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Aliases for SPECC1L-ADORA2A Gene

Subcategory (RNA class) for SPECC1L-ADORA2A Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for SPECC1L-ADORA2A Gene

  • SPECC1L-ADORA2A Readthrough (NMD Candidate) 2 3 5

External Ids for SPECC1L-ADORA2A Gene

Previous GeneCards Identifiers for SPECC1L-ADORA2A Gene

  • GC22U900941
  • GC22P024740
  • GC22P024271
  • GC22P024296
  • GC22P024313
  • GC22P024328

Summaries for SPECC1L-ADORA2A Gene

Entrez Gene Summary for SPECC1L-ADORA2A Gene

  • This locus represents naturally occurring readthrough transcription between the neighboring SPECC1L (sperm antigen with calponin homology and coiled-coil domains 1-like) and ADORA2A (adenosine A2a receptor) genes on chromosome 22. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is unlikely to produce a protein product. [provided by RefSeq, Jun 2013]

GeneCards Summary for SPECC1L-ADORA2A Gene

SPECC1L-ADORA2A (SPECC1L-ADORA2A Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. GO annotations related to this gene include G-protein coupled receptor activity and enzyme binding. An important paralog of this gene is SPECC1L.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPECC1L-ADORA2A Gene

Genomics for SPECC1L-ADORA2A Gene

Regulatory Elements for SPECC1L-ADORA2A Gene

Enhancers for SPECC1L-ADORA2A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F024270 0.2 ENCODE 0.8 +0.6 644 2.5 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 ZNF121 GLIS2 ZNF143 POM121L9P SPECC1L GGTLC4P SPECC1L-ADORA2A LOC105372960
GH22F024280 0.2 Ensembl 0.4 +10.1 10084 0.6 POM121L9P UPB1 ADORA2A-AS1 SPECC1L SPECC1L-ADORA2A LOC105372960
GH22F024284 0.9 Ensembl ENCODE 0.3 +17.9 17921 8.8 PKNOX1 SIN3A FEZF1 YY1 FOS ZNF202 SP3 JUNB TSHZ1 TBX21 POM121L9P GGTLC4P ADORA2A BCRP1 ZNF70 MIF-AS1 UPB1 ENSG00000228923 ENSG00000232545 ENSG00000272578
GH22F024302 1 Ensembl ENCODE 0.3 +33.2 33182 4.0 SIN3A FEZF1 RAD21 RARA SCRT2 RCOR1 FOS ZNF362 USF2 NR2F2 POM121L9P SPECC1L UPB1 ENSG00000228923 ADORA2A BCRP3 SPECC1L-ADORA2A LOC105372960
GH22F024331 1 ENCODE 0.2 +61.2 61151 0.2 ZNF639 PKNOX1 CREB3L1 ZFP37 ZNF83 ZNF335 ZNF316 HMBOX1 SPI1 TRIM28 SPECC1L ADORA2A UPB1 ADORA2A-AS1 SPECC1L-ADORA2A LOC105372960
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPECC1L-ADORA2A on UCSC Golden Path with GeneCards custom track

Promoters for SPECC1L-ADORA2A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000084721 683 2601 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 ZNF121 GLIS2 ZNF143

Genomic Location for SPECC1L-ADORA2A Gene

Chromosome:
22
Start:
24,270,817 bp from pter
End:
24,442,360 bp from pter
Size:
171,544 bases
Orientation:
Plus strand

Genomic View for SPECC1L-ADORA2A Gene

Genes around SPECC1L-ADORA2A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPECC1L-ADORA2A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPECC1L-ADORA2A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPECC1L-ADORA2A Gene

Proteins for SPECC1L-ADORA2A Gene

  • Protein details for SPECC1L-ADORA2A Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F8WAN1
    Recommended name:
    Protein SPECC1L-ADORA2A
    Protein Accession:
    F8WAN1

    Protein attributes for SPECC1L-ADORA2A Gene

    Size:
    911 amino acids
    Molecular mass:
    101514 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPECC1L-ADORA2A Gene

Post-translational modifications for SPECC1L-ADORA2A Gene

No Post-translational modifications

Other Protein References for SPECC1L-ADORA2A Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for SPECC1L-ADORA2A Gene

Domains & Families for SPECC1L-ADORA2A Gene

Protein Domains for SPECC1L-ADORA2A Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPECC1L-ADORA2A: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPECC1L-ADORA2A Gene

Function for SPECC1L-ADORA2A Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPECC1L-ADORA2A Gene

Localization for SPECC1L-ADORA2A Gene

Gene Ontology (GO) - Cellular Components for SPECC1L-ADORA2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005815 microtubule organizing center IBA --
GO:0031941 filamentous actin IBA --
genes like me logo Genes that share ontologies with SPECC1L-ADORA2A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SPECC1L-ADORA2A Gene

