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SPERT Gene

protein-coding   GIFtS: 47
GCID: GC13P046276

Spermatid Associated

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disease database 

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Spermatid Associated1 2     Testis Specific Leucine Zipper Protein Nurit1
Spermatid Flower-Like Structure Protein1 2     NURIT2
Protein Chibby Homolog 22 3     Novel Leucine Zipper Testicular Protein2
CBY22 3     Spermatid-Associated Protein2
Chibby Homolog 2 (Drosophila)1     Testis-Specific Leucine Zipper Protein Nurit2

External Ids:    HGNC: 307201   Entrez Gene: 2200822   Ensembl: ENSG000001740157   UniProtKB: Q8NA613   

Export aliases for SPERT gene to outside databases

Previous GC identifers: GC13P045175 GC13P027073


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SPERT Gene:
SPERT (spermatid associated) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000013.10  NT_024524.15  NC_018924.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SPERT gene promoter:
         Max1   Pax-5   AML1a   Tal-1beta   RORalpha2   E47   AREB6   Sox9   En-1   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSPERT promoter sequence
   Search Chromatin IP Primers for SPERT

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPERT


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.13   Ensembl cytogenetic band:  13q14.13   HGNC cytogenetic band: 13q14.13

SPERT Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPERT gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13P046276:  view genomic region     (about GC identifiers)

Start:
46,276,446 bp from pter      End:
46,288,694 bp from pter
Size:
12,249 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: SPERT_HUMAN, Q8NA61 (See protein sequence)
Recommended Name: Spermatid-associated protein  
Size: 448 amino acids; 51570 Da
Subunit: Homodimer. Binds to NEK1 (By similarity)
Secondary accessions: A8K8I5 Q8NHV2
Alternative splicing: 2 isoforms:  Q8NA61-1   Q8NA61-2   

Explore the universe of human proteins at neXtProt for SPERT: NX_Q8NA61

Explore proteomics data for SPERT at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See SPERT Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001273270.1  NP_001273271.1  NP_689932.1  

    ENSEMBL proteins: 
     ENSP00000309189   ENSP00000435230   ENSP00000368249  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR028118 Chibby_fam
     IPR026655 SPERT

    Graphical View of Domain Structure for InterPro Entry Q8NA61

    ProtoNet protein and cluster: Q8NA61

    UniProtKB/Swiss-Prot: SPERT_HUMAN, Q8NA61
    Similarity: Belongs to the chibby family. SPERT subfamily


    Find genes that share domains with SPERT           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for SPERT

    miRNA
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    miRTarBase miRNAs that target SPERT:
    hsa-mir-1 (MIRT023659)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2
    plasma membrane2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016023cytoplasmic membrane-bounded vesicle ISS12204287

    Find genes that share ontologies with SPERT           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SPERT
    Interactions:

        Search GeneGlobe Interaction Network for SPERT

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for SPERT (Q8NA613 ENSP000003091894) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NINLQ9Y2I63, ENSP000002788864I2D: score=3 STRING: ENSP00000278886
    CEP44Q9C0F13, ENSP000003894274I2D: score=3 STRING: ENSP00000389427
    TUBGCP4Q9UGJ13, ENSP000002603834I2D: score=2 STRING: ENSP00000260383
    MLH1P406923I2D: score=1 
    --Q9BVR63I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SPERT

    1 Novoseek inferred chemical compound relationship for SPERT gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    leucine 69.1 6 8288566 (1), 10944455 (1), 12351190 (1), 9214634 (1) (see all 6)



    Find genes that share compounds with SPERT           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SPERT gene (3 alternative transcripts): 
    NM_001286341.1  NM_001286342.1  NM_152719.2  

    Unigene Cluster for SPERT:

    Spermatid associated
    Hs.186363  [show with all ESTs]
    Unigene Representative Sequence: AK292350
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000310521(uc001van.1) ENST00000533564 ENST00000378966(uc001vao.2)

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    Additional mRNA sequence: 

    AK093129.1 AK292350.1 BC027609.2 

    2 DOTS entries:

    DT.99999245  DT.75187731 

    10 AceView cDNA sequences:

    BC027609 BI825284 AX747942 BI462342 AI611034 AK093129 NM_152719 CD359993 
    BG723733 BI465179 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for SPERT    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c
    SP1:                    -                     
    SP2:              -     -                     
    SP3:                                          


    ECgene alternative splicing isoforms for SPERT

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SPERT expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCGGCCAGGA
    SPERT Expression
    About this image

    SPERT Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SPERT Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.186363
        Custom PCR Arrays for SPERT
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPERT

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for SPERT gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Spert1 , 5 spermatid associated1, 5 81.95(n)1
    79.55(a)1
      14 (40.23 cM)5
    679261  NM_001164139.11  NP_001157611.11 
     755828345 
    chicken
    (Gallus gallus)
    Aves SPERT1 spermatid associated 50.29(n)
    36.59(a)
      418848  NM_001081701.1  NP_001075170.1 
    lizard
    (Anolis carolinensis)
    Reptilia SPERT6
    spermatid associated
    36(a)
    1 ↔ 1
    GL343297.1(1315652-1317017)


