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Aliases for SPRYD7 Gene

Aliases for SPRYD7 Gene

  • SPRY Domain Containing 7 2 3 5
  • Chronic Lymphocytic Leukemia Deletion Region Gene 6 Protein 3 4
  • CLL Deletion Region Gene 6 Protein 3 4
  • C13orf1 3 4
  • CLLD6 3 4
  • Chromosome 13 Open Reading Frame 1 2
  • SPRY Domain-Containing Protein 7 3

External Ids for SPRYD7 Gene

Previous HGNC Symbols for SPRYD7 Gene

  • C13orf1

Previous GeneCards Identifiers for SPRYD7 Gene

  • GC13M050487

Summaries for SPRYD7 Gene

GeneCards Summary for SPRYD7 Gene

SPRYD7 (SPRY Domain Containing 7) is a Protein Coding gene. Diseases associated with SPRYD7 include Chronic Lymphocytic Leukemia.

Gene Wiki entry for SPRYD7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPRYD7 Gene

Genomics for SPRYD7 Gene

Regulatory Elements for SPRYD7 Gene

Enhancers for SPRYD7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G049856 1.2 Ensembl ENCODE 7.8 +137.3 137330 3.5 FOXA2 ATF1 MLX ARID4B SIN3A YY1 FOS MIER2 PPARG KAT8 EBPL SPRYD7 DLEU1 CTAGE10P TRIM13 RNY4P30 KPNA3
GH13G049790 1.1 ENCODE 6.7 +203.6 203582 3.3 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 EBPL SPRYD7 KPNA3 SETDB2 DLEU1 ENSG00000276436 GC13P049698
GH13G049995 1.1 ENCODE 6.4 -1.5 -1541 4.4 CREB3L1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF766 ZNF143 ZNF207 SP5 TRIM13 DLEU1 EBPL SPRYD7 CTAGE10P RNASEH2B MIR3613 KCNRG
GH13G049960 0.3 FANTOM5 11.8 +35.6 35566 0.3 SPRYD7 KCNRG KPNA3 GC13P049955 GC13P049980
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPRYD7 on UCSC Golden Path with GeneCards custom track

Promoters for SPRYD7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000062794 -1338 2601 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF766 ZNF143 ZNF207 SP5 ZHX2

Genomic Location for SPRYD7 Gene

Chromosome:
13
Start:
49,912,702 bp from pter
End:
49,995,962 bp from pter
Size:
83,261 bases
Orientation:
Minus strand

Genomic View for SPRYD7 Gene

Genes around SPRYD7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPRYD7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPRYD7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPRYD7 Gene

Proteins for SPRYD7 Gene

  • Protein details for SPRYD7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5W111-SPRY7_HUMAN
    Recommended name:
    SPRY domain-containing protein 7
    Protein Accession:
    Q5W111
    Secondary Accessions:
    • A8K3G1
    • O60648
    • Q8TBG8
    • Q96T69

    Protein attributes for SPRYD7 Gene

    Size:
    196 amino acids
    Molecular mass:
    21666 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC09363.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for SPRYD7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPRYD7 Gene

Post-translational modifications for SPRYD7 Gene

  • Ubiquitination at Lys85
  • Modification sites at PhosphoSitePlus

Other Protein References for SPRYD7 Gene

No data available for DME Specific Peptides for SPRYD7 Gene

Domains & Families for SPRYD7 Gene

Protein Domains for SPRYD7 Gene

Suggested Antigen Peptide Sequences for SPRYD7 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPRYD7: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SPRYD7 Gene

Function for SPRYD7 Gene

Gene Ontology (GO) - Molecular Function for SPRYD7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with SPRYD7: view
genes like me logo Genes that share phenotypes with SPRYD7: view

Animal Model Products

CRISPR Products

miRNA for SPRYD7 Gene

miRTarBase miRNAs that target SPRYD7

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SPRYD7 Gene

Localization for SPRYD7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPRYD7 gene
Compartment Confidence
cytosol 3
extracellular 2
nucleus 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPRYD7 Gene

Pathways & Interactions for SPRYD7 Gene

SuperPathways for SPRYD7 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPRYD7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPRYD7 Gene

Drugs & Compounds for SPRYD7 Gene

No Compound Related Data Available

Transcripts for SPRYD7 Gene

Unigene Clusters for SPRYD7 Gene

SPRY domain containing 7:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPRYD7 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d
SP1:
SP2: - -
SP3: - - -
SP4: -

