SPP2 Gene
protein-coding GIFtS : 48
GCID: GC02 P234975
secreted phosphoprotein 2, 24kDa (Previous names: secreted phosphoprotein 2, 24kD )
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Aliasesfor SPP2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Secreted Phosphoprotein 2, 24kDa 1 2 Secreted Phosphoprotein 242 SPP241 2 3 Spp-243 Secreted Phosphoprotein 2, 24kD1 Secreted Phosphoprotein 23 SPP-242
Export aliases for SPP2 gene to outside databases Previous GC identifers: GC02P232967 GC02P233641 GC02P235246 GC02P234741 GC02P234624 GC02P226759
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Summariesfor SPP2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for SPP2 : This gene encodes a secreted phosphoprotein that is a member of the cystatin superfamily. (provided by RefSeq, Oct 2008) UniProtKB/Swiss-Prot: SPP24_HUMAN, Q13103 Function : Could coordinate an aspect of bone turnover (By similarity)
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Genomic Viewsfor SPP2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_005120.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SPP2 gene promoter: E2F-3a E2F-4 E2F-5 AML1a GCNF E2F-2 E2F-1 E2F GCNF-1 GCNF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for SPP2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SPP2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q37.1 Ensembl cytogenetic band: 2q37.1 HGNC cytogenetic band: 2q37.1 SPP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P234975: view genomic region
(about GC identifiers )
Start:
234,959,323 bp from pter
End:
234,985,778 bp from pter
Size:
26,456 bases
Orientation:
plus strand
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Proteinsfor SPP2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SPP24_HUMAN, Q13103 (See
protein sequence )Recommended Name: Secreted phosphoprotein 24 precursor Size : 211 amino acids; 24338 Da
Subcellular location : Secreted
Developmental stage : Found in fetal liver and kidney
Secondary accessions : A4QMV3 Q3B892 Q546M5Explore the universe of human proteins at neXtProt for SPP2: NX_Q13103 Post-translational modifications:
Phosphorylation sites are present in the extracellular medium1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q13103 SPP2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_008875.1 ENSEMBL proteins: ENSP00000362466 ENSP00000168148 ENSP00000417036 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0043234 protein complex
IEA --
SPP2 for ontologies About GeneDecksing SPP2 Antibody Products: Assay Products for SPP2:
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Protein
Domains / Familiesfor SPP2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SPP2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q13103 ProtoNet protein and cluster: Q13103
1 Blocks protein family : IPB010892 Secreted phosphoprotein 24 UniProtKB/Swiss-Prot: SPP24_HUMAN, Q13103 Similarity : Belongs to the SPP2 family
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Functionfor SPP2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SPP24_HUMAN, Q13103 Function : Could coordinate an aspect of bone turnover (By similarity)
Genatlas biochemistry entry for SPP2 : secreted phosphoprotein2,24kDa,expressed in bone,bovine spp24 homolog Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPP2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPP2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SPP2 (NM_006944 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SPP2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPP2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPP2
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004866 endopeptidase inhibitor activity
TAS 7814406
SPP2 for ontologies About GeneDecksing
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Pathways & Interactionsfor SPP2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SPP2 Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
SPP2 for ontologies About GeneDecksing
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Drugs & Compoundsfor SPP2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SPP2 Search CenterWatch for drugs/clinical trials and news about SPP2 / SPP24
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Transcriptsfor SPP2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SPP2 gene: NM_006944.2 Unigene Cluster for SPP2:
Secreted phosphoprotein 2, 24kDa Hs.444488 [show with all ESTs ] Unigene Representative Sequence: NM_006944 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000373368 (uc010fyl.1 ) ENST00000168148 (uc002vvk.1 ) ENST00000425558 ENST00000492481 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPP2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPP2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SPP2 (NM_006944 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SPP2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPP2
Additional cDNA sequence: AJ308099.1 BC069401.1 BC106705.1 BC112438.1 BC113972.1 U20530.1
4 DOTS entries : DT.453598 DT.92417474
DT.92417475 DT.91943145 24/31 AceView cDNA sequences (see all 31 ):
AJ308099 BX405937 BX097970 AV718912 CR607621 N74450 BX496642 AV656125 U20530 NM_006944 CB164241 AW119013 AV645964 AW340137 CB163851 BC069401 N54053 AI005085 R29227 AI221684 AI032584 W03162 BE971485 H59135 GeneLoc Exon Structure
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Expression for SPP2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SPP2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CCACGGTGGT
About this image SPP2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See SPP2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SPP2 SOURCE GeneReport for Unigene cluster: Hs.444488 UniProtKB/Swiss-Prot: SPP24_HUMAN, Q13103 Tissue specificity : Detected in liver and plasma SABiosciences Custom PCR Arrays for SPP2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SPP2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SPP2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SPP2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SPP2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPP2
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Orthologsfor SPP2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for SPP2 gene from 3/8 species (see all 8 ) About this table
ENSEMBL Gene Tree for SPP2 (if available)TreeFam Gene Tree for SPP2 (if available)
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Paralogsfor SPP2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor SPP2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SPP2 (234959323 - 234985778 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for SPP2 2 CNVs : 32398 90343 Human Gene Mutation Database (HGMD) : SPP2 SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor SPP2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SPP2 for disorders About GeneDecksing
OMIM gene information: 602637
OMIM disorders : --1 disease for SPP2 : About MalaCards osteoporosis Human Genome Epidemiology (HuGE) Navigator: SPP2 (1 document)Export disorders for SPP2 gene to outside databases
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Publicationsfor SPP2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SPP2 gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with SPP2) Utopia : connect your pdf to the dynamic world of online information
Characterization of the human secreted phosphoprotein 24 gene (SPP2) and comparison of the protein sequence in nine species. (PubMed id 15062857) 1 , 2 , 9 Bennett C.S....Dalgleish R. (2004) Assignment of secreted phosphoprotein 24 (SPP2) to human chromosome band 2q37-->qter by in situ hybridization. (PubMed id 9533032) 1 , 3, 9 Swallow J.E....Dalgleish R. (1997) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 1 , 2 Hillier L.W....Wilson R.K. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Bone morphogenetic protein-2 activity is regulated by secreted phosphoprotein-24 kd, an extracellular pseudoreceptor, the gene for which maps to a region of the human genome important for bone quality. (PubMed id 19375587) 1 , 9 Brochmann E.J....Murray S.S. (2009) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) An integration of genome-wide association study and g ene expression profiling to prioritize the discovery of novel susceptibility Lo ci for osteoporosis-related traits. (PubMed id 20548944) 1 Hsu Y.H....Kiel D.P. (2010) Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061) 1 Trynka G....Wijmenga C. (2009) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 2 Aoki H.... Hino O. (2000)
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External Searches for SPP2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SPP2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SPP2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SPP2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SPP2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SPP2 gene: Search GeneIP for patents involving SPP2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SPP2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SPP2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SPP2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SPP2 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SPP2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPP2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPP2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SPP2 OriGene Custom Protein Services for SPP2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SPP2 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SPP2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SPP2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SPP2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SPP2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SPP2
Search Tocris compounds for SPP2
SPP2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPP2
Search ThermoFisher Antibodies for SPP2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPP2
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Aliases for SPP2
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