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Aliases for SPRNP1 Gene

Aliases for SPRNP1 Gene

  • Shadow Of Prion Protein Homolog (Zebrafish) Pseudogene 1 2 3

External Ids for SPRNP1 Gene

Previous GeneCards Identifiers for SPRNP1 Gene

  • GC10U901380
  • GC10M128922
  • GC10M135381

Summaries for SPRNP1 Gene

GeneCards Summary for SPRNP1 Gene

SPRNP1 (Shadow Of Prion Protein Homolog (Zebrafish) Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPRNP1 Gene

Genomics for SPRNP1 Gene

Genomic Location for SPRNP1 Gene

Chromosome:
10
Start:
133,566,934 bp from pter
End:
133,569,958 bp from pter
Size:
3,025 bases
Orientation:
Minus strand

Genomic View for SPRNP1 Gene

Genes around SPRNP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPRNP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPRNP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPRNP1 Gene

No data available for Regulatory Elements for SPRNP1 Gene

Proteins for SPRNP1 Gene

Post-translational modifications for SPRNP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPRNP1 Gene

Domains & Families for SPRNP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPRNP1 Gene

Function for SPRNP1 Gene

Phenotypes for SPRNP1 Gene

GenomeRNAi human phenotypes for SPRNP1:
genes like me logo Genes that share phenotypes with SPRNP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPRNP1 Gene

Localization for SPRNP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPRNP1 Gene

Pathways & Interactions for SPRNP1 Gene

SuperPathways for SPRNP1 Gene

No Data Available

Interacting Proteins for SPRNP1 Gene

Gene Ontology (GO) - Biological Process for SPRNP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPRNP1 Gene

Drugs & Compounds for SPRNP1 Gene

No Compound Related Data Available

Transcripts for SPRNP1 Gene

mRNA/cDNA for SPRNP1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:

Unigene Clusters for SPRNP1 Gene

Shadow of prion protein homolog (zebrafish) pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPRNP1 Gene

No ASD Table

Relevant External Links for SPRNP1 Gene

GeneLoc Exon Structure for
SPRNP1
ECgene alternative splicing isoforms for
SPRNP1

Expression for SPRNP1 Gene

mRNA expression in normal human tissues for SPRNP1 Gene

mRNA expression in normal human tissues for SPRNP1 Gene

SOURCE GeneReport for Unigene cluster for SPRNP1 Gene Hs.660426

genes like me logo Genes that share expression patterns with SPRNP1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SPRNP1 Gene

Orthologs for SPRNP1 Gene

No data available for Orthologs and Evolution for SPRNP1 Gene

Paralogs for SPRNP1 Gene

No data available for Paralogs for SPRNP1 Gene

Variants for SPRNP1 Gene

Sequence variations from dbSNP and Humsavar for SPRNP1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs4838777 -- 133,570,327(+) ATTAA(C/G)AAGGA upstream-variant-2KB
rs1063218 -- 133,570,899(-) CTCCC(A/G)CACGC upstream-variant-2KB
rs10909617 -- 133,571,518(+) TTGAG(C/T)AGAGA upstream-variant-2KB
rs138648812 -- 133,571,229(+) AAAAA(-/T)AAAAA upstream-variant-2KB
rs143820108 -- 133,571,537(+) TTTTA(A/G)ATAAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPRNP1 Gene

Variant ID Type Subtype PubMed ID
nsv528260 CNV Loss 19592680
essv9566 CNV CNV 17122850
nsv428243 CNV Gain 18775914
esv2750853 CNV Gain 17911159
nsv470981 CNV Gain 18288195
dgv35e55 CNV Gain 17911159
dgv329e1 CNV Complex 17122850
nsv7631 CNV Loss 18451855
dgv123n27 CNV Gain 19166990
dgv890n71 CNV Gain 21882294
nsv517180 CNV Gain+Loss 19592680
nsv469597 CNV Gain 16826518
dgv893n71 CNV Gain+Loss 21882294
esv33719 CNV Gain 17666407
esv28562 CNV Gain+Loss 19812545
nsv498746 CNV Loss 21111241
dgv181e199 CNV Deletion 23128226
nsv8752 CNV Gain+Loss 18304495
dgv895n71 CNV Gain 21882294
dgv330e1 CNV Complex 17122850
dgv127n27 CNV Gain 19166990
esv2750875 CNV Loss 17911159
dgv36e55 CNV Gain 17911159
dgv896n71 CNV Gain 21882294
nsv832042 CNV Gain 17160897
dgv128n27 CNV Gain 19166990
dgv898n71 CNV Gain 21882294
dgv900n71 CNV Gain 21882294
dgv37e55 CNV Gain 17911159
dgv903n71 CNV Gain 21882294
dgv904n71 CNV Gain 21882294
dgv905n71 CNV Gain 21882294
dgv331e1 CNV Complex 17122850
dgv906n71 CNV Gain 21882294
dgv129n27 CNV Gain 19166990
dgv8n64 CNV Gain 17921354
dgv908n71 CNV Gain 21882294
nsv896424 CNV Gain 21882294
essv9488 CNV CNV 17122850
nsv482151 CNV Gain 20164927
esv35157 CNV Gain 17911159
dgv909n71 CNV Loss 21882294
nsv896428 CNV Gain 21882294
esv2419070 CNV Deletion 18987734
esv1354504 CNV Deletion 17803354

Relevant External Links for SPRNP1 Gene

HapMap Linkage Disequilibrium report
SPRNP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPRNP1 Gene

Disorders for SPRNP1 Gene

Relevant External Links for SPRNP1

Human Genome Epidemiology (HuGE) Navigator
SPRNP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPRNP1

No disorders were found for SPRNP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPRNP1 Gene

Publications for SPRNP1 Gene

  1. Genomic assessment of the evolution of the prion protein gene family in vertebrates. (PMID: 20206252) Harrison P.M. … Kumar M. (Genomics 2010) 2 3 67
  2. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SPRNP1 Gene

Sources for SPRNP1 Gene

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