SPHKAP Gene
protein-coding GIFtS : 47
GCID: GC02 M228844
SPHK1 interactor, AKAP domain containing
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Aliasesfor SPHKAP gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases SPHK1 Interactor, AKAP Domain Containing 1 2 KIAA16783 5 SKIP1 2 3 5 A-Kinase Anchor Protein SPHKAP2 Sphingosine Kinase Type 1-Interacting Protein2 3 SPHK1 (Sphingosine Kinase Type 1) Interacting Protein2 SPHK1-Interactor And AKAP Domain-Containing Protein2 3
Export aliases for SPHKAP gene to outside databases Previous GC identifers: GC02M228553 GC02M220686
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Summariesfor SPHKAP gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: SPKAP_HUMAN, Q2M3C7 Function : Anchoring protein that binds preferentially to the type I regulatory subunit of c-AMP-dependent proteinkinase (PKA type I) and targets it to distinct subcellular compartments. May act as a converging factor linking cAMP and sphingosine signaling pathways. Plays a regulatory role in the modulation of SPHK1
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Genomic Viewsfor SPHKAP gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_005403.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SPHKAP gene promoter: AP-2rep LHX3b/Lhx3b FOXD3 LUN-1 POU2F1 POU2F1a Chx10 LHX3a/Lhx3a LyF-1 RSRFC4 Other transcription factors Search SABiosciences Chromatin IP Primers for SPHKAP Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SPHKAP
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q36 Ensembl cytogenetic band: 2q36.3 HGNC cytogenetic band: 2q36.3 SPHKAP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M228844: view genomic region
(about GC identifiers )
Start:
228,844,666 bp from pter
End:
229,046,361 bp from pter
Size:
201,696 bases
Orientation:
minus strand
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Proteinsfor SPHKAP gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SPKAP_HUMAN, Q2M3C7 (See
protein sequence )Recommended Name: A-kinase anchor protein SPHKAP Size : 1700 amino acids; 186456 Da
Subunit : Interacts (via the PKA-RII subunit binding domain) with the RI subunit of PKA. Interacts with SPHK1; theinteraction greatly reduces SPHK1 activity
Subcellular location : Cytoplasm. Note=Colocalizes with SPHK1 in the cytoplasm
Sequence caution : Sequence=CAH18152.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : Q68DA3 Q68DR8 Q9C0I5Alternative splicing : 2 isoforms : Q2M3C7-1 Q2M3C7-2 Explore the universe of human proteins at neXtProt for SPHKAP: NX_Q2M3C7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q2M3C7 SPHKAP Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001136116.1 NP_085126.2 ENSEMBL proteins: ENSP00000375909 ENSP00000339886 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
SPHKAP for ontologies About GeneDecksing SPHKAP Antibody Products: Assay Products for SPHKAP:
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Protein
Domains / Familiesfor SPHKAP gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SPHKAP for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q2M3C7 ProtoNet protein and cluster: Q2M3C7
UniProtKB/Swiss-Prot: SPKAP_HUMAN, Q2M3C7 Domain : RII-binding site, predicted to form an amphipathic helix, could participate in protein-protein interactionswith a complementary surface on the R-subunit dimer (By similarity) Similarity : Belongs to the AKAP110 family
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Functionfor SPHKAP gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SPKAP_HUMAN, Q2M3C7 Function : Anchoring protein that binds preferentially to the type I regulatory subunit of c-AMP-dependent proteinkinase (PKA type I) and targets it to distinct subcellular compartments. May act as a converging factor linking cAMP and sphingosine signaling pathways. Plays a regulatory role in the modulation of SPHK1
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPHKAP (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPHKAP (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): SPHKAP (NM_001142644 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SPHKAP Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPHKAP
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPHKAP
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
SPHKAP for ontologies About GeneDecksing
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Pathways & Interactionsfor SPHKAP gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SPHKAP STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for SPHKAP (Q2M3C7 1 , 3 ENSP00000375909 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor SPHKAP gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SPHKAP 1 HMDB Compound for SPHKAP About this table Search CenterWatch for drugs/clinical trials and news about SPHKAP / SPKAP
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Transcriptsfor SPHKAP gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SPHKAP gene (2 alternative transcripts): NM_001142644.1 NM_030623.3 Unigene Cluster for SPHKAP:
SPHK1 interactor, AKAP domain containing Hs.436306 [show with all ESTs ] Unigene Representative Sequence: NM_001142644 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000392056 (uc002vpq.2 uc002vpp.2 uc010zlx.1 ) ENST00000344657 ENST00000490603 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPHKAP (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPHKAP (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): SPHKAP (NM_001142644 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SPHKAP Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPHKAP
Additional cDNA sequence: AB051465.1 AK090876.1 AK095042.1 AK125481.1 AK127071.1 BC104954.1 BC104956.1 BC143408.1 CR749297.1 CR749494.1
6 DOTS entries : DT.110691 DT.100016439
DT.101960528 DT.432624 DT.65287977 DT.100655174 24/38 AceView cDNA sequences (see all 38 ):
AI290868 AK090876 AA907283 AB051465 Z41011 Z32823 AA910564 CR749297 AX746659 AL134539 AL601181 AK095042 AA461162 AW207414 AK127071 W61242 AA326580 BE670171 BE549786 BI912915 CR749494 Z45301 CB117706 AK125481 GeneLoc Exon Structure
