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Aliases for SPTY2D1-AS1 Gene

Subcategory (RNA class) for SPTY2D1-AS1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for SPTY2D1-AS1 Gene

  • SPTY2D1 Antisense RNA 1 2 3 5
  • SPTY2D1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPTY2D1-AS1 Gene

Previous GeneCards Identifiers for SPTY2D1-AS1 Gene

  • GC11P018623

Summaries for SPTY2D1-AS1 Gene

GeneCards Summary for SPTY2D1-AS1 Gene

SPTY2D1-AS1 (SPTY2D1 Antisense RNA 1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for SPTY2D1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPTY2D1-AS1 Gene

Genomics for SPTY2D1-AS1 Gene

Regulatory Elements for SPTY2D1-AS1 Gene

Enhancers for SPTY2D1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H018525 1.1 ENCODE 10.2 -61.8 -61814 2.6 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 TSG101 LDHC LDHA GTF2H1 HPS5 SPTY2D1-AS1 LOC100129966 GC11P018527 ENSG00000256361
GH11H018720 1.1 Ensembl ENCODE 9.9 +132.5 132533 2.3 CTCF MXI1 KLF1 ZNF76 RAD21 ZFHX2 GLIS2 POLR2A PATZ1 SMC3 LOC100129966 SPTY2D1-AS1 ST13P5 LOC105376579 IGSF22
GH11H018670 1 Ensembl ENCODE 10.1 +80.7 80717 0.2 SMARCE1 PKNOX1 ETV1 USF2 DPF2 CEBPG FOSL1 JUND GATA3 ZNF316 TMEM86A SPTY2D1 LOC105376579 IGSF22 LOC100129966 SPTY2D1-AS1 LOC100506569
GH11H018279 0.9 Ensembl ENCODE 9.2 -307.5 -307534 2.9 PKNOX1 JUNB ELF1 DPF2 BATF ZNF217 IKZF1 ATF7 IKZF2 RUNX3 GTF2H1 HPS5 LOC494141 LOC645319 LDHA SPTY2D1-AS1 LOC100129966 RNA5SP334
GH11H018524 0.8 FANTOM5 9.9 -64.1 -64093 0.3 ELF3 SOX13 TFAP4 SAP130 ZNF644 RARA NR2F6 THAP11 GATAD2A SOX5 LOC100129966 LDHA HPS5 GTF2H1 SPTY2D1-AS1 LOC105376579 IGSF22 SPTY2D1 TSG101 GC11P018527
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPTY2D1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SPTY2D1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000037625 -181 2001 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 DEK SP3 SP5

Genomic Locations for SPTY2D1-AS1 Gene

Genomic Locations for SPTY2D1-AS1 Gene
chr11:18,588,781-18,610,255
(GRCh38/hg38)
Size:
21,475 bases
Orientation:
Plus strand
chr11:18,621,334-18,631,802
(GRCh37/hg19)

Genomic View for SPTY2D1-AS1 Gene

Genes around SPTY2D1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTY2D1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTY2D1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTY2D1-AS1 Gene

Proteins for SPTY2D1-AS1 Gene

  • Protein details for SPTY2D1-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQQ8
    Recommended name:
    SPTY2D1 antisense RNA 1
    Protein Accession:
    A0A0U1RQQ8

    Protein attributes for SPTY2D1-AS1 Gene

    Size:
    56 amino acids
    Molecular mass:
    6619 Da
    Quaternary structure:
    No Data Available
  • Protein details for SPTY2D1-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQZ7
    Recommended name:
    SPTY2D1 antisense RNA 1
    Protein Accession:
    A0A0U1RQZ7

    Protein attributes for SPTY2D1-AS1 Gene

    Size:
    40 amino acids
    Molecular mass:
    4451 Da
    Quaternary structure:
    No Data Available
  • Protein details for SPTY2D1-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RR47
    Recommended name:
    SPTY2D1 antisense RNA 1
    Protein Accession:
    A0A0U1RR47

