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Aliases & Descriptions for SPI1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases OF 1 , 2 PU.1 1 , 2 SFPI1 1 , 2 , 5 SPI-1 1 , 2 SPI-A 1 , 2
Descriptions 31 kDa transforming protein 2 31 kDa-transforming protein 3 SPI-1 proto-oncogene 2 hematopoietic transcription factor PU.1 2 spleen focus forming virus (SFFV) proviral integration oncogene spi1 2 spleen focus forming virus proviral integration oncogene spi1 1
Search outside databases for aliases for SPI1 genePrevious GC identifers: GC11M049316 GC11M048254 GC11M047408 GC11M047340
Summaries for SPI1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for SPI1 : This gene encodes an ETS-domain transcription factor that activates gene expression during myeloidand B-lymphoid cell development. The nuclear protein binds to a purine-rich sequence known as thePU-box found near the promoters of target genes, and regulates their expression in coordinationwith other transcription factors and cofactors. The protein can also regulate alternative splicingof target genes. Multiple transcript variants encoding different isoforms have been found for thisgene. [provided by RefSeq] UniProtKB/Swiss-Prot: SPI1_HUMAN, P17947 Function : Binds to the PU-box, a purine-rich DNA sequence (5'-GAGGAA-3') that can act as alymphoid-specific enhancer. This protein is a transcriptional activator that may be specificallyinvolved in the differentiation or activation of macrophages or B-cells. Also binds RNA and maymodulate pre-mRNA splicing (By similarity)
Gene Wiki entry for SPI1
Genomic Location for SPI1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SPI1 gene Entrez Gene cytogenetic band: 11p11.2 Ensembl cytogenetic band: 11p11.2 HGNC cytogenetic band: 11p12-p11.22 SPI1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M047332:
(about GC identifiers )
Start:
47,332,985 bp from pter
End:
47,356,703 bp from pter
Size:
23,719 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for SPI1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SPI1_HUMAN, P17947 (See
protein sequence )Recommended Name: Transcription factor PU.1 Size : 270 amino acids; 31083 Da
Subunit : Binds DNA as a monomer. Interacts with RUNX1 and SPIB. Interacts with CEBPD and NONO (Bysimilarity)
Subcellular location : Nucleus
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001074016.1 NP_003111.2 ENSEMBL proteins: ENSP00000367799 ENSP00000227163 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table Antibodies for SPI1: Assays for SPI1:
Protein
Domains/ Families for SPI1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P17947 ProtoNet protein and cluster: P17947
UniProtKB/Swiss-Prot: SPI1_HUMAN, P17947 Similarity : Belongs to the ETS familySimilarity : Contains 1 ETS DNA-binding domain
Gene Function for SPI1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003120 Applied Biosystems Silencer ® siRNAs for SPI1 Sigma-Aldrich siRNA for SPI1 Sigma-Aldrich shRNA for SPI1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001080547                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001080547                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001080547  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001080547 UniProtKB/Swiss-Prot: SPI1_HUMAN, P17947 Function : Binds to the PU-box, a purine-rich DNA sequence (5'-GAGGAA-3') that can act as alymphoid-specific enhancer. This protein is a transcriptional activator that may be specificallyinvolved in the differentiation or activation of macrophages or B-cells. Also binds RNA and maymodulate pre-mRNA splicing (By similarity) Induction : Highly expressed in both FV-P and FV-A-induced erythro-leukemia cell lines that haveundergone rearrangements of the Spi-1 gene due to the insertion of SFFV
Genatlas biochemistry entry for SPI1 :spleen focus forming virus (SFFV) proviral integration oncogene spi1,Pu-1 homolog,expressed invarious hemapoietic cell lines,required for the development of both myeloid and lymphoid lineages
15/16 MGI mutant phenotypes (inferred from 16 alleles ) (MGI details for Sfpi1) (see all 16
):4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for SPI1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for SPI1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for SPI1 5/119 Interacting proteins for SPI1 (ENSP00000367799 3 ) via UniProtKB, MINT, and/or STRING (see all 119
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for SPI1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SPI1 3 Novoseek chemical compound relationships for SPI1 gene
About this table
Transcripts for SPI1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003120 Sigma-Aldrich siRNA for SPI1 Sigma-Aldrich shRNA for SPI1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001080547 NM_003120
REFSEQ mRNAs for SPI1 gene (2 alternative transcripts): NM_001080547.1 NM_003120.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001080547 NM_003120
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001080547                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001080547                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001080547  
