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Aliases for SPTLC1P1 Gene

Subcategory (RNA class) for SPTLC1P1 Gene

lncRNA

Aliases for SPTLC1P1 Gene

  • Serine Palmitoyltransferase Long Chain Base Subunit 1 Pseudogene 1 2 3 5

External Ids for SPTLC1P1 Gene

ORGUL Members for SPTLC1P1 Gene

Previous GeneCards Identifiers for SPTLC1P1 Gene

  • GC00U931771
  • GC10P031650

Summaries for SPTLC1P1 Gene

GeneCards Summary for SPTLC1P1 Gene

SPTLC1P1 (Serine Palmitoyltransferase Long Chain Base Subunit 1 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPTLC1P1 Gene

Genomics for SPTLC1P1 Gene

Regulatory Elements for SPTLC1P1 Gene

Enhancers for SPTLC1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F030430 1.1 FANTOM5 ENCODE 18.8 -926.0 -926028 8.8 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SPTLC1P1 DDX10P1 MTPAP MAP3K8 CCND3P1 GC10P030465
GH10F031030 0.5 ENCODE 11.8 -328.3 -328258 5.2 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 MTPAP DDX10P1 ENSG00000272381 SPTLC1P1 ZEB1-AS1 ZNF438 LOC105376481
GH10F030500 1.3 FANTOM5 Ensembl ENCODE 11.8 -857.4 -857355 6.8 ATF1 ZFP64 ZNF121 ZNF202 JUNB REST TBX21 ZNF623 ZNF518A ZNF264 MTPAP MAP3K8 ZEB1-AS1 ZNF438 SPTLC1P1 DDX10P1 HNRNPA1P32 GC10P030465
GH10F031918 0.9 Ensembl 11.8 +558.3 558346 1.4 ARNT ZNF493 ZFP64 ARID4B ZSCAN9 RAD21 ZNF354C ZNF138 SCRT2 ZNF143 ENSG00000226842 ZEB1-AS1 KIF5B RPS4XP11 SPTLC1P1 DDX10P1 CCDC7 HMGB1P7 ARHGAP12
GH10F030742 0.9 FANTOM5 ENCODE 11.8 -617.1 -617121 2.4 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 YY1 ZNF143 ZNF207 FOS KLF13 MTPAP MAP3K8 SPTLC1P1 DDX10P1 ZNF438 LOC105376480 ENSG00000272914
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPTLC1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPTLC1P1 Gene

Chromosome:
10
Start:
31,360,955 bp from pter
End:
31,361,215 bp from pter
Size:
261 bases
Orientation:
Plus strand

Genomic View for SPTLC1P1 Gene

Genes around SPTLC1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTLC1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTLC1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTLC1P1 Gene

Proteins for SPTLC1P1 Gene

Post-translational modifications for SPTLC1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPTLC1P1 Gene

Domains & Families for SPTLC1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPTLC1P1 Gene

Function for SPTLC1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPTLC1P1 Gene

Localization for SPTLC1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPTLC1P1 Gene

Pathways & Interactions for SPTLC1P1 Gene

SuperPathways for SPTLC1P1 Gene

No Data Available

Interacting Proteins for SPTLC1P1 Gene

Gene Ontology (GO) - Biological Process for SPTLC1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPTLC1P1 Gene

Transcripts for SPTLC1P1 Gene

mRNA/cDNA for SPTLC1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPTLC1P1 Gene

No ASD Table

Relevant External Links for SPTLC1P1 Gene

GeneLoc Exon Structure for
SPTLC1P1
ECgene alternative splicing isoforms for
SPTLC1P1

Expression for SPTLC1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPTLC1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SPTLC1P1 Gene:

SPTLC1P1
genes like me logo Genes that share expression patterns with SPTLC1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPTLC1P1 Gene

Orthologs for SPTLC1P1 Gene

Evolution for SPTLC1P1 Gene

ENSEMBL:
Gene Tree for SPTLC1P1 (if available)
TreeFam:
Gene Tree for SPTLC1P1 (if available)

No data available for Orthologs for SPTLC1P1 Gene

Paralogs for SPTLC1P1 Gene

No data available for Paralogs for SPTLC1P1 Gene

Variants for SPTLC1P1 Gene

Relevant External Links for SPTLC1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPTLC1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPTLC1P1 Gene

Disorders for SPTLC1P1 Gene

No disorders were found for SPTLC1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPTLC1P1 Gene

Publications for SPTLC1P1 Gene

No publications were found for SPTLC1P1 Gene.

Products for SPTLC1P1 Gene

Sources for SPTLC1P1 Gene

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