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Aliases & Descriptions for SPEN
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| KIAA0929 1, 2, 3 | | MINT 1, 2, 3 | | OTT 5 | | OTTHUMP00000010982 2 | | OTTHUMP00000044600 2 | | RBM15 5 | | RBM15C 1, 2 | | RP1-134O19.1 2 | | SHARP 1, 2, 3 |
| | | Descriptions |
|---|
| Msx2 interacting nuclear target (MINT) homolog 2 | | SMART/HDAC1 associated repressor protein 2 | | SMART/HDAC1-associated repressor protein 3 | | SPEN homolog 3 | | nuclear receptor transcription cofactor 2 | | spen homolog, transcriptional regulator 2 | | spen homolog, transcriptional regulator (Drosophila) 1, 2 |
|
| | Search outside databases for aliases for SPEN genePrevious GC identifer: GC01P015920 |
Summaries for SPEN(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SPEN: This gene encodes a hormone inducible transcriptional repressor. Repression of transcription by this gene product can occur through interactions with other repressors, by the recruitment of proteins involved in histone deacetylation, or through sequestration of transcriptional activators. The product of this gene contains a carboxy-terminal domain that permits binding to other corepressor proteins. This domain also permits interaction with members of the NuRD complex, a nucleosome remodeling protein complex that contains deacetylase activity. In addition, this repressor contains several RNA recognition motifs that confer binding to a steroid receptor RNA coactivator; this binding can modulate the activity of both liganded and nonliganded steroid receptors. [provided by RefSeq] UniProtKB/Swiss-Prot: MINT_HUMAN, Q96T58Function: Essential corepressor protein, which probably regulates different key pathways such as the Notch pathway. Negative regulator of the Notch pathway via its interaction with RBPSUH, which prevents the association between NOTCH1 and RBPSUH, and therefore suppresses the transactivation activity of Notch signaling. Blocks the differentiation of precursor B-cells into marginal zone B-cells. Probably represses transcription via the recruitment of large complexes containing histone deacetylase proteins. May bind both to DNA and RNAGene Wiki entry for SPEN |
Genomic Location for SPEN
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SPEN gene 
Entrez Gene cytogenetic band: 1p36.33-p36.11 Ensembl cytogenetic band: 1p36.21 HGNC cytogenetic band: 1p36SPEN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P016047:
(about GC identifiers)
Start:
|
16,046,946 bp from pter |
End:
|
16,139,537 bp from pter |
Size:
|
92,592 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004873.16
| Proteins for SPEN
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MINT_HUMAN, Q96T58 (See
protein sequence)Recommended Name: Msx2-interacting protein Size: 3664 amino acids; 402248 Da
Subunit: Interacts with MSX2 (By similarity). Interacts with NCOR2, HDAC1, HDAC2, RBBP4, MBD3 and MTA1L1. Interacts with RBPSUH; this interaction may prevent the interaction between RBPSUH and NOTCH1. Interacts with the nuclear receptors RAR and PPARD. Interacts with RAR in absence of ligand. Bind to the steroid receptor RNA coactivator SRA. Interacts with Epstein-Barr virus BSFL2/BMLF1
Subcellular location: Nucleus. Note=Associates with chromatin
PDB structures from and Proteopedia :1OW1 (3D)
 
Secondary accessions: Q9H9A8 Q9NWH5 Q9UQ01 Q9Y556Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_055816.2
ENSEMBL proteins: ENSP00000364906 ENSP00000364912
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- | About this table
Antibodies for SPEN: Assays for SPEN: | Protein
Domains/ Families for SPEN(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q96T58
ProtoNet protein and cluster: Q96T58 2 Blocks protein families: IPB000504 RNA-binding region RNP-1 (RNA recognition motif) IPB012921 SPOC
UniProtKB/Swiss-Prot: MINT_HUMAN, Q96T58Domain: The RID domain mediates the interaction with nuclear receptors (By similarity)Domain: The SPOC domain, which mediates the interaction with NCOR2, is essential for the repressive activitySimilarity: Belongs to the RRM Spen familySimilarity: Contains 1 RID (receptor interacting) domainSimilarity: Contains 4 RRM (RNA recognition motif) domainsSimilarity: Contains 1 SPOC domain | Gene Function for SPEN
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015001
Applied Biosystems Silencer® siRNAs for SPEN
Sigma-Aldrich siRNA for SPEN  Sigma-Aldrich shRNA for SPEN  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_015001                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015001                                  untagged cDNA clone in CMV expression vector: NM_015001 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_015001
UniProtKB/Swiss-Prot: MINT_HUMAN, Q96T58Function: Essential corepressor protein, which probably regulates different key pathways such as the Notch pathway. Negative regulator of the Notch pathway via its interaction with RBPSUH, which prevents the association between NOTCH1 and RBPSUH, and therefore suppresses the transactivation activity of Notch signaling. Blocks the differentiation of precursor B-cells into marginal zone B-cells. Probably represses transcription via the recruitment of large complexes containing histone deacetylase proteins. May bind both to DNA and RNAInduction: By hormone 17-beta-estradiol (E2)12 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Spen):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for SPEN
