancer. Twotranscript variants encoding the same protein have been found for this gene. [provided by RefSeq] Gene Wiki entry for SRC (Src)
Genomic Location for SRC
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SRC gene Entrez Gene cytogenetic band: 20q12-q13 Ensembl cytogenetic band: 20q11.23 HGNC cytogenetic band: 20q12-q13 SRC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20P035406:
(about GC identifiers )
Start:
35,406,502 bp from pter
End:
35,467,867 bp from pter
Size:
61,366 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000020.9 NT_011362.9 Proteins for SRC
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SRC_HUMAN, P12931 (See
protein sequence )Recommended Name: Proto-oncogene tyrosine-protein kinase Src Size : 536 amino acids; 59835 Da
Subunit : Interacts with DDEF1/ASAP1; via the SH3 domain. Interacts with CCPG1 (By similarity).Interacts with CDCP1, PELP1, TGFB1I1 and TOM1L2. Interacts with the cytoplasmic domain of MUC1,phosphorylates it and increases binding of MUC1 with beta-catenin. Interacts with RALGPS1; via theSH3 domain. Interacts with HEV ORF3 protein; via the SH3 domain
PDB structures from and Proteopedia : 1A07 (3D)
 1A08 (3D)
 1A09 (3D)
 1A1A (3D)
 1A1B (3D)
 1A1C (3D)
 1A1E (3D)
 1FMK (3D)
 1HCS (3D)
 1HCT (3D)
 1KSW (3D)
 1O41 (3D)
 1O42 (3D)
 1O43 (3D)
 1O44 (3D)
 1O45 (3D)
 1O46 (3D)
 1O47 (3D)
 1O48 (3D)
 1O49 (3D)
 1O4A (3D)
 1O4B (3D)
 1O4C (3D)
 1O4D (3D)
 1O4E (3D)
 1O4F (3D)
 1O4G (3D)
 1O4H (3D)
 1O4I (3D)
 1O4J (3D)
 1O4K (3D)
 1O4L (3D)
 1O4M (3D)
 1O4N (3D)
 1O4O (3D)
 1O4P (3D)
 1O4Q (3D)
 1O4R (3D)
 1SHD (3D)
 1Y57 (3D)
 1YI6 (3D)
 1YOJ (3D)
 1YOL (3D)
 1YOM (3D)
 2BDF (3D)
 2BDJ (3D)
 2H8H (3D)
 2SRC (3D)
 
Secondary accessions : Q86VB9 Q9H5A8Alternative splicing : 2 isoforms : P12931-1 P12931-2
Post-translational modifications:
Phosphorylated on Tyr-530 by c-Src kinase (CSK). The phosphorylated form is termed pp60c-src. Thephosphorylated tail interacts with the SH2 domain thereby repressing kinase activity1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_005408.1 NP_938033.1 ENSEMBL proteins: ENSP00000353950 ENSP00000362668 ENSP00000362659 ENSP00000362680 ENSP00000350941 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SRC: Assays for SRC:
Protein
Domains/ Families for SRC(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P12931 ProtoNet protein and cluster: P12931
3 Blocks protein families : IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: SRC_HUMAN, P12931 Similarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamilySimilarity : Contains 1 protein kinase domainSimilarity : Contains 1 SH2 domainSimilarity : Contains 1 SH3 domain
Gene Function for SRC
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (SRC ) Millipore RNAi Products for the Analysis of SRC Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (SRC )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_198291 Applied Biosystems Silencer ® siRNAs for SRC Sigma-Aldrich siRNA and siRNA Panels for SRC Sigma-Aldrich shRNA Panels and shRNA for SRC Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005417                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005417                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005417  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005417 UniProtKB/Swiss-Prot: SRC_HUMAN, P12931 Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.2
Genatlas biochemistry entry for SRC :avian sarcoma (Schmidt-Ruppin A-2) viral (v-src) oncogene homolog
15/16 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Src) (see all 16
):5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
About this table
Pathways & Interactions for SRC
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/34 Sigma-Aldrich "Your Favorite Gene" Pathways for SRC (Your Favorite Gene powered by Ingenuity) (see all 34
