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SPINT3 Gene

protein-coding   GIFtS: 38
GCID: GC20M044141

Serine Peptidase Inhibitor, Kunitz Type, 3

(Previous names: serine protease inhibitor, Kunitz type, 3)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Serine Peptidase Inhibitor, Kunitz Type, 31 2
Serine Protease Inhibitor, Kunitz Type, 31 2
HKIB92 3
Kunitz-Type Protease Inhibitor 32
Serine Protease Inhibitor Kunitz Type 32

External Ids:    HGNC: 112481   Entrez Gene: 108162   Ensembl: ENSG000001014467   OMIM: 6139415   UniProtKB: P492233   

Export aliases for SPINT3 gene to outside databases

Previous GC identifers: GC20M043869 GC20M043829 GC20M044779 GC20M044826 GC20M043574 GC20U900207 GC20M040882


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SPINT3 Gene:
SPINT3 (serine peptidase inhibitor, Kunitz type, 3) is a protein-coding gene. GO annotations related to this gene include serine-type endopeptidase inhibitor activity. An important paralog of this gene is WFIKKN2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000020.10  NC_018931.2  NT_011362.11  
Regulatory elements:
   Regulatory transcription factor binding sites in the SPINT3 gene promoter:
         FAC1   RFX1   FOXJ2 (long isoform)   Nkx2-2   FOXJ2   Nkx2-5   GATA-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for SPINT3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPINT3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20q12-q13.1   Ensembl cytogenetic band:  20q13.12   HGNC cytogenetic band: 20q12-q13.2

SPINT3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPINT3 gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20M044141:  view genomic region     (about GC identifiers)

Start:
44,141,101 bp from pter      End:
44,144,264 bp from pter
Size:
3,164 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SPIT3_HUMAN, P49223 (See protein sequence)
Recommended Name: Kunitz-type protease inhibitor 3 precursor  
Size: 89 amino acids; 10252 Da
Secondary accessions: A6NCQ6 Q6UDR8 Q96KK2

Explore the universe of human proteins at neXtProt for SPINT3: NX_P49223

Explore proteomics data for SPINT3 at MOPED


See SPINT3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_006643.1  
ENSEMBL proteins: 
 ENSP00000217428  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR002223 Prot_inh_Kunz-m
 IPR020901 Prtase_inh_Kunz-CS

Graphical View of Domain Structure for InterPro Entry P49223

ProtoNet protein and cluster: P49223

1 Blocks protein domain: IPB002223 Pancreatic trypsin inhibitor (Kunitz)

UniProtKB/Swiss-Prot: SPIT3_HUMAN, P49223
Similarity: Contains 1 BPTI/Kunitz inhibitor domain


Find genes that share domains with SPINT3           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004867serine-type endopeptidase inhibitor activity IEA--
     
Find genes that share ontologies with SPINT3           About GenesLikeMe


Phenotypes:
     1 GenomeRNAi human phenotype for SPINT3:
 Increased S DNA content, incre 

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
SPIT3_HUMAN, P49223: Secreted (Probable)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular4

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

Find genes that share ontologies with SPINT3           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SPINT3
Interactions:

    Search GeneGlobe Interaction Network for SPINT3

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for SPINT3 (ENSP000002174284) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
TAF10ENSP000002994244STRING: ENSP00000299424
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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  Browse compounds at ApexBio 

Browse Tocris compounds for SPINT3 (SPIT3)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for SPINT3 gene: 
NM_006652.1  

Unigene Cluster for SPINT3:

Serine peptidase inhibitor, Kunitz type, 3
Hs.370724  [show with all ESTs]
Unigene Representative Sequence: NM_006652
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000217428(uc010ghg.1)
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Additional mRNA sequence: AY372172.2 

1 DOTS entry:

DT.40307068 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SPINT3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GATTCGGGAT
SPINT3 Expression
About this image

SPINT3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SPINT3 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.370724
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for SPINT3 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Spint35 serine peptidase inhibitor, Kunitz type, 3   --   2 (85.20 cM) 164569695 
lizard
(Anolis carolinensis)
Reptilia SPINT36
serine peptidase inhibitor, Kunitz type, 3
3(a)
1 ↔ 1
GL344343.1(452-3492)
zebrafish
(Danio rerio)
Actinopterygii wu:fb59d016
wu:fb59d01
11(a)
many ↔ many
10(2614096-2622395) ENSDARG00000089361
worm
(Caenorhabditis elegans)
Secernentea mec-96
F22E12.16
(see all 4)
Protein F22E12.1 (F22E12.1) mRNA, complete cds
(see all 4)
3(a)
3(a)
(see all 4)
many ↔ many
many ↔ many
(see all 4)
V(9907632-9915087) WBGene00003173
V(10453866-10457347) WBGene00009058


