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Aliases for SPTBN5 Gene

Aliases for SPTBN5 Gene

  • Spectrin Beta, Non-Erythrocytic 5 2 3 5
  • Beta V Spectrin 2 3
  • HUBSPECV 3 4
  • HUSPECV 3 4
  • BSPECV 3 4
  • Spectrin Beta Chain, Non-Erythrocytic 5 3
  • Spectrin, Non-Erythroid Beta Chain 4 3
  • Spectrin Beta Chain, Brain 4 3
  • Beta-V Spectrin 4

External Ids for SPTBN5 Gene

Previous GeneCards Identifiers for SPTBN5 Gene

  • GC15M037508
  • GC15M035036
  • GC15M039719
  • GC15M039856
  • GC15M039927
  • GC15M042140
  • GC15M018988

Summaries for SPTBN5 Gene

GeneCards Summary for SPTBN5 Gene

SPTBN5 (Spectrin Beta, Non-Erythrocytic 5) is a Protein Coding gene. Diseases associated with SPTBN5 include Macular Holes. Among its related pathways are RET signaling and Transport to the Golgi and subsequent modification. GO annotations related to this gene include actin binding and kinesin binding. An important paralog of this gene is SPTBN4.

Gene Wiki entry for SPTBN5 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPTBN5 Gene

Genomics for SPTBN5 Gene

Regulatory Elements for SPTBN5 Gene

Enhancers for SPTBN5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F041925 1.7 FANTOM5 Ensembl ENCODE 41.8 -42.7 -42749 23.4 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 BRCA1 YY1 GATA2 ZNF143 SPTBN5 EHD4 LOC105370792 LTK JMJD7 PLA2G4E-AS1 ENSG00000250379 JMJD7-PLA2G4B MAPKBP1 PLA2G4E
GH15F041913 1.3 Ensembl ENCODE 49.2 -23.7 -23687 8.9 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF143 SPTBN5 CDAN1 LOC105370792 ENSG00000260814 EHD4 PLA2G4E-AS1 MAPKBP1 TYRO3 RPAP1 LOC105370795
GH15F041903 0.8 ENCODE 42 -10.7 -10719 1.6 HDGF GTF2F1 CTCF PKNOX1 SAP130 WRNIP1 RAD21 RFX5 TEAD3 ZNF316 SPTBN5 MAPKBP1 LOC105370792 PLA2G4F ENSG00000278493 GC15M041900
GH15F041772 1.1 ENCODE 23.5 +118.1 118079 6.4 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 JMJD7 SPTBN5 ENSG00000250379 JMJD7-PLA2G4B LOC105370792 RPAP1 RNU6-1169P LTK PLA2G4B NDUFAF1
GH15F041891 1.1 Ensembl ENCODE 19.5 -0.3 -307 5.2 KLF17 RAD21 GLIS2 ZNF143 FOS EGR2 SMARCA5 JUNB REST ZFP69B SPTBN5 LOC105370792 PLA2G4B TYRO3 GC15M041900
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPTBN5 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPTBN5 Gene

Chromosome:
15
Start:
41,848,144 bp from pter
End:
41,894,077 bp from pter
Size:
45,934 bases
Orientation:
Minus strand

Genomic View for SPTBN5 Gene

Genes around SPTBN5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTBN5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTBN5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTBN5 Gene

Proteins for SPTBN5 Gene

  • Protein details for SPTBN5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NRC6-SPTN5_HUMAN
    Recommended name:
    Spectrin beta chain, non-erythrocytic 5
    Protein Accession:
    Q9NRC6

    Protein attributes for SPTBN5 Gene

    Size:
    3674 amino acids
    Molecular mass:
    416750 Da
    Quaternary structure:
    • Probably associates with an alpha chain. Interacts (via C-terminus) with TRPC4.

neXtProt entry for SPTBN5 Gene

Post-translational modifications for SPTBN5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPTBN5 Gene

No data available for DME Specific Peptides for SPTBN5 Gene

Domains & Families for SPTBN5 Gene

Gene Families for SPTBN5 Gene

Suggested Antigen Peptide Sequences for SPTBN5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NRC6

