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Aliases for SPRR2C Gene

Aliases for SPRR2C Gene

  • Small Proline-Rich Protein 2C (Pseudogene) 2 3
  • Small Proline-Rich Protein 2C 2

External Ids for SPRR2C Gene

Summaries for SPRR2C Gene

GeneCards Summary for SPRR2C Gene

SPRR2C (Small Proline-Rich Protein 2C (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPRR2C Gene

Genomics for SPRR2C Gene

Genomic Location for SPRR2C Gene

Start:
153,140,118 bp from pter
End:
153,141,493 bp from pter
Size:
1,376 bases
Orientation:
Minus strand

Genomic View for SPRR2C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPRR2C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPRR2C Gene

Regulatory Elements for SPRR2C Gene

Proteins for SPRR2C Gene

Post-translational modifications for SPRR2C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPRR2C Gene

Domains for SPRR2C Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SPRR2C Gene

Function for SPRR2C Gene

Molecular function for SPRR2C Gene

GENATLAS Biochemistry: small proline rich protein 2C,precursor of cornified cell envelope,cornifin,clustered in the epidermal differentiation complex (EDC)

miRNA for SPRR2C Gene

miRTarBase miRNAs that target SPRR2C

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SPRR2C Gene

Localization for SPRR2C Gene

No data available for Gene Ontology (GO) - Cellular Components for SPRR2C Gene

Pathways for SPRR2C Gene

SuperPathways for SPRR2C Gene

No Data Available

Interacting Proteins for SPRR2C Gene

Gene Ontology (GO) - Biological Process for SPRR2C Gene

None

No data available for Pathways by source for SPRR2C Gene

Transcripts for SPRR2C Gene

mRNA/cDNA for SPRR2C Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPRR2C Gene

Small proline-rich protein 2C (pseudogene):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPRR2C Gene

No ASD Table

Relevant External Links for SPRR2C Gene

GeneLoc Exon Structure for
SPRR2C
ECgene alternative splicing isoforms for
SPRR2C

Expression for SPRR2C Gene

mRNA expression in normal human tissues for SPRR2C Gene

mRNA differential expression in normal tissues according to GTEx for SPRR2C Gene

This gene is overexpressed in Esophagus - Mucosa (30.3), Minor Salivary Gland (9.3), and Testis (6.4).

SOURCE GeneReport for Unigene cluster for SPRR2C Gene Hs.2421

genes like me logo Genes that share expressions with SPRR2C: view

Orthologs for SPRR2C Gene

Evolution for SPRR2C Gene

ENSEMBL:
Gene Tree for SPRR2C (if available)
TreeFam:
Gene Tree for SPRR2C (if available)

No data available for Orthologs for SPRR2C Gene

Paralogs for SPRR2C Gene

No data available for Paralogs for SPRR2C Gene

Variants for SPRR2C Gene

Sequence variations from dbSNP and Humsavar for SPRR2C Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2928 -- 153,140,330(-) CAAAA(G/T)GTTTC nc-transcript-variant
rs564211 -- 153,141,601(-) AGATT(A/C)CCTGT upstream-variant-2KB
rs572703 -- 153,142,632(-) gggac(A/G)tatct upstream-variant-2KB
rs1284558 -- 153,142,823(-) cacca(C/T)gatca upstream-variant-2KB
rs2291979 -- 153,140,663(-) ACCTC(C/T)TGTGT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SPRR2C Gene

Variant ID Type Subtype PubMed ID
nsv2921 CNV Insertion 18451855

Relevant External Links for SPRR2C Gene

HapMap Linkage Disequilibrium report
SPRR2C

Disorders for SPRR2C Gene

No disorders were found for SPRR2C Gene.

No data available for UniProtKB/Swiss-Prot for SPRR2C Gene

Publications for SPRR2C Gene

  1. Isolation, characterization, and UV-stimulated expression of two families of genes encoding polypeptides of related structure in human epidermal keratinocytes. (PMID: 3133554) Kartasova T. … van de Putte P. (Mol. Cell. Biol. 1988) 2 3
  2. Molecular characterization and evolution of the SPRR family of keratinocyte differentiation markers encoding small proline-rich proteins. (PMID: 8325635) Gibbs S. … Backendorf C. (Genomics 1993) 2 3
  3. Structural organization and regulation of the small proline-rich family of cornified envelope precursors suggest a role in adaptive barrier function. (PMID: 11279051) Cabral A. … Backendorf C. (J. Biol. Chem. 2001) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Estrogen regulates the expression of the small proline-rich 2 gene family in the mouse uterus. (PMID: 15232223) Hong S.H. … Kim M.K. (Mol. Cells 2004) 3

Products for SPRR2C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPRR2C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPRR2C
    • Block miRNA regulation of SPRR2C using miScript Target Protectors

    Sources for SPRR2C Gene

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