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Aliases for SPG20-AS1 Gene

Subcategory (RNA class) for SPG20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPG20-AS1 Gene

  • SPG20 Antisense RNA 1 2 3 4
  • SPG20 Opposite Strand 2 3
  • C13orf43 3 4
  • SPG20OS 3 4
  • SPG20 Opposite Strand Transcript Protein 4
  • Chromosome 13 Open Reading Frame 43 2
  • SPG20 Antisense Gene Protein 1 4

External Ids for SPG20-AS1 Gene

Previous HGNC Symbols for SPG20-AS1 Gene

  • C13orf43
  • SPG20OS

Summaries for SPG20-AS1 Gene

GeneCards Summary for SPG20-AS1 Gene

SPG20-AS1 (SPG20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPG20-AS1 Gene

Genomics for SPG20-AS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SPG20-AS1 Gene

Start:
36,346,431 bp from pter
End:
36,369,735 bp from pter
Size:
23,305 bases
Orientation:
Plus strand

Genomic View for SPG20-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPG20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPG20-AS1 Gene

No data available for Regulatory Elements for SPG20-AS1 Gene

Proteins for SPG20-AS1 Gene

  • Protein details for SPG20-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CW21-SPGOS_HUMAN
    Recommended name:
    Putative uncharacterized protein SPG20-AS1
    Protein Accession:
    P0CW21
    Secondary Accessions:

    Protein attributes for SPG20-AS1 Gene

    Size:
    52 amino acids
    Molecular mass:
    6167 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPG20-AS1 Gene

Proteomics data for SPG20-AS1 Gene at MOPED

Post-translational modifications for SPG20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPG20-AS1 Gene

Domains for SPG20-AS1 Gene

Protein Domains for SPG20-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPG20-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPG20-AS1 Gene

Function for SPG20-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPG20-AS1 Gene

Localization for SPG20-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPG20-AS1 Gene

Pathways for SPG20-AS1 Gene

SuperPathways for SPG20-AS1 Gene

No Data Available

Interacting Proteins for SPG20-AS1 Gene

Gene Ontology (GO) - Biological Process for SPG20-AS1 Gene

None

No data available for Pathways by source for SPG20-AS1 Gene

Transcripts for SPG20-AS1 Gene

mRNA/cDNA for SPG20-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPG20-AS1 Gene

No ASD Table

Relevant External Links for SPG20-AS1 Gene

GeneLoc Exon Structure for
SPG20-AS1
ECgene alternative splicing isoforms for
SPG20-AS1

Expression for SPG20-AS1 Gene

mRNA expression in normal human tissues for SPG20-AS1 Gene

genes like me logo Genes that share expressions with SPG20-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SPG20-AS1 Gene

Orthologs for SPG20-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SPG20-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPG20OS 36
  • 100 (a)
OneToOne
Species with no ortholog for SPG20-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPG20-AS1 Gene

ENSEMBL:
Gene Tree for SPG20-AS1 (if available)
TreeFam:
Gene Tree for SPG20-AS1 (if available)

Paralogs for SPG20-AS1 Gene

No data available for Paralogs for SPG20-AS1 Gene

Variants for SPG20-AS1 Gene

Relevant External Links for SPG20-AS1 Gene

HapMap Linkage Disequilibrium report
SPG20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SPG20-AS1 Gene

Disorders for SPG20-AS1 Gene

No disorders were found for SPG20-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SPG20-AS1 Gene

Publications for SPG20-AS1 Gene

  1. Expressed sequence tag analysis of adult human lens for the NEIBank project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G. … Peterson K. (Mol. Vis. 2002) 3
  2. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 4

Products for SPG20-AS1 Gene

Sources for SPG20-AS1 Gene

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