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Expression for SPHKAP gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SPHKAP expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGATGAAGTT
About this image SPHKAP expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Brain Cerebral Cortex Brain Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See SPHKAP Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SPHKAP SOURCE GeneReport for Unigene cluster: Hs.436306 UniProtKB/Swiss-Prot: SPKAP_HUMAN, Q2M3C7 Tissue specificity : Highly expressed in heart. Both isoforms abundantly expressed in ventricle. Also expressed inspleen, ovary and brain SABiosciences Custom PCR Arrays for SPHKAP Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SPHKAPBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SPHKAP QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SPHKAP QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SPHKAP In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPHKAP
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Orthologsfor SPHKAP gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for SPHKAP gene from 3/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for SPHKAP (if available)TreeFam Gene Tree for SPHKAP (if available)
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Paralogsfor SPHKAP gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SPHKAP gene AKAP11 2
SPHKAP for paralogs About GeneDecksing
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Genomic Variantsfor SPHKAP gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SPHKAP (228844666 - 229046361 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 4 variations for SPHKAP 4 CNVs : 32395 98159 2426 32396
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SPHKAP
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Disorders
/ Diseasesfor SPHKAP gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SPHKAP for disorders About GeneDecksing
OMIM gene information: 611646
OMIM disorders : --2 diseases for SPHKAP : About MalaCards hyperglycemia hypoxia Human Genome Epidemiology (HuGE) Navigator: SPHKAP (1 document)Export disorders for SPHKAP gene to outside databases
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Publicationsfor SPHKAP gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SPHKAP gene, integrated from 9 sources (see all 15 ): (articles sorted by number of sources associating them with SPHKAP) Utopia : connect your pdf to the dynamic world of online information
Cloning and characterization of a protein kinase A anchoring protein (AKAP)-related protein that interacts with and regulates sphingosine kinase 1 activity. (PubMed id 12080051) 1 , 2 , 3 Lacana E.... Spiegel S. (2002) Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11214970) 1 , 2 , 3 Nagase T.... Ohara O. (2000) Sphingosine kinase interacting protein is an A-kinase anchoring protein specific for type I cAMP-dependent protein kinase. (PubMed id 20394097) 1 , 2 , 9 Kovanich D....Scholten A. (2010) Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats. (PubMed id 22479372) 1 Saied M.H....Young B.D. (2012) An entirely specific type I A-kinase anchoring protei n that can sequester two molecules of protein kinase A at mitochondria. (PubMed id 22084075) 1 Means C.K....Scott J.D. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Sphingosine kinase 1 is up-regulated during hypoxia in U87MG glioma cells. Role of hypoxia-inducible factors 1 and 2. (PubMed id 18055454) 1 Anelli V....Obeid L.M. (2008) Activation of sphingosine kinase-1 mediates inhibition of vascular smooth muscle cell apoptosis by hyperglycemia. (PubMed id 17325258) 1 You B....Sun J. (2007) Progesterone-induced sphingosine kinase-1 expression in the rat uterus during pregnancy and signaling consequences. (PubMed id 17164439) 1 Jeng Y.J....Soloff M.S. (2007) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007)
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External Searches for SPHKAP gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SPHKAP gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SPHKAP gene
(According to HUGE )
About This Section
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Specialized Databases showing SPHKAP gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SPHKAP Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SPHKAP gene: Search GeneIP for patents involving SPHKAP GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SPHKAP gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SPHKAP OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SPHKAP OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SPHKAP OriGene Protein Over-expression Lysate for SPHKAP Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SPHKAP OriGene 3'-UTR Clone for SPHKAP OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SPHKAP OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SPHKAP Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SPHKAP OriGene Custom Protein Services for SPHKAP OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SPHKAP QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SPHKAP QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SPHKAP QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SPHKAP QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SPHKAP QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SPHKAP
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SPHKAP Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPHKAP
Search ThermoFisher Antibodies for SPHKAP
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SPHKAP
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Aliases for SPHKAP
Databases for SPHKAP
Disorders / Diseases for SPHKAP
Domains / Families for SPHKAP
Drugs / Compounds for SPHKAP
Expression for SPHKAP
Function for SPHKAP
Genomic Views for SPHKAP
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Pathways / Interactions for SPHKAP
Products for SPHKAP
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