) Gene Network CentralTM Interacting Genes and Proteins Network for SRC 5/643 Interacting proteins for SRC (P12931 1 , 2 ENSP00000362659 3 ) via UniProtKB, MINT, and/or STRING (see all 643
)About this table 5/19 Gene Ontology (GO) biological process terms (links to tree view) (see all 19
):
About this table
Drugs & Compounds for SRC (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for SRC
Compounds for SRC available from Tocris Bioscience Compound Action
CAS
number Herbimycin A Src family kinase inhibitor. Also Hsp90 inhibitor [70563-58-5] Lavendustin A EGFR, p60c-src inhibitor [125697-92-9] 1-Naphthyl PP1 Src family kinase inhibitor; also inhibits c-Abl [221243-82-9] MNS Selective inhibitor of Src and Syk [1485-00-3]
About this table 10/26 Novoseek chemical compound relationships for SRC gene (see all 26
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
94.69
2639
9096689 (6), 11641791 (6), 9331427 (5), 12869565 (5) (see all 99 )
phosphotyrosine
87.72
146
9337879 (2), 10880360 (2), 16611216 (2), 11493667 (2) (see all 99 )
4-amino-5-(4-chlorophenyl)-7-(t-butyl)pyrazolo[3,4-d]pyrimidine
84.06
15
15618223 (1), 16669788 (1), 19145781 (1), 12739161 (1) (see all 12 )
phosphatidylinositol
80.79
178
1332046 (2), 9565618 (2), 11230874 (2), 7538175 (2) (see all 99 )
cgp77675
75.47
7
11840778 (1), 14521054 (1), 10833396 (1), 15087474 (1) (see all 6 )
phosphoinositide
65.53
55
1311317 (3), 15817454 (2), 15556934 (2), 10880360 (1) (see all 42 )
wortmannin
63.09
24
17299794 (2), 10393094 (1), 11069718 (1), 11267999 (1) (see all 18 )
pd173955
62.78
1
10373450 (1)
pd 98,059
60.90
16
14570928 (1), 17526768 (1), 10779380 (1), 12925710 (1) (see all 14 )
threonine
59.82
36
7516061 (3), 1379736 (2), 7690037 (2), 12378693 (2) (see all 26 )
About this table 2 PharmGKB drug compound relationships for SRC gene About this table
Transcripts for SRC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (SRC ) Millipore RNAi Products for the Analysis of SRC Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (SRC )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_198291 Sigma-Aldrich siRNA and siRNA Panels for SRC Sigma-Aldrich shRNA Panels and shRNA for SRC Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005417 NM_198291
REFSEQ mRNAs for SRC gene (2 alternative transcripts): NM_005417.3 NM_198291.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005417 NM_198291
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005417                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005417                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005417  
Additional cDNA sequence: AF272982.1 AK024281.1 BC011566.1 BC051270.1 Z18364.1
11 DOTS entries : DT.310679 DT.95082049 DT.75101398 DT.100820136 DT.95118917 DT.91929476 DT.95082051 DT.120827952 DT.120827971 DT.75180400 DT.95358075
24/131 AceView cDNA sequences (see all 131
):CD365254 NM_198291 BC011566 AW298220 BM761470 CD369263 AK024281 CA502880 NM_005417 CD364525 AI282193 BE391008 BM352972 AW135290 BC051270 BQ941942 BE467452 CK821940 BF685697 BE388654 BE732984 BE504806 CD742807 BQ924865
highest scoring ESTs for SRC :AA398992 AA399627 AA402622 AA729487 AA999869 AI536788 AI564897 AK024281 AW275187 AW364235
Unigene Cluster for SRC: V-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) Hs.195659 [show with all ESTs ] Unigene Representative Sequence: NM_005417 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for SRC (see all 8
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15 SP1 :     -           -           -             -   -       -     SP2 :               -           -             -   -       -     SP3 :                                     -   -       -     SP4 :                         -                         SP5 :     -                                            
