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Aliases for SPRYD3 Gene

Aliases for SPRYD3 Gene

  • SPRY Domain Containing 3 2 3 5

External Ids for SPRYD3 Gene

Previous GeneCards Identifiers for SPRYD3 Gene

  • GC12M051746
  • GC12M053458
  • GC12M050501

Summaries for SPRYD3 Gene

GeneCards Summary for SPRYD3 Gene

SPRYD3 (SPRY Domain Containing 3) is a Protein Coding gene. An important paralog of this gene is RANBP9.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPRYD3 Gene

Genomics for SPRYD3 Gene

Regulatory Elements for SPRYD3 Gene

Enhancers for SPRYD3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G052869 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14 +206.1 206095 7.1 CREB3L1 MLX DMAP1 SLC30A9 ZNF143 ZNF263 SP3 NFYC GLIS1 NBN MAP3K12 KRT2 SPRYD3 KRT84 ZNF740 PFDN5 KRT79 KRT4 KRT8 KRT18
GH12G053971 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.9 -910.8 -910823 36.8 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 ZNF740 MAP3K12 ENSG00000258344 LOC100652999 HOXC8 HOXC5 SP1 HOTAIR CBX5 HOXC4
GH12G052941 2 FANTOM5 Ensembl ENCODE dbSUPER 14 +131.8 131810 11.7 MLX CREB3L1 ZFP64 YBX1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SPRYD3 MAP3K12 KRT18 KRT8 KRT71 EIF4B LOC283335 GC12M052900
GH12G052894 2 FANTOM5 Ensembl ENCODE dbSUPER 14 +176.5 176493 16.1 MLX CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 AAAS ZNF740 MAP3K12 KRT18 SP1 SPRYD3 EIF4B LOC100652999 KRT74 KRT78
GH12G052180 1.9 FANTOM5 Ensembl ENCODE dbSUPER 13.9 +891.0 890956 15.1 PKNOX1 SIN3A FEZF1 ZNF2 ZBTB7B ZNF416 FOS ZNF263 SP3 REST KRT80 ZNF740 KRT7 SPRYD3 C12orf80 NR4A1 FIGNL2 ACVRL1 ATG101 GRASP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPRYD3 on UCSC Golden Path with GeneCards custom track

Promoters for SPRYD3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052144 120 1401 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143

Genomic Location for SPRYD3 Gene

Chromosome:
12
Start:
53,064,316 bp from pter
End:
53,079,420 bp from pter
Size:
15,105 bases
Orientation:
Minus strand

Genomic View for SPRYD3 Gene

Genes around SPRYD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPRYD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPRYD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPRYD3 Gene

Proteins for SPRYD3 Gene

  • Protein details for SPRYD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCJ5-SPRY3_HUMAN
    Recommended name:
    SPRY domain-containing protein 3
    Protein Accession:
    Q8NCJ5
    Secondary Accessions:
    • B9EG99
    • Q96SK5

    Protein attributes for SPRYD3 Gene

    Size:
    442 amino acids
    Molecular mass:
    49694 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for SPRYD3 Gene

neXtProt entry for SPRYD3 Gene

Post-translational modifications for SPRYD3 Gene

  • Ubiquitination at Lys14
  • Modification sites at PhosphoSitePlus

Other Protein References for SPRYD3 Gene

No data available for DME Specific Peptides for SPRYD3 Gene

Domains & Families for SPRYD3 Gene

Protein Domains for SPRYD3 Gene

Suggested Antigen Peptide Sequences for SPRYD3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPRYD3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SPRYD3 Gene

Function for SPRYD3 Gene

genes like me logo Genes that share phenotypes with SPRYD3: view

Animal Models for SPRYD3 Gene

MGI Knock Outs for SPRYD3:

Animal Model Products

CRISPR Products

miRNA for SPRYD3 Gene

miRTarBase miRNAs that target SPRYD3

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SPRYD3 Gene

Localization for SPRYD3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPRYD3 gene
Compartment Confidence
cytoskeleton 2
mitochondrion 2
nucleus 2
cytosol 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPRYD3 Gene