Additional cDNA sequence: AK310065.1 CR599683.1 CR606393.1 CR613003.1 CR615071.1 CR625357.1 X52056.1
10 DOTS entries : DT.212447 DT.95110804 DT.91688064 DT.100814731 DT.86855596 DT.91889222 DT.95329601 DT.91688065 DT.92034201 DT.92059421
24/114 AceView cDNA sequences (see all 114
):BI909431 CR613003 CR599683 BQ231837 CR625357 BI909430 CR615071 BM726188 BM701185 CD368540 BQ055885 BM994691 CA306592 N98848 CA308306 NM_003120 CD368431 AW404793 CD365998 BM919205 BI908495 CD370153 BI906692 CD743247
highest scoring ESTs for SPI1 :X52056 AA227631 AA236102 AL547039 AL547842 AL552267 AW404793 AW976120 BE396543 BF903119
Unigene Cluster for SPI1: Spleen focus forming virus (SFFV) proviral integration oncogene spi1 Hs.502511 [show with all ESTs ] Unigene Representative Sequence: NM_001080547 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for SPI1 ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b SP1 :                     SP2 :                     SP3 :     -   -              
About this scheme ECgene alternative splicing isoforms for SPI1 2 Ensembl transcripts including schematic representations : ENST00000378538
ENST00000227163
Expression for SPI1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SPI1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SPI1 1 / 2 / 3
3 probe-sets matching SPI1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAGGACAGCASOURCE GeneReport for Unigene cluster: Hs.502511 Expression variation in blood from EXPOLDB for SPI1
Orthologs for SPI1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SPI1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for SPI1 ENSEMBL Gene Tree for SPI1 Paralogs for SPI1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SPI1 gene SPIB 2 SPIC 2
SNPs/Variants for SPI1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SPI1 (up to first 250kb)
Disorders & Mutations for SPI1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 165170 10/13 Novoseek disease relationships for SPI1 gene (see all 13
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
erythroleukemia
72.47
11
8502483 (3), 2338340 (2), 1620109 (1), 2044959 (1) (see all 8 )
leukemogenesis
42.94
4
17361223 (1), 15910240 (1)
leukemia
37.62
6
16909135 (1), 16735999 (1), 11841448 (1), 16158816 (1) (see all 6 )
microphthalmia
31.16
2
15304486 (1), 16109714 (1)
hodgkin disease
30.77
9
15339679 (4), 11696441 (1), 16648862 (1), 15796964 (1)
myeloid leukemia
29.35
4
9826539 (1), 12393465 (1)
lymphoma b-cell
23.76
6
15339679 (4), 12507907 (1), 15202521 (1)
plasmacytoma
20.60
2
7670114 (1)
leukemia t-cell
16.71
1
9376596 (1)
retinoblastoma
0.34
1
8434021 (1)
About this table Tumor Gene Database : SPI1
Medical News for SPI1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SPI1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/193 PubMed articles for SPI1 gene (see all 193
): The human homologue of the putative proto-oncogene Spi-1: characterization and expression in tumors. (PubMed id 1693183) 1, 2, 3, 4 Ray D.... Moreau-Gachelin F. (1990) Functional and physical interactions between AML1 proteins and an ETS protein, MEF: implications for the pathogenesis of t(8;21)-positive leukemias. (PubMed id 10207087) 3, 4 Mao S.... Nimer S.D. (1999) SPI-B activates transcription via a unique proline, serine, and threonine domain and exhibits DNA binding affinity differences from PU.1. (PubMed id 10196196) 3, 4 Rao S.... Simon M.C. (1999) The myeloid master regulator transcription factor PU.1 is inactivated by AML1-ETO in t(8;21) myeloid leukemia. (PubMed id 12393465) 1, 3 Vangala R.K....Behre G. (2003) Carrier-independent nuclear import of the transcription factor PU.1 via RanGTP-stimulated binding to Nup153. (PubMed id 15632149) 1, 3 Zhong H....Yaseen N.R. (2005) Negative cross-talk between hematopoietic regulators: GATA proteins repress PU.1. (PubMed id 10411939) 1, 3 Zhang P....Sun Z. (1999) PU.1 regulates the tissue-specific expression of dendritic cell-specific intercellular adhesion molecule (ICAM)-3-grabbing nonintegrin. (PubMed id 16051608) 1, 3 Dominguez-Soto A....Corbi A.L. (2005) Localization of the human oncogene SPI1 on chromosome 11, region p11.22. (PubMed id 2338340) 1, 3 Nguyen V.C....Moreau-Gachelin F. (1990) Human T-cell leukemia virus type I Tax transactivates the promoter of human prointerleukin-1beta gene through association with two transcription factors, nuclear factor-interleukin-6 and Spi-1. (PubMed id 9376596) 1, 3 Tsukada J....Eto S. (1997) Differential phosphorylations of Spi-B and Spi-1 transcription factors. (PubMed id 8632909) 1, 3 Mao C....Moreau-Gachelin F. (1996)
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Genome Databases showing SPI1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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(According to HUGE )
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Specialized Databases showing SPI1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SPI1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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