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Aliases for SPG20-AS1 Gene

Subcategory (RNA class) for SPG20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPG20-AS1 Gene

  • SPG20 Antisense RNA 1 2 3 4 5
  • SPG20 Opposite Strand 2 3
  • C13orf43 3 4
  • SPG20OS 3 4
  • SPG20 Opposite Strand Transcript Protein 4
  • Chromosome 13 Open Reading Frame 43 2
  • SPG20 Antisense Gene Protein 1 4

External Ids for SPG20-AS1 Gene

Previous HGNC Symbols for SPG20-AS1 Gene

  • C13orf43
  • SPG20OS

Summaries for SPG20-AS1 Gene

GeneCards Summary for SPG20-AS1 Gene

SPG20-AS1 (SPG20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPG20-AS1 Gene

Genomics for SPG20-AS1 Gene

Regulatory Elements for SPG20-AS1 Gene

Enhancers for SPG20-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F036997 1.2 ENCODE 16.2 +653.7 653652 4.6 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 EXOSC8 SPG20-AS1 SUPT20H ALG5 CSNK1A1L
GH13F036343 1.1 ENCODE 17 -0.9 -867 4.1 HDGF PKNOX1 CREB3L1 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 ZNF143 SOHLH2 SPG20 SPG20-AS1 CCDC169 EXOSC8 RFXAP CCDC169-SOHLH2
GH13F035770 1.1 ENCODE 16.3 -574.4 -574398 2.2 HDGF PKNOX1 CREB3L1 SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF143 SPG20-AS1 PHBP13 LINC00445 GC13M035845
GH13F036416 1.3 FANTOM5 Ensembl ENCODE 6.7 +71.3 71338 2.3 TBP JUN ZEB1 KAT2B ZNF316 NFE2 CREM MAFK NFE2L2 CHD2 SPG20-AS1 SPG20 CCNA1
GH13F036673 0.8 ENCODE 10.5 +327.5 327528 0.2 TEAD4 ZIC2 ZNF324 ZFHX2 GLIS2 POLR2A PATZ1 ZNF391 EGR2 ZNF263 RFXAP SPG20-AS1 SERTM1 GAPDHP34
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPG20-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPG20-AS1 Gene

Chromosome:
13
Start:
36,346,431 bp from pter
End:
36,369,735 bp from pter
Size:
23,305 bases
Orientation:
Plus strand

Genomic View for SPG20-AS1 Gene

Genes around SPG20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPG20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPG20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPG20-AS1 Gene

Proteins for SPG20-AS1 Gene

  • Protein details for SPG20-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CW21-SPGOS_HUMAN
    Recommended name:
    Putative uncharacterized protein SPG20-AS1
    Protein Accession:
    P0CW21

    Protein attributes for SPG20-AS1 Gene

    Size:
    52 amino acids
    Molecular mass:
    6167 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPG20-AS1 Gene

Post-translational modifications for SPG20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPG20-AS1 Gene

Domains & Families for SPG20-AS1 Gene

Protein Domains for SPG20-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPG20-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPG20-AS1 Gene

Function for SPG20-AS1 Gene

Phenotypes for SPG20-AS1 Gene

GenomeRNAi human phenotypes for SPG20-AS1:
genes like me logo Genes that share phenotypes with SPG20-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPG20-AS1 Gene

Localization for SPG20-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPG20-AS1 gene
Compartment Confidence
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPG20-AS1 Gene

Pathways & Interactions for SPG20-AS1 Gene

SuperPathways for SPG20-AS1 Gene

No Data Available

Interacting Proteins for SPG20-AS1 Gene

Gene Ontology (GO) - Biological Process for SPG20-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPG20-AS1 Gene

Transcripts for SPG20-AS1 Gene

mRNA/cDNA for SPG20-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPG20-AS1 Gene

No ASD Table

Relevant External Links for SPG20-AS1 Gene

GeneLoc Exon Structure for
SPG20-AS1
ECgene alternative splicing isoforms for
SPG20-AS1

Expression for SPG20-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPG20-AS1 Gene

genes like me logo Genes that share expression patterns with SPG20-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPG20-AS1 Gene

Orthologs for SPG20-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SPG20-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPG20OS 35
  • 100 (a)
OneToOne
Species where no ortholog for SPG20-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPG20-AS1 Gene

ENSEMBL:
Gene Tree for SPG20-AS1 (if available)
TreeFam:
Gene Tree for SPG20-AS1 (if available)

Paralogs for SPG20-AS1 Gene

No data available for Paralogs for SPG20-AS1 Gene

Variants for SPG20-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPG20-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1041138 -- 36,366,132(-) TCTAA(A/C)GTATT intron-variant
rs1041139 -- 36,365,986(-) ACTGC(A/G)GGAAT intron-variant
rs1041140 -- 36,365,891(-) GGTGA(C/T)TGGCT intron-variant
rs1056850 -- 36,368,396(-) TGGAG(A/C)GTATT intron-variant
rs10627452 -- 36,362,352(+) ATCTC(-/A/AA/AAA)AAAAA intron-variant

Relevant External Links for SPG20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPG20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPG20-AS1 Gene

Disorders for SPG20-AS1 Gene

Relevant External Links for SPG20-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPG20-AS1

No disorders were found for SPG20-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPG20-AS1 Gene

Publications for SPG20-AS1 Gene

  1. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 4 64
  2. Expressed sequence tag analysis of adult human lens for the NEIBank project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G. … Peterson K. (Mol. Vis. 2002) 3 64

Products for SPG20-AS1 Gene

Sources for SPG20-AS1 Gene

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