Relevant External Links for SPRYD7 Gene

GeneLoc Exon Structure for
SPRYD7
ECgene alternative splicing isoforms for
SPRYD7

Expression for SPRYD7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPRYD7 Gene

Protein differential expression in normal tissues from HIPED for SPRYD7 Gene

This gene is overexpressed in Placenta (13.2) and Bone (13.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SPRYD7 Gene



Protein tissue co-expression partners for SPRYD7 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SPRYD7 Gene:

SPRYD7

SOURCE GeneReport for Unigene cluster for SPRYD7 Gene:

Hs.44235

Evidence on tissue expression from TISSUES for SPRYD7 Gene

  • Nervous system(2.4)
genes like me logo Genes that share expression patterns with SPRYD7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPRYD7 Gene

Orthologs for SPRYD7 Gene

This gene was present in the common ancestor of animals.

Orthologs for SPRYD7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPRYD7 34 35
  • 99.66 (n)
oppossum
(Monodelphis domestica)
Mammalia SPRYD7 35
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPRYD7 34 35
  • 94.2 (n)
cow
(Bos Taurus)
Mammalia SPRYD7 34 35
  • 94.05 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SPRYD7 35
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Spryd7 34 16 35
  • 90.48 (n)
rat
(Rattus norvegicus)
Mammalia Spryd7 34
  • 90.48 (n)
chicken
(Gallus gallus)
Aves SPRYD7 34 35
  • 82.99 (n)
lizard
(Anolis carolinensis)
Reptilia SPRYD7 35
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia spryd7 34
  • 80.28 (n)
Str.11085 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.24473 34
zebrafish
(Danio rerio)
Actinopterygii spryd7b 35
  • 85 (a)
OneToMany
spryd7a 34 35
  • 74.49 (n)
Dr.13478 34
fruit fly
(Drosophila melanogaster)
Insecta CG7785 34 35
  • 53.68 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001349 34
  • 51.66 (n)
worm
(Caenorhabditis elegans)
Secernentea F18H3.1 34 35
  • 54.69 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 50 (a)
OneToOne
Species where no ortholog for SPRYD7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SPRYD7 Gene

ENSEMBL:
Gene Tree for SPRYD7 (if available)
TreeFam:
Gene Tree for SPRYD7 (if available)

Paralogs for SPRYD7 Gene

Pseudogenes.org Pseudogenes for SPRYD7 Gene

genes like me logo Genes that share paralogs with SPRYD7: view

No data available for Paralogs for SPRYD7 Gene

Variants for SPRYD7 Gene

Sequence variations from dbSNP and Humsavar for SPRYD7 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000162391 -- 49,928,017(+) ACTGT(G/T)CATAT intron-variant, nc-transcript-variant, reference, missense
rs1000278009 -- 49,918,519(+) TTCTC(C/T)GCCTC intron-variant
rs1000363571 -- 49,936,528(+) GGGCG(A/C/T)GGCGT upstream-variant-2KB
rs1000470058 -- 49,927,490(+) GACTC(C/T)AAGAA intron-variant
rs1000588049 -- 49,936,707(+) CCCGG(C/T)CTCGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPRYD7 Gene

Variant ID Type Subtype PubMed ID
esv3632059 CNV loss 21293372
nsv561618 CNV loss 21841781

Variation tolerance for SPRYD7 Gene

Residual Variation Intolerance Score: 37% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.03; 0.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPRYD7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPRYD7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPRYD7 Gene

Disorders for SPRYD7 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SPRYD7 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
chronic lymphocytic leukemia
  • cll
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SPRYD7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPRYD7
genes like me logo Genes that share disorders with SPRYD7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SPRYD7 Gene

Publications for SPRYD7 Gene

  1. Cloning and characterization of CLLD6, CLLD7, and CLLD8, novel candidate genes for leukemogenesis at chromosome 13q14, a region commonly deleted in B-cell chronic lymphocytic leukemia. (PMID: 11306461) Mabuchi H. … Croce C.M. (Cancer Res. 2001) 2 3 4 64
  2. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. [Transcription map of the 13q14 region, frequently deleted in B-cell chronic lymphocytic leukemia patients]. (PMID: 11771308) Tiazhelova T.V. … Baranova A.V. (Genetika 2001) 2 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for SPRYD7 Gene

Sources for SPRYD7 Gene

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