SPNS2 Gene
protein-coding GIFtS : 40
GCID: GC17 P004349
spinster homolog 2 (Drosophila)
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Aliasesfor SPNS2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Spinster Homolog 2 (Drosophila) 1 2 Protein Spinster Homolog 22
Export aliases for SPNS2 gene to outside databases
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Summariesfor SPNS2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: SPNS2_HUMAN, Q8IVW8 Function : Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate(S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration
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Genomic Viewsfor SPNS2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010718.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SPNS2 gene promoter: ER-alpha RP58 Pax-5 GATA-1 AREB6 FAC1 ARP-1 c-Myb Zic3 Other transcription factors Search SABiosciences Chromatin IP Primers for SPNS2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SPNS2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17p13.2 Ensembl cytogenetic band: 17p13.2 HGNC cytogenetic band: 17p13.2 SPNS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P004349: view genomic region
(about GC identifiers )
Start:
4,402,129 bp from pter
End:
4,443,228 bp from pter
Size:
41,100 bases
Orientation:
plus strand
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Proteinsfor SPNS2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SPNS2_HUMAN, Q8IVW8 (See
protein sequence )Recommended Name: Protein spinster homolog 2 Size : 549 amino acids; 58044 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : B9A1T3Explore the universe of human proteins at neXtProt for SPNS2: NX_Q8IVW8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8IVW8 SPNS2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001118230.1 ENSEMBL proteins: ENSP00000333292 ENSP00000461410 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
SPNS2 for ontologies About GeneDecksing SPNS2 Antibody Products: Assay Products for SPNS2:
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Protein
Domains / Familiesfor SPNS2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SPNS2 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IVW8 ProtoNet protein and cluster: Q8IVW8
UniProtKB/Swiss-Prot: SPNS2_HUMAN, Q8IVW8 Similarity : Belongs to the major facilitator (TC 2.A.1) superfamily. Spinster (TC 2.A.1.49) family
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Functionfor SPNS2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SPNS2_HUMAN, Q8IVW8 Function : Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate(S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPNS2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPNS2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SPNS2 (NM_001124758 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SPNS2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPNS2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPNS2
Animal Models: Mouse knock-outs for SPNS2: Spns2 tm1b(KOMP)Wtsi Spns2 tm1.2Nmoc 10 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Spns2) :
SPNS2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor SPNS2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SPNS2 Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006869 lipid transport
IEA -- GO:0055085 transmembrane transport
IEA --
SPNS2 for ontologies About GeneDecksing
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Drugs & Compoundsfor SPNS2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SPNS2 Search CenterWatch for drugs/clinical trials and news about SPNS2
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Transcriptsfor SPNS2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SPNS2 gene: NM_001124758.1 Unigene Cluster for SPNS2:
Spinster homolog 2 (Drosophila) Hs.22824 [show with all ESTs ] Unigene Representative Sequence: NM_001124758 8 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000329078 (uc002fxx.2 ) ENST00000571386 ENST00000576635 ENST00000571668 ENST00000573106 ENST00000573990 ENST00000570641 ENST00000570979 (uc002fxy.2 )Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPNS2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPNS2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SPNS2 (NM_001124758 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SPNS2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPNS2
Additional cDNA sequence: AB441165.1 BC041772.1 BC065221.1
16 DOTS entries : DT.100798032 DT.100798044
DT.40231828 DT.95367109 DT.100798034 DT.100728624 DT.100798037 DT.100798038 DT.455190 DT.95153081 DT.95293132 DT.100717857 DT.100798040 DT.121003724 DT.95373349 DT.97853605 24/116 AceView cDNA sequences (see all 116 ):
AI268088 BM727337 AI183511 AW055312 BF111023 BX096396 AI184425 BE047248 CR602862 BM857149 AI355796 BE042416 AW089043 AI913186 AW450188 BM679233 AI124640 AW298213 BM670496 AA535318 AI222569 AW028876 AI244723 AI560219 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SPNS2 (see all 7 ) About this scheme ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c · 7d · 7e SP1 :       -   -       -   -   -               SP2 :       -   -                         SP3 :       -   -       -   -   -               SP4 :       -   -           -               SP5 :                   -              
ECgene alternative splicing isoforms for SPNS2
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Expression for SPNS2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SPNS2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CACACACCAG
About this image SPNS2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See SPNS2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SPNS2 SOURCE GeneReport for Unigene cluster: Hs.22824 SABiosciences Custom PCR Arrays for SPNS2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SPNS2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat SPNS2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SPNS2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SPNS2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPNS2
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Orthologsfor SPNS2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for SPNS2 gene from 7/24 species (see all 24 ) About this table
ENSEMBL Gene Tree for SPNS2 (if available)TreeFam Gene Tree for SPNS2 (if available)
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Paralogsfor SPNS2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SPNS2 gene SPNS3 2 SPNS1 2 2 SIMAP similar genes for SPNS2 using alignment to 2 protein entries: SPNS2_HUMAN (see all proteins ):SPNS1 SPNS3
SPNS2 for paralogs About GeneDecksing
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Genomic Variantsfor SPNS2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SPNS2 (4402129 - 4443228 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for SPNS2 1 CNV : 4984
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SPNS2
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Disorders
/ Diseasesfor SPNS2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SPNS2 for disorders About MalaCards
SPNS2 for disorders About GeneDecksing
OMIM gene information: 612584
OMIM disorders : --Export disorders for SPNS2 gene to outside databases
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Publicationsfor SPNS2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SPNS2 gene integrated from 9 sources : (articles sorted by number of sources associating them with SPNS2) Utopia : connect your pdf to the dynamic world of online information
The sphingolipid transporter spns2 functions in migration of zebrafish myocardial precursors. (PubMed id 19074308) 1 , 2 Kawahara A....Mochizuki N. (2009) HSpin1, a transmembrane protein interacting with Bcl-2/Bcl-xL, induces a caspase-independent autophagic cell death. (PubMed id 12815463) 1 , 3 Yanagisawa H.... Yamamoto D. (2003) The sphingosine 1-phosphate transporter, SPNS2, funct ions as a transporter of the phosphorylated form of the immunomodulating agent FTY720. (PubMed id 21084291) 1 Hisano Y....Nishi T. (2011) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for SPNS2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SPNS2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SPNS2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SPNS2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SPNS2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SPNS2 gene: Search GeneIP for patents involving SPNS2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SPNS2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SPNS2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SPNS2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SPNS2 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SPNS2 OriGene 3'-UTR Clone for SPNS2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPNS2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPNS2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SPNS2 OriGene Custom Protein Services for SPNS2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SPNS2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SPNS2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SPNS2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SPNS2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SPNS2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SPNS2
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SPNS2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPNS2
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPNS2
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Aliases for SPNS2
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