About this scheme ECgene alternative splicing isoforms for SRC 5 Ensembl transcripts including schematic representations : ENST00000360723
ENST00000373567
ENST00000373558
ENST00000373578
ENST00000358208
Expression for SRC
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SRC expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SRC 1 / 2 / 3
9 probe-sets matching SRC gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.195659 Expression variation in blood from EXPOLDB for SRC
Orthologs for SRC
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SRC gene from 5/11 species (see all 11
)
About this table Species with no ortholog for SRC ENSEMBL Gene Tree for SRC Paralogs for SRC (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SRC gene FYN 2 FGR 2 YES1 2
SNPs/Variants for SRC (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SRC (up to first 250kb)
Disorders & Mutations for SRC
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 190090
10/92 Novoseek disease relationships for SRC gene (see all 92
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
sarcoma rous
57.17
35
7609076 (3), 7853507 (2), 14969582 (1), 16211495 (1) (see all 21 )
tumors
56.72
340
10022129 (5), 10473101 (5), 18556171 (4), 16951177 (4) (see all 99 )
cancer
56.07
225
19307596 (5), 14760089 (4), 15060621 (4), 11114744 (4) (see all 99 )
breast cancer
55.69
214
19383905 (5), 9014858 (5), 11007774 (4), 19372587 (4) (see all 99 )
wiskott-aldrich syndrome
53.64
8
8824280 (3), 8892607 (1), 15673667 (1), 16741966 (1) (see all 6 )
colon cancer
52.55
97
17934522 (5), 9444956 (4), 12939401 (4), 18839319 (4) (see all 45 )
metastasis
45.96
127
7687314 (6), 19383905 (4), 15753384 (4), 9142389 (3) (see all 66 )
x-linked agammaglobulinemia
45.83
2
7519238 (1), 7880320 (1)
cancer invasiveness
42.22
1
19383905 (1)
prostate cancer
40.45
53
16894533 (4), 18679417 (4), 16140968 (4), 17426060 (4) (see all 27 )
About this table 3 PharmGKB disease relationships for SRC gene About this table Human Gene Mutation Database : SRC Tumor Gene Database : SRC Breast Cancer Gene Database : SRC
Medical News for SRC (Possibly Related Articles in
Doctor's Guide )
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Publications for SRC (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/2561 PubMed articles for SRC gene (see all 2561
): Human cellular src gene: nucleotide sequence and derived amino acid sequence of the region coding for the carboxy-terminal two-thirds of pp60c-src. (PubMed id 2582238) 2, 3, 4 Anderson S.K.... Fujita D.J. (1985) The c-Src tyrosine kinase regulates signaling of the human DF3/MUC1 carcinoma-associated antigen with GSK3 beta and beta-catenin. (PubMed id 11152665) 1, 3, 4 Li Y....Kufe D. (2001) Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. (PubMed id 17192257) 3, 4 Wissing J.... Daub H. (2007) The adaptor protein Tom1L1 is a negative regulator of Src mitogenic signaling induced by growth factors. (PubMed id 16479011) 3, 4 Franco M.... Roche S. (2006) The C2 domain of PKCdelta is a phosphotyrosine binding domain. (PubMed id 15851033) 3, 4 Benes C.H.... Soltoff S.P. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Estrogen receptor-interacting protein that modulates its nongenomic activity-crosstalk with Src/Erk phosphorylation cascade. (PubMed id 12415108) 3, 4 Wong C.-W.... Cheskis B.J. (2002) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 3, 4 Deloukas P....Rogers J. (2001) Peptide ligands of pp60(c-src) SH2 domains: a thermodynamic and structural study. (PubMed id 9174343) 3, 4 Charifson P.S....Consler T.G. (1997) Three-dimensional structure of the tyrosine kinase c-Src. (PubMed id 9024657) 3, 4 Xu W.... Eck M.J. (1997)
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-- Services for SRC (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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