UniProtKB/Swiss-Prot:

SPTN5_HUMAN :
  • Contains 2 CH (calponin-homology) domains.
  • Belongs to the spectrin family.
  • Contains 31 spectrin repeats.
Domain:
  • Contains 2 CH (calponin-homology) domains.
  • Contains 1 PH domain.
Family:
  • Belongs to the spectrin family.
Similarity:
  • Contains 31 spectrin repeats.
genes like me logo Genes that share domains with SPTBN5: view

Function for SPTBN5 Gene

Gene Ontology (GO) - Molecular Function for SPTBN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding NAS 10764729
GO:0005088 Ras guanyl-nucleotide exchange factor activity TAS --
GO:0019894 kinesin binding IDA 23704327
GO:0030507 spectrin binding IDA 23704327
GO:0032029 myosin tail binding IDA 23704327
genes like me logo Genes that share ontologies with SPTBN5: view
genes like me logo Genes that share phenotypes with SPTBN5: view

Animal Model Products

miRNA for SPTBN5 Gene

miRTarBase miRNAs that target SPTBN5

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SPTBN5 Gene

Localization for SPTBN5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPTBN5 Gene

Cytoplasm, cytoskeleton. Note=Detected prominently in the outer segments of photoreceptor rods and cones and in the basolateral membrane and cytosol of gastric epithelial cells.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPTBN5 gene
Compartment Confidence
plasma membrane 5
extracellular 5
cytoskeleton 5
cytosol 5
mitochondrion 1
peroxisome 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SPTBN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 23704327
GO:0005829 cytosol TAS --
GO:0005856 cytoskeleton IEA --
GO:0008091 spectrin NAS 10764729
GO:0016020 membrane NAS 10764729
genes like me logo Genes that share ontologies with SPTBN5: view

Pathways & Interactions for SPTBN5 Gene

SuperPathways for SPTBN5 Gene

SuperPathway Contained pathways
1 RET signaling
2 Transport to the Golgi and subsequent modification
3 Sertoli-Sertoli Cell Junction Dynamics
4 Developmental Biology
5 Cytokine Signaling in Immune system
genes like me logo Genes that share pathways with SPTBN5: view

Gene Ontology (GO) - Biological Process for SPTBN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade TAS --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0007030 Golgi organization IMP 23704327
GO:0007041 lysosomal transport IMP 23704327
GO:0007411 axon guidance TAS --
genes like me logo Genes that share ontologies with SPTBN5: view

No data available for SIGNOR curated interactions for SPTBN5 Gene

Transcripts for SPTBN5 Gene

mRNA/cDNA for SPTBN5 Gene

Unigene Clusters for SPTBN5 Gene

Spectrin, beta, non-erythrocytic 5:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPTBN5 Gene

No ASD Table

Relevant External Links for SPTBN5 Gene

GeneLoc Exon Structure for
SPTBN5
ECgene alternative splicing isoforms for
SPTBN5

Expression for SPTBN5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPTBN5 Gene

mRNA differential expression in normal tissues according to GTEx for SPTBN5 Gene

This gene is overexpressed in Nerve - Tibial (x8.5), Brain - Cerebellum (x5.7), and Brain - Cerebellar Hemisphere (x5.1).

Protein differential expression in normal tissues from HIPED for SPTBN5 Gene

This gene is overexpressed in Adipocyte (33.9), Platelet (12.6), and Breast (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SPTBN5 Gene



NURSA nuclear receptor signaling pathways regulating expression of SPTBN5 Gene:

SPTBN5

SOURCE GeneReport for Unigene cluster for SPTBN5 Gene:

Hs.709819

mRNA Expression by UniProt/SwissProt for SPTBN5 Gene:

Q9NRC6-SPTN5_HUMAN
Tissue specificity: Expressed at very low levels in many tissues, with strongest expression in cerebellum, spinal cord, stomach, pituitary gland, liver, pancreas, salivary gland, kidney, bladder, and heart.
genes like me logo Genes that share expression patterns with SPTBN5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein tissue co-expression partners for SPTBN5 Gene

Orthologs for SPTBN5 Gene

This gene was present in the common ancestor of animals.

