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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SPINK13 Gene

protein-coding   GIFtS: 37
GCID: GC05P147648

serine peptidase inhibitor, Kazal type 13 (putative)
 Explore 2 diseases affiliated with
SPINK13 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for SPINK13    

Aliases
for SPINK13 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Serine Peptidase Inhibitor, Kazal Type 13 (Putative)1 2     Serine Protease Inhibitor Kazal-Type 5-Like 32 3
HBVDNAPTP11 2 3     MGC1492601
SPINK5L31 2 3     Hepatitis B Virus DNA Polymerase Transactivated Human Serine Protease Inhibitor2
HESPINTOR1 2     Serine Protease Inhibitor Kazal-Type 132
LiESP61 2     Hespintor3
Hepatitis B Virus DNA Polymerase Transactivated Serine Protease Inhibitor2 3     

External Ids:    HGNC: 272001   Entrez Gene: 1532182   Ensembl: ENSG000002145107   UniProtKB: Q1W4C93   

Export aliases for SPINK13 gene to outside databases

Previous GC identifer: GC05P142795


Summaries
for SPINK13 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: ISK13_HUMAN, Q1W4C9
Function: May be a serine protease inhibitor (By similarity)




Genomic Views
for SPINK13 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_029289.11  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for SPINK13
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for SPINK13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SPINK13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q32   Ensembl cytogenetic band:  5q32   HGNC cytogenetic band: 5q32

SPINK13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPINK13 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P147648:  view genomic region     (about GC identifiers)

Start:
 147,647,743 bp from pter      End:
 147,665,817 bp from pter
Size:
 18,075 bases      Orientation:
 plus strand

Proteins
for SPINK13 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: ISK13_HUMAN, Q1W4C9 (See protein sequence)
Recommended Name: Serine protease inhibitor Kazal-type 13 precursor  
Size: 94 amino acids; 11051 Da
Subcellular location: Secreted (Potential)
Secondary accessions: A1A4Y2
Alternative splicing: 2 isoforms:  Q1W4C9-1   Q1W4C9-2   

Explore the universe of human proteins at neXtProt for SPINK13: NX_Q1W4C9

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q1W4C9

    • SPINK13 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001035218.1  
    ENSEMBL proteins: 
     ENSP00000421048   ENSP00000426279   ENSP00000381468  

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    Uscn Proteins for SPINK13

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--


    SPINK13 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for SPINK13 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    SPINK13 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR002350 Prot_inh_Kazal

    Graphical View of Domain Structure for InterPro Entry Q1W4C9

    ProtoNet protein and cluster: Q1W4C9

    UniProtKB/Swiss-Prot: ISK13_HUMAN, Q1W4C9
    Similarity: Contains 1 Kazal-like domain


    Function
    for SPINK13 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: ISK13_HUMAN, Q1W4C9
    Function: May be a serine protease inhibitor (By similarity)

    miRNA
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    In Situ Assay
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004867serine-type endopeptidase inhibitor activity IEA--


    SPINK13 for ontologies           About GeneDecksing



    Pathways & Interactions
    for SPINK13 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SPINK13

    Drugs & Compounds
    for SPINK13 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for SPINK13
    Search CenterWatch for drugs/clinical trials and news about SPINK13 / ISK13 

    Transcripts
    for SPINK13 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section
    REFSEQ mRNAs for SPINK13 gene: 
    NM_001040129.2  

    Unigene Cluster for SPINK13:

    Serine peptidase inhibitor, Kazal type 13 (putative)
    Hs.483771  [show with all ESTs]
    Unigene Representative Sequence: AK001520
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000512953(uc003lpc.3) ENST00000511106(uc010jgt.3) ENST00000398450


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    Inhib. RNA
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    Primer
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    Additional cDNA sequence: 

    AK001520.1 BC128163.1 BC128164.1 DQ438947.1 EF108324.1 EF426754.1 

    3 DOTS entries:

    DT.405432  DT.92414407  DT.99986102 

    4 AceView cDNA sequences:

    AU129688 AK001520 AU151764 AI024610 

    GeneLoc Exon Structure


    Expression
    for SPINK13 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SPINK13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGGCTTTCTC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    SPINK13 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeInner Nuclear LayerAII Amacrine CellsAmacrine, Retina
    EyeInner Nuclear LayerMature Horizontal CellsHorizontal, Retina
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See SPINK13 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SPINK13

    SOURCE GeneReport for Unigene cluster: Hs.483771
        SABiosciences Custom PCR Arrays for SPINK13
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    In Situ
    Assay Products:     
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    Orthologs
    for SPINK13 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of human and mouse.

    Orthologs for SPINK13 gene from 1/3 species (see all 3)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Spink131 , 5 serine peptidase inhibitor, Kazal type 131, 5 70.45(n)1
    55.68(a)1    		   18 (35.37 cM)5
    1000384171  NM_001168423.21  NP_001161895.11 
     626075405 


    ENSEMBL Gene Tree for SPINK13 (if available)
    TreeFam Gene Tree for SPINK13 (if available) 

    Paralogs
    for SPINK13 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for SPINK13 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/388 NCBI SNPs in SPINK13 are shown (see all 388)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 5 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1502786461,2
    		--147646502(+) AGGTG-/TTTTTT 1 -- us2k10--------
    rs1894879851,2
    		--147646593(+) CAACCA/GAATAA 1 -- us2k10--------
    rs1931485281,2
    		--147646610(+) GATGGA/GTGGAC 1 -- us2k10--------
    rs2019032971,2
    		--147646612(+) GGGTG-/TCGACTA 1 -- us2k10--------
    rs1998397761,2
    		--147646616(+) TGGAC-/TACTTT 1 -- us2k10--------
    rs1478683621,2
    		--147646635(+) TTATAC/TCTATT 1 -- us2k10--------
    rs119554761,2
    		C,H--147646751(+) ATATTC/TTAATA 1 -- us2k14Minor allele frequency- T:0.00NS EA 376
    rs68952421,2
    		C,F,A,H,--147646834(+) GGGGTA/CCTTTT 1 -- us2k14Minor allele frequency- C:0.03NS WA CSA 126
    rs1443703861,2
    		--147646834(+) GGGGT-/ACTTTTT 1 -- us2k10--------
    rs68732621,2
    		C,H--147646870(+) TACCAG/AAAAGG 1 -- us2k15Minor allele frequency- A:0.00NS EA NA 412

    HapMap Linkage Disequilibrium report for SPINK13 (147647743 - 147665817 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for SPINK13: --

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    Disorders / Diseases
    for SPINK13 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    SPINK13 for disorders           About GeneDecksing

    2 diseases for SPINK13:    About MalaCards
    hepatitis b    hepatitis


    Export disorders for SPINK13 gene to outside databases

    Publications
    for SPINK13 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SPINK13 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SPINK13)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    2. Transcriptome analysis of a cDNA library from adult human epididymis. (PubMed id 18390568)1 Li J.Y.... Zhang Y.L. (2008)
    3. A genomic analysis of rat proteases and protease inhibitors. (PubMed id 15060002)1 Puente X.S. and Lopez-Otin C. (2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    External Searches for SPINK13 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing SPINK13 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 153218 HGNC: 27200 AceView: SPINK5L3 Ensembl:ENSG00000214510 euGenes: HUgn153218
    ECgene: SPINK13 H-InvDB: SPINK13

    Other Databases showing SPINK13 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing SPINK13 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SPINK13 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for SPINK13 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for SPINK13 gene:
    Search GeneIP for patents involving SPINK13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

     
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