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Aliases for SPTLC1P1 Gene

Subcategory (RNA class) for SPTLC1P1 Gene


Aliases for SPTLC1P1 Gene

  • Serine Palmitoyltransferase Long Chain Base Subunit 1 Pseudogene 1 2 3 5

External Ids for SPTLC1P1 Gene

ORGUL Members for SPTLC1P1 Gene

Previous GeneCards Identifiers for SPTLC1P1 Gene

  • GC00U931771
  • GC10P031650

Summaries for SPTLC1P1 Gene

GeneCards Summary for SPTLC1P1 Gene

SPTLC1P1 (Serine Palmitoyltransferase Long Chain Base Subunit 1 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SPTLC1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPTLC1P1 Gene

Genomics for SPTLC1P1 Gene

Regulatory Elements for SPTLC1P1 Gene

Enhancers for SPTLC1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H030430 1.8 FANTOM5 ENCODE dbSUPER 18.8 -926.0 -926028 8.8 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SPTLC1P1 MAP3K8 CCND3P1 GC10P030465
GH10H031316 1.6 Ensembl ENCODE dbSUPER 10.2 -40.9 -40860 6.2 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 MTPAP ZEB1-AS1 ENSG00000226842 SPTLC1P1 SVILP1 ZEB1
GH10H031803 1 Ensembl ENCODE 4.6 +445.6 445560 5.8 HDGF CTCF CEBPG RAD21 ZKSCAN1 SCRT2 SMC3 TRIM24 NFE2 RUNX3 KIF5B ARHGAP12 SPTLC1P1 CCDC7 ENSG00000222412 HMGB1P7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPTLC1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPTLC1P1 Gene

Genomic Locations for SPTLC1P1 Gene
261 bases
Plus strand

Genomic View for SPTLC1P1 Gene

Genes around SPTLC1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTLC1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTLC1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTLC1P1 Gene

Proteins for SPTLC1P1 Gene

Post-translational modifications for SPTLC1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPTLC1P1 Gene

Domains & Families for SPTLC1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPTLC1P1 Gene

Function for SPTLC1P1 Gene

Phenotypes From GWAS Catalog for SPTLC1P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPTLC1P1 Gene

Localization for SPTLC1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPTLC1P1 Gene

Pathways & Interactions for SPTLC1P1 Gene

SuperPathways for SPTLC1P1 Gene

No Data Available

Interacting Proteins for SPTLC1P1 Gene

Gene Ontology (GO) - Biological Process for SPTLC1P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SPTLC1P1 Gene

Drugs & Compounds for SPTLC1P1 Gene

No Compound Related Data Available

Transcripts for SPTLC1P1 Gene

mRNA/cDNA for SPTLC1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPTLC1P1 Gene

No ASD Table

Relevant External Links for SPTLC1P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPTLC1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPTLC1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SPTLC1P1 Gene:

genes like me logo Genes that share expression patterns with SPTLC1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPTLC1P1 Gene

Orthologs for SPTLC1P1 Gene

Evolution for SPTLC1P1 Gene

Gene Tree for SPTLC1P1 (if available)
Gene Tree for SPTLC1P1 (if available)

No data available for Orthologs for SPTLC1P1 Gene

Paralogs for SPTLC1P1 Gene

No data available for Paralogs for SPTLC1P1 Gene

Variants for SPTLC1P1 Gene

Relevant External Links for SPTLC1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPTLC1P1 Gene

Disorders for SPTLC1P1 Gene

No disorders were found for SPTLC1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPTLC1P1 Gene

Publications for SPTLC1P1 Gene

No publications were found for SPTLC1P1 Gene.

Products for SPTLC1P1 Gene

Sources for SPTLC1P1 Gene

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