Pathways & Interactions for SPECC1L-ADORA2A Gene

SuperPathways for SPECC1L-ADORA2A Gene

No Data Available

Interacting Proteins for SPECC1L-ADORA2A Gene

Gene Ontology (GO) - Biological Process for SPECC1L-ADORA2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030036 actin cytoskeleton organization IBA --
genes like me logo Genes that share ontologies with SPECC1L-ADORA2A: view

No data available for Pathways by source and SIGNOR curated interactions for SPECC1L-ADORA2A Gene

Transcripts for SPECC1L-ADORA2A Gene

mRNA/cDNA for SPECC1L-ADORA2A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPECC1L-ADORA2A Gene

No ASD Table

Relevant External Links for SPECC1L-ADORA2A Gene

GeneLoc Exon Structure for
SPECC1L-ADORA2A
ECgene alternative splicing isoforms for
SPECC1L-ADORA2A

Expression for SPECC1L-ADORA2A Gene

mRNA expression in normal human tissues for SPECC1L-ADORA2A Gene

genes like me logo Genes that share expression patterns with SPECC1L-ADORA2A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPECC1L-ADORA2A Gene

Orthologs for SPECC1L-ADORA2A Gene

This gene was present in the common ancestor of animals.

Orthologs for SPECC1L-ADORA2A Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SPECC1L 35
  • 78 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Specc1l 35
  • 75 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 73 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 67 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 51 (a)
OneToMany
chicken
(Gallus gallus)
Aves SPECC1L 35
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 47 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii specc1la 35
  • 54 (a)
ManyToMany
specc1lb 35
  • 50 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG13366 35
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3677 35
  • 22 (a)
OneToMany
Species where no ortholog for SPECC1L-ADORA2A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPECC1L-ADORA2A Gene

ENSEMBL:
Gene Tree for SPECC1L-ADORA2A (if available)
TreeFam:
Gene Tree for SPECC1L-ADORA2A (if available)

Paralogs for SPECC1L-ADORA2A Gene

(7) SIMAP similar genes for SPECC1L-ADORA2A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPECC1L-ADORA2A: view

Variants for SPECC1L-ADORA2A Gene

Sequence variations from dbSNP and Humsavar for SPECC1L-ADORA2A Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs2298383 drug-response 24,429,543(+) CTCCC(C/T)GGGGC intron-variant, nc-transcript-variant
rs387907108 Pathogenic 24,322,224(+) ACTCC(A/C)GGCAA nc-transcript-variant, reference, missense
rs786201030 Pathogenic 24,322,169(+) GCCTG(A/C)CTGAA nc-transcript-variant, reference, missense
rs786201031 Pathogenic 24,412,690(+) GTGTC(A/G)GCATC nc-transcript-variant, reference, missense
rs193920978 Uncertain significance 24,321,444(+) TTCCC(G/T)CAGTC nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SPECC1L-ADORA2A Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
dgv8039n54 CNV gain 21841781
esv24290 CNV gain 19812545
esv2724041 CNV deletion 23290073
esv2724068 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3893463 CNV gain 25118596
esv996036 CNV deletion 20482838
nsv1055830 CNV gain 25217958
nsv1057819 CNV gain 25217958
nsv1110863 OTHER inversion 24896259
nsv526567 CNV gain 19592680
nsv588744 CNV gain 21841781
nsv7350 OTHER inversion 18451855
nsv834158 CNV gain 17160897
nsv834160 CNV gain 17160897
nsv953060 CNV duplication 24416366
nsv953061 CNV deletion 24416366
nsv964609 CNV duplication 23825009
nsv964610 CNV duplication 23825009
nsv966093 CNV duplication 23825009
nsv979658 CNV duplication 23825009
nsv9883 CNV gain+loss 18304495
nsv9884 CNV gain+loss 18304495

Relevant External Links for SPECC1L-ADORA2A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPECC1L-ADORA2A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPECC1L-ADORA2A Gene

Disorders for SPECC1L-ADORA2A Gene

Relevant External Links for SPECC1L-ADORA2A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPECC1L-ADORA2A

No disorders were found for SPECC1L-ADORA2A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPECC1L-ADORA2A Gene

Publications for SPECC1L-ADORA2A Gene

  1. Evidence for transcript networks composed of chimeric RNAs in human cells. (PMID: 22238572) Djebali S. … Gingeras T.R. (PLoS ONE 2012) 3 64

Products for SPECC1L-ADORA2A Gene

Sources for SPECC1L-ADORA2A Gene

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