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Aliases for SPTLC1P2 Gene

Aliases for SPTLC1P2 Gene

  • Serine Palmitoyltransferase Long Chain Base Subunit 1 Pseudogene 2 2 3 5

External Ids for SPTLC1P2 Gene

Previous GeneCards Identifiers for SPTLC1P2 Gene

  • GC00U932237

Summaries for SPTLC1P2 Gene

GeneCards Summary for SPTLC1P2 Gene

SPTLC1P2 (Serine Palmitoyltransferase Long Chain Base Subunit 1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPTLC1P2 Gene

Genomics for SPTLC1P2 Gene

Regulatory Elements for SPTLC1P2 Gene

Enhancers for SPTLC1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F024716 0.5 ENCODE 16.2 -863.1 -863102 5.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 C6orf62 TDP2 ENSG00000223623 ENSG00000230372 LOC101928663 SPTLC1P2 ACOT13 ENSG00000272402 KIAA0319
GH06F024583 1.2 Ensembl ENCODE 16.2 -727.5 -727461 2.0 PKNOX1 FEZF1 ZNF2 ZNF121 ZNF143 ZNF207 KLF7 ZNF263 SP3 MXD4 ACOT13 ENSG00000230372 ENSG00000223623 LOC101928663 SPTLC1P2 KIAA0319 TDP2 ALDH5A1 GPLD1 PIR39702
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPTLC1P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPTLC1P2 Gene

Chromosome:
6
Start:
23,856,563 bp from pter
End:
23,856,818 bp from pter
Size:
256 bases
Orientation:
Minus strand

Genomic View for SPTLC1P2 Gene

Genes around SPTLC1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTLC1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTLC1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTLC1P2 Gene

Proteins for SPTLC1P2 Gene

Post-translational modifications for SPTLC1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPTLC1P2 Gene

Domains & Families for SPTLC1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPTLC1P2 Gene

Function for SPTLC1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPTLC1P2 Gene

Localization for SPTLC1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPTLC1P2 Gene

Pathways & Interactions for SPTLC1P2 Gene

SuperPathways for SPTLC1P2 Gene

No Data Available

Interacting Proteins for SPTLC1P2 Gene

Gene Ontology (GO) - Biological Process for SPTLC1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPTLC1P2 Gene

Transcripts for SPTLC1P2 Gene

mRNA/cDNA for SPTLC1P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPTLC1P2 Gene

No ASD Table

Relevant External Links for SPTLC1P2 Gene

GeneLoc Exon Structure for
SPTLC1P2
ECgene alternative splicing isoforms for
SPTLC1P2

Expression for SPTLC1P2 Gene

mRNA expression in normal human tissues for SPTLC1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SPTLC1P2 Gene:

SPTLC1P2
genes like me logo Genes that share expression patterns with SPTLC1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPTLC1P2 Gene

Orthologs for SPTLC1P2 Gene

Evolution for SPTLC1P2 Gene

ENSEMBL:
Gene Tree for SPTLC1P2 (if available)
TreeFam:
Gene Tree for SPTLC1P2 (if available)

No data available for Orthologs for SPTLC1P2 Gene

Paralogs for SPTLC1P2 Gene

No data available for Paralogs for SPTLC1P2 Gene

Variants for SPTLC1P2 Gene

Relevant External Links for SPTLC1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPTLC1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPTLC1P2 Gene

Disorders for SPTLC1P2 Gene

No disorders were found for SPTLC1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPTLC1P2 Gene

Publications for SPTLC1P2 Gene

No publications were found for SPTLC1P2 Gene.

Products for SPTLC1P2 Gene

Sources for SPTLC1P2 Gene

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