Pathways & Interactions for SPRYD3 Gene

SuperPathways for SPRYD3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPRYD3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPRYD3 Gene

Drugs & Compounds for SPRYD3 Gene

No Compound Related Data Available

Transcripts for SPRYD3 Gene

Unigene Clusters for SPRYD3 Gene

SPRY domain containing 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPRYD3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13
SP1: - -
SP2:
SP3:
SP4: -
SP5: -

Relevant External Links for SPRYD3 Gene

GeneLoc Exon Structure for
SPRYD3
ECgene alternative splicing isoforms for
SPRYD3

Expression for SPRYD3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPRYD3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SPRYD3 Gene

This gene is overexpressed in Placenta (20.0), Spleen (17.2), Ovary (10.2), CD4 Tcells (10.0), and CD8 Tcells (9.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SPRYD3 Gene



Protein tissue co-expression partners for SPRYD3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SPRYD3 Gene:

SPRYD3

SOURCE GeneReport for Unigene cluster for SPRYD3 Gene:

Hs.343334

Evidence on tissue expression from TISSUES for SPRYD3 Gene

  • Nervous system(4.8)
genes like me logo Genes that share expression patterns with SPRYD3: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPRYD3 Gene

Orthologs for SPRYD3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SPRYD3 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SPRYD3 34 35
  • 93.97 (n)
cow
(Bos Taurus)
Mammalia SPRYD3 34 35
  • 93.36 (n)
mouse
(Mus musculus)
Mammalia Spryd3 34 16 35
  • 92.99 (n)
rat
(Rattus norvegicus)
Mammalia Spryd3 34
  • 92.99 (n)
chimpanzee
(Pan troglodytes)
Mammalia SPRYD3 34 35
  • 92.01 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SPRYD3 35
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves SPRYD3 34 35
  • 80.33 (n)
lizard
(Anolis carolinensis)
Reptilia SPRYD3 35
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia spryd3 34
  • 75.84 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.30203 34
zebrafish
(Danio rerio)
Actinopterygii spryd3 34 35
  • 71.16 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6236 34
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VID30 35
  • 6 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 42 (a)
OneToOne
Species where no ortholog for SPRYD3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPRYD3 Gene

ENSEMBL:
Gene Tree for SPRYD3 (if available)
TreeFam:
Gene Tree for SPRYD3 (if available)

Paralogs for SPRYD3 Gene

Paralogs for SPRYD3 Gene

genes like me logo Genes that share paralogs with SPRYD3: view

Variants for SPRYD3 Gene

Sequence variations from dbSNP and Humsavar for SPRYD3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000135073 -- 53,065,736(+) AGGGG(A/C)CTGCT utr-variant-3-prime
rs1000326967 -- 53,079,521(+) GGCCC(G/T)GTGCC upstream-variant-2KB
rs1000385419 -- 53,075,903(+) AAGGG(C/G)CAGCA intron-variant
rs1000774987 -- 53,080,812(+) GAATT(A/C)TTGAA upstream-variant-2KB
rs1001211710 -- 53,075,297(+) GACTT(A/G)GAGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPRYD3 Gene

Variant ID Type Subtype PubMed ID
dgv2644n54 CNV loss 21841781
nsv470294 CNV loss 18288195
nsv517066 CNV loss 19592680
nsv712 CNV insertion 18451855
nsv832417 CNV gain 17160897

Variation tolerance for SPRYD3 Gene

Residual Variation Intolerance Score: 15.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.61; 65.41% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPRYD3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPRYD3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPRYD3 Gene

Disorders for SPRYD3 Gene

Relevant External Links for SPRYD3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPRYD3

No disorders were found for SPRYD3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPRYD3 Gene

Publications for SPRYD3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4 64
  2. FBXW7 modulates cellular stress response and metastatic potential through a88HSF1 post-translational modification. (PMID: 25720964) Kourtis N. … Aifantis I. (Nat. Cell Biol. 2015) 3 64
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  4. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SPRYD3 Gene

Sources for SPRYD3 Gene

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