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for SPEN (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SPEN 
5/16 Interacting proteins for SPEN (Q96T581 ENSP000003649123) via UniProtKB, MINT, and/or STRING (see all 16
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
IEA | -- | | GO:0007219 | Notch signaling pathway |
IEA | -- | | GO:0045892 | negative regulation of transcription, DNA-dependent |
IEA | -- | About this table
|
Drugs & Compounds for SPEN(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SPEN
|
Transcripts for SPEN(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015001
Sigma-Aldrich siRNA for SPEN  Sigma-Aldrich shRNA for SPEN  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_015001 REFSEQ mRNAs for SPEN gene: NM_015001.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_015001               OriGene GFP tagged cDNA clone in CMV expression vector: NM_015001                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015001                                  untagged cDNA clone in CMV expression vector: NM_015001  Additional cDNA sequence: AB023146.1 AF085964.1 AF356524.1 AK000882.1 AK022949.1 AK092332.1 AK127577.1 AL096858.1 CR620882.1 11 DOTS entries: DT.446133 DT.91754742 DT.97846453 DT.40208796 DT.100778078 DT.426835 DT.92064564 DT.86996218 DT.95173478 DT.95356844 DT.95137800 24/290 AceView cDNA sequences (see all 290
):BU631715 CD172437 AI668831 AW469387 BM832329 AI261236 AK000882 CA419912 AI693158 BE219154 AI538488 AL096858 BU631681 AK022949 AB023146 BF195793 AI221483 BM831808 BU624742 AI554308 BE931618 NM_015001 T87389 BX956403
highest scoring ESTs for SPEN:AL096858 AA004363 AA096228 AA099616 AA171695 AA249191 AA262827 AA291162 AA295573 AA384953 Unigene Cluster for SPEN: Spen homolog, transcriptional regulator (Drosophila) Hs.558463 [show with all ESTs]Unigene Representative Sequence: NM_015001
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SPEN (see all 7
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18a | · | 18b | ^ | 19a | · | 19b | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SPEN
2 Ensembl transcripts including schematic representations: ENST00000375753
ENST00000375759
|
Expression for SPEN
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SPEN expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SPEN
1 / 2 / 3 7 probe-sets matching SPEN gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GACTCGCAGA
SOURCE GeneReport for Unigene cluster: Hs.558463 UniProtKB/Swiss-Prot: MINT_HUMAN, Q96T58Tissue specificity: Expressed at high level in brain, testis, spleen and thymus. Expressed at intermediate level in kidney, liver, mammary gland and skin |
Orthologs for SPEN
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SPEN gene from 5/9 species (see all 9
)
About this table Species with no ortholog for SPEN
ENSEMBL Gene Tree for SPEN | Paralogs for SPEN(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SPEN gene
- RBM15B2 RBM152
|
SNPs/Variants for SPEN(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SPEN (up to first 250kb)
|
Disorders & Mutations for SPEN
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606077 1 Novoseek disease relationship for SPEN gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cancer |
0.00 |
2 |
17234755 (1), 15824732 (1) |
About this table
|
Medical News for SPEN(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SPEN (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/29 PubMed articles for SPEN gene (see all 29
):- Sharp, an inducible cofactor that integrates nuclear receptor repression and activation. (PubMed id 11331609)1, 2, 3, 4 Shi Y....Evans R.M. (2001)
- A conserved structural motif reveals the essential transcriptional repression function of Spen proteins and their role in developmental signaling. (PubMed id 12897056)1, 3, 4 Ariyoshi M. and Schwabe J.W.R. (2003)
- The peroxisome proliferator-activated receptor delta, an integrator of transcriptional repression and nuclear receptor signaling. (PubMed id 11867749)1, 3, 4 Shi Y.... Evans R.M. (2002)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- SHARP is a novel component of the Notch/RBP-Jkappa signalling pathway. (PubMed id 12374742)3, 4 Oswald F....Schmid R.M. (2002)
- Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10231032)3, 4 Nagase T....Ohara O. (1999)
|
Search for SPEN
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SPEN
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SPEN
(According to HUGE)
About This Section
| |
Specialized Databases showing SPEN(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SPEN(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SPEN:

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Incremental update: 13 Oct 2009
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