ENSEMBL Gene Tree for SPINT3 (if available)
TreeFam Gene Tree for SPINT3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for SPINT3 gene
WFIKKN22  AMBP2  TFPI22  WFIKKN12  TFPI2  
14 SIMAP similar genes for SPINT3 using alignment to 1 protein entry:     SPIT3_HUMAN:
WFIKKN2    ITIL    COL6A3    EPPIN    TFPI    COL28A1
SPINT2    TFPI2    AMBP    PAPLN    WFDC8    APLP2
APP    SPINT1

Find genes that share paralogs with SPINT3           About GenesLikeMe


1 Pseudogenes.org Pseudogene for SPINT3
PGOHUM00000261993


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for SPINT3 (see all 122)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 20 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs48129071,2
C,F,A--44140692(+) CAGGAC/TGGTCT 1 -- int12Minor allele frequency- T:0.50NA 4
rs600019611,2
C,F--44140758(+) TTACAG/CGTGTG 1 -- int11Minor allele frequency- C:0.50WA 2
rs711818311,2
C--44140787(+) TTTTT-/TTAATTA 1 -- int11Minor allele frequency- TT:0.00NA 2
rs1119243221,2
F--44140912(+) CCCCTC/TCTTGT 1 -- int11Minor allele frequency- T:0.50CSA 2
rs1471188291,2
--44140915(+) CTCCTC/TGTCCA 1 -- int10--------
rs733059491,2
C,F--44140947(+) TACCCG/AAATTT 1 -- int12Minor allele frequency- A:0.12WA 120
rs787760481,2
C,F--44140986(+) CCTTTA/CTCTCC 1 -- int11Minor allele frequency- C:0.08EA 120
rs1908833071,2
--44140988(+) TTTATC/TTCCCA 1 -- int10--------
rs786266411,2
C,F--44140989(+) TTATCT/CCCCAG 1 -- int11Minor allele frequency- C:0.08EA 120
rs1385171741,2
--44141010(+) AGTAAC/TTCATA 1 -- int10--------

HapMap Linkage Disequilibrium report for SPINT3 (44141101 - 44144264 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for SPINT3: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing SPINT3
DNA2.0 Custom Variant and Variant Library Synthesis for SPINT3

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 613941    OMIM disorders: --


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Genetic Association Database (GAD): SPINT3

Export disorders for SPINT3 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SPINT3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with SPINT3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Three genes expressing Kunitz domains in the epididymis are related to genes of WFDC-type protease inhibitors and semen coagulum proteins in spite of lacking similarity between their protein products. (PubMed id 21988899)1, 3 Clauss A....Lundwall A.8. (BMC Biochem. 2011)
  2. Voxelwise genome-wide association study (vGWAS). (PubMed id 20171287)1, 4 Stein J.L....Thompson P. (Neuroimage 2010)
  3. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (Nature 2001)
  4. A locus on chromosome 20 encompassing genes that are highly expressed in the epididymis. (PubMed id 17589793)1 Lundwall A. (Asian J. Androl. 2007)
  5. Novel subunits of the TATA binding protein free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one- dimensional gel electrophoresis. (PubMed id 12601814)1 Cavusoglu N.... van Dorsselaer A. (Proteomics 2003)
  6. A high-resolution 6.0-megabase transcript map of the type 2 diabetes susceptibility region on human chromosome 20. (PubMed id 11549316)1 Fossey S.C....Bowden D.W. (Genomics 2001)
  7. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 10816 HGNC: 11248 Ensembl:ENSG00000101446 euGenes: HUgn10816 ECgene: SPINT3
H-InvDB: SPINT3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SPINT3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SPINT3 gene:
Search GeneIP for patents involving SPINT3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Browse ESI BIO Cell Lines and PureStem Progenitors for SPINT3
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 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPINT3
 Browse SwitchGear 3'UTR luciferase reporter plasmids for SPINT3
 Browse SwitchGear Promoter luciferase reporter plasmids for SPINT3
 Search ThermoFisher Antibodies for SPINT3
 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SPINT3
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SPINT3
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for SPINT3
 Search LSBio for Antibodies for SPINT3
Customized transgenic rodents for:
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 Browse compounds at ApexBio
 Search Addgene for plasmids for SPINT3
  Search eBioscience for proteins for SPINT3
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  eBioscience FlowRNA Probe Sets
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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