Orthologs for SPTBN5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPTBN5 34 35
  • 98.81 (n)
cow
(Bos Taurus)
Mammalia SPTBN5 34 35
  • 81.08 (n)
mouse
(Mus musculus)
Mammalia Sptbn5 34 16
  • 75.87 (n)
rat
(Rattus norvegicus)
Mammalia Sptbn5 34
  • 75.7 (n)
dog
(Canis familiaris)
Mammalia SPTBN5 35
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SPTBN5 35
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SPTBN5 35
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves SPTBN5 34 35
  • 56.26 (n)
lizard
(Anolis carolinensis)
Reptilia SPTBN5 35
  • 43 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sptbn5 34
  • 54.32 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC569585 34
  • 48.14 (n)
SPTBN5 35
  • 33 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta kst 34
  • 47.7 (n)
beta-Spec 35
  • 27 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004440 34
  • 45.69 (n)
worm
(Caenorhabditis elegans)
Secernentea sma-1 34
  • 41.4 (n)
unc-70 35
  • 26 (a)
OneToMany
Species where no ortholog for SPTBN5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SPTBN5 Gene

ENSEMBL:
Gene Tree for SPTBN5 (if available)
TreeFam:
Gene Tree for SPTBN5 (if available)

Paralogs for SPTBN5 Gene

(1) SIMAP similar genes for SPTBN5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPTBN5: view

Variants for SPTBN5 Gene

Sequence variations from dbSNP and Humsavar for SPTBN5 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1008710 -- 41,850,194(-) AGAAA(C/G)GCTCA intron-variant
rs1010640 -- 41,891,234(-) CATTC(A/G)GTACT intron-variant, upstream-variant-2KB
rs1055827 -- 41,848,327(-) GTGGC(C/T)TCCTC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1061354 -- 41,847,968(+) GGCAC(G/T)GTCCC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs11070351 -- 41,865,036(+) ACAGC(A/G)TCTGT intron-variant, nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SPTBN5 Gene

Variant ID Type Subtype PubMed ID
dgv2582n100 CNV gain 25217958
esv2663665 CNV deletion 23128226
nsv1035998 CNV gain 25217958
nsv1038933 CNV gain 25217958
nsv1050892 CNV gain 25217958
nsv1506 CNV insertion 18451855
nsv517631 CNV loss 19592680
nsv9244 CNV gain 18304495
nsv952613 CNV deletion 24416366

Variation tolerance for SPTBN5 Gene

Residual Variation Intolerance Score: 99.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 25.43; 99.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPTBN5 Gene

Human Gene Mutation Database (HGMD)
SPTBN5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPTBN5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPTBN5 Gene

Disorders for SPTBN5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SPTBN5 Gene - From: DISEASES

Disorder Aliases PubMed IDs
macular holes
  • macular hole
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SPTBN5

Genetic Association Database (GAD)
SPTBN5
Human Genome Epidemiology (HuGE) Navigator
SPTBN5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPTBN5
genes like me logo Genes that share disorders with SPTBN5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SPTBN5 Gene

Publications for SPTBN5 Gene

  1. Identification and characterization of beta V spectrin, a mammalian ortholog of Drosophila beta H spectrin. (PMID: 10764729) Stabach P.R. … Morrow J.S. (J. Biol. Chem. 2000) 2 3 4 22 64
  2. The spectrin cytoskeleton influences the surface expression and activation of human transient receptor potential channel 4 channels. (PMID: 18048348) Odell A.F. … Scott J.L. (J. Biol. Chem. 2008) 3 4 22 64
  3. Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals. (PMID: 19851296) Oguri M. … Yamada Y. (Am. J. Hypertens. 2010) 3 46 64
  4. Association of genetic variants with hemorrhagic stroke in Japanese individuals. (PMID: 20198315) Yoshida T. … Yamada Y. (Int. J. Mol. Med. 2010) 3 46 64
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64

Products for SPTBN5 Gene

Sources for SPTBN5 Gene

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