    Protein attributes for SPTY2D1-AS1 Gene

    Size:
    76 amino acids
    Molecular mass:
    8821 Da
    Quaternary structure:
    No Data Available
  • Protein details for SPTY2D1-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RRN3
    Recommended name:
    HCG1992263
    Protein Accession:
    A0A0U1RRN3

    Protein attributes for SPTY2D1-AS1 Gene

    Size:
    59 amino acids
    Molecular mass:
    6977 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPTY2D1-AS1 Gene

Post-translational modifications for SPTY2D1-AS1 Gene

No Post-translational modifications

Other Protein References for SPTY2D1-AS1 Gene

No data available for DME Specific Peptides for SPTY2D1-AS1 Gene

Domains & Families for SPTY2D1-AS1 Gene

Gene Families for SPTY2D1-AS1 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins
  • Predicted secreted proteins

Protein Domains for SPTY2D1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPTY2D1-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPTY2D1-AS1 Gene

Function for SPTY2D1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPTY2D1-AS1 Gene

Localization for SPTY2D1-AS1 Gene

Gene Ontology (GO) - Cellular Components for SPTY2D1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPTY2D1-AS1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SPTY2D1-AS1 Gene

Pathways & Interactions for SPTY2D1-AS1 Gene

SuperPathways for SPTY2D1-AS1 Gene

No Data Available

Interacting Proteins for SPTY2D1-AS1 Gene

Gene Ontology (GO) - Biological Process for SPTY2D1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPTY2D1-AS1 Gene

Drugs & Compounds for SPTY2D1-AS1 Gene

No Compound Related Data Available

Transcripts for SPTY2D1-AS1 Gene

mRNA/cDNA for SPTY2D1-AS1 Gene

(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPTY2D1-AS1 Gene

SPTY2D1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPTY2D1-AS1 Gene

No ASD Table

Relevant External Links for SPTY2D1-AS1 Gene

GeneLoc Exon Structure for
SPTY2D1-AS1
ECgene alternative splicing isoforms for
SPTY2D1-AS1

Expression for SPTY2D1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPTY2D1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SPTY2D1-AS1 Gene

This gene is overexpressed in Testis (x17.3).

SOURCE GeneReport for Unigene cluster for SPTY2D1-AS1 Gene:

Hs.585529
genes like me logo Genes that share expression patterns with SPTY2D1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPTY2D1-AS1 Gene

Orthologs for SPTY2D1-AS1 Gene

Evolution for SPTY2D1-AS1 Gene

ENSEMBL:
Gene Tree for SPTY2D1-AS1 (if available)
TreeFam:
Gene Tree for SPTY2D1-AS1 (if available)

No data available for Orthologs for SPTY2D1-AS1 Gene

Paralogs for SPTY2D1-AS1 Gene

No data available for Paralogs for SPTY2D1-AS1 Gene

Variants for SPTY2D1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPTY2D1-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000018382 -- 18,599,636(+) AATGG(A/G/T)GTTAA upstream-variant-2KB
rs1000525334 -- 18,605,403(+) CAGTT(A/C)CAGTA intron-variant
rs1000583146 -- 18,599,753(+) ATGCC(C/T)TACTA upstream-variant-2KB
rs1000913555 -- 18,604,401(+) GTGTG(A/T)TCTCA intron-variant
rs1000959804 -- 18,605,698(+) CGTAA(C/T)ACATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPTY2D1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv553633 CNV gain 21841781
nsv516413 CNV loss 19592680
esv3625506 CNV loss 21293372
esv3547393 CNV deletion 23714750
esv2761651 CNV loss 21179565
esv2660842 CNV deletion 23128226

Relevant External Links for SPTY2D1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPTY2D1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPTY2D1-AS1 Gene

Disorders for SPTY2D1-AS1 Gene

Relevant External Links for SPTY2D1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPTY2D1-AS1

No disorders were found for SPTY2D1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPTY2D1-AS1 Gene

Publications for SPTY2D1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SPTY2D1-AS1 Gene

Sources for SPTY2D1-AS1 Gene

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