    ENSEMBL Gene Tree for SPERT (if available)
    TreeFam Gene Tree for SPERT (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SPERT (see all 345)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 13 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1410719301,2
    --46274598(+) ACAGTA/GAGTTT 1 -- us2k10--------
    rs15361811,2
    C,F,A,H--46274638(+) attcaT/Gagtag 1 -- us2k126Minor allele frequency- G:0.40NS EA NA WA CSA 2766
    rs1469328701,2
    C--46274719(+) GGGATC/TGACTG 1 -- us2k10--------
    rs1869690021,2
    --46274819(+) CATAAA/GGCTTC 1 -- us2k10--------
    rs79880941,2
    A,H--46274847(+) TCTTTG/AACCTC 1 -- us2k1 tfbs34Minor allele frequency- A:0.00NS EA 420
    rs1405911591,2
    --46274935(+) TGGCT-/GGTAGC 1 -- us2k10--------
    rs79892761,2
    A,H--46274951(+) AGTATT/CGCCTT 1 -- us2k14Minor allele frequency- C:0.00NS EA 416
    rs1379747361,2
    C--46274979(+) ACATAC/TACCAG 1 -- us2k10--------
    rs79882811,2
    A,H--46274989(+) GATTTG/AGGACT 1 -- us2k14Minor allele frequency- A:0.00NS EA 418
    rs1416929641,2
    --46275105(+) CAGTCA/GTTATG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SPERT (46276446 - 46288694 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for SPERT:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv250e201CNV Deletion23290073

    Human Gene Mutation Database (HGMD): SPERT
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing SPERT
    DNA2.0 Custom Variant and Variant Library Synthesis for SPERT

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with SPERT           About GenesLikeMe

    Genetic Association Database (GAD): SPERT

    Export disorders for SPERT gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SPERT gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with SPERT)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A genome-wide scan for signatures of recent selection in Holstein cattle. (PubMed id 20096028)1, 3 Qanbari S....Simianer H. (Anim. Genet. 2010)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Nurit, a novel leucine-zipper protein, expressed uniquely in the spermatid flower-like structure. (PubMed id 12204287)1, 3 Feige E....Motro B. (Mech. Dev. 2002)
    4. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)
    5. The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)2 Dunham A.... Ross M.T. (Nature 2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    8. ASI1, a gene encoding a novel leucine zipper protein, is induced during development of the macronucleus in Tetrahymena. (PubMed id 12351190)9 Udani R.A. and Karrer K.M. (Mech. Dev. 2002)
    9. RBP95, a novel leucine zipper protein, binds to the retinoblastoma protein. (PubMed id 10944455)9 Wen H. and Ao S. (Biochem. Biophys. Res. Commun. 2000)
    10. KARP-1: a novel leucine zipper protein expressed from the Ku86 autoantigen locus is implicated in the control of DNA-dependent protein kinase activity. (PubMed id 9214634)9 Myung K.... Hendrickson E.A. (EMBO J. 1997)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 220082 HGNC: 30720 AceView: NURIT Ensembl:ENSG00000174015 euGenes: HUgn220082
    ECgene: SPERT H-InvDB: SPERT

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SPERT Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SPERT gene:
    Search GeneIP for patents involving SPERT

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     OriGene ORF clones in mouse, rat for SPERT   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for SPERT   OriGene Custom Protein Services for SPERT  

     
     
     Block miRNA regulation of human, mouse, rat SPERT using miScript Target Protectors SeqTarget long-range PCR primers for resequencing SPERT
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPERT Predesigned siRNA for gene silencing in human, mouse, rat SPERT
     QuantiFast Probe-based Assays in human, mouse, rat SPERT QuantiTect SYBR Green Assays in human, mouse, rat SPERT
     Custom PCR Arrays for SPERT Search Chromatin IP Primers for SPERT
     Pre-validated RT2 qPCR Primer Assay in human, mouse, rat SPERT  Search GeneGlobe Interaction Network for SPERT
     Regulatory tfbs in SPERT promoter
     GenScript Custom Purified and Recombinant Proteins Services for SPERT GenScript cDNA clones with any tag delivered in your preferred vector for SPERT
     GenScript Custom Assay Services for SPERT GenScript Custom overexpressing Cell Line Services for SPERT
     CloneReady with Over 120,000 Genes  Gene Synthesis: Any Gene in Any Vector
     Vector-based siRNA and miRNA, Ready for Transfection Gene Mutant Library, Variants up to 10^11
     Plasmid Preparation Custom Peptide Services
     Search for Antibodies & Assays

     Search Tocris compounds for SPERT
     Browse Sino Biological Proteins
     Browse Sino Biological Cell Lysates
     Browse Sino Biological cDNA Clones
     4000+ Proteins
     Search Sino Biological for antibodies, proteins & pathways
     Protein Production Services
     Transfection Reagents
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     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

     Novus Tissue Slides
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     SPERT proteins
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     See all of Abcam's Antibodies, Kits and Proteins for SPERT
     Custom Antibody / Protein Production Service
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     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins
     Proteins for SPERT
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     Browse ESI BIO Cell Lines and PureStem Progenitors for SPERT
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
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     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPERT
     SwitchGear 3'UTR luciferase reporter plasmids for SPERT
     SwitchGear Promoter luciferase reporter plasmids for SPERT
     ThermoFisher Antibodies for SPERT
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SPERT
     Browse compounds at ApexBio
     Search Addgene for plasmids for SPERT
      Search eBioscience for proteins for SPERT
      Search eBioscience for elisas for SPERT
      eBioscience FlowRNA Probe Sets
     genOway: Develop your customized and physiologically relevant rodent model for SPERT
     antibodies-online antibodies for SPERT (3 products)
     antibodies-online kits for SPERT (10 products)
      Search antibodies-online for peptides for SPERT
     antibodies-online proteins for SPERT
           
    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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