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Aliases for SPDYE7P Gene

Aliases for SPDYE7P Gene

  • Speedy/RINGO Cell Cycle Regulator Family Member E7, Pseudogene 2 3
  • Speedy Homolog E7 (Xenopus Laevis), Pseudogene 2
  • Speedy Protein E7 Pseudogene 4

External Ids for SPDYE7P Gene

Previous GeneCards Identifiers for SPDYE7P Gene

  • GC07M071973
  • GC07M072334

Summaries for SPDYE7P Gene

GeneCards Summary for SPDYE7P Gene

SPDYE7P (Speedy/RINGO Cell Cycle Regulator Family Member E7, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDYE7P Gene

Genomics for SPDYE7P Gene

Regulatory Elements for SPDYE7P Gene

Genomic Location for SPDYE7P Gene

Start:
72,862,757 bp from pter
End:
72,870,510 bp from pter
Size:
7,754 bases
Orientation:
Minus strand

Genomic View for SPDYE7P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPDYE7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPDYE7P Gene

Proteins for SPDYE7P Gene

  • Protein details for SPDYE7P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495Y7-SPDE7_HUMAN
    Recommended name:
    Putative speedy protein E7
    Protein Accession:
    Q495Y7
    Secondary Accessions:

    Protein attributes for SPDYE7P Gene

    Size:
    208 amino acids
    Molecular mass:
    25253 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPDYE7P Gene

Proteomics data for SPDYE7P Gene at MOPED

Post-translational modifications for SPDYE7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPDYE7P Gene

Domains for SPDYE7P Gene

Gene Families for SPDYE7P Gene

HGNC:
  • SPDY :Speedy homologs

Protein Domains for SPDYE7P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPDYE7P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q495Y7

UniProtKB/Swiss-Prot:

SPDE7_HUMAN :
  • Q495Y7
Family:
  • Belongs to the Speedy/Ringo family.
genes like me logo Genes that share domains with SPDYE7P: view

Function for SPDYE7P Gene

Phenotypes for SPDYE7P Gene

GenomeRNAi human phenotypes for SPDYE7P:
genes like me logo Genes that share phenotypes with SPDYE7P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPDYE7P Gene

Localization for SPDYE7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPDYE7P Gene

Pathways for SPDYE7P Gene

SuperPathways for SPDYE7P Gene

No Data Available

Interacting Proteins for SPDYE7P Gene

Gene Ontology (GO) - Biological Process for SPDYE7P Gene

None

No data available for Pathways by source for SPDYE7P Gene

Transcripts for SPDYE7P Gene

mRNA/cDNA for SPDYE7P Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPDYE7P Gene

No ASD Table

Relevant External Links for SPDYE7P Gene

GeneLoc Exon Structure for
SPDYE7P
ECgene alternative splicing isoforms for
SPDYE7P

Expression for SPDYE7P Gene

mRNA expression in normal human tissues for SPDYE7P Gene

mRNA differential expression in normal tissues according to GTEx for SPDYE7P Gene

This gene is overexpressed in Testis (37.3).

SOURCE GeneReport for Unigene cluster for SPDYE7P Gene Hs.591819

genes like me logo Genes that share expressions with SPDYE7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SPDYE7P Gene

Orthologs for SPDYE7P Gene

Evolution for SPDYE7P Gene

ENSEMBL:
Gene Tree for SPDYE7P (if available)
TreeFam:
Gene Tree for SPDYE7P (if available)

No data available for Orthologs for SPDYE7P Gene

Paralogs for SPDYE7P Gene

Selected SIMAP similar genes for SPDYE7P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPDYE7P: view

No data available for Paralogs for SPDYE7P Gene

Variants for SPDYE7P Gene

Sequence variations from dbSNP and Humsavar for SPDYE7P Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs237936 -- 72,869,261(-) aacaa(A/C)aaAAA upstream-variant-2KB
rs390732 -- 72,868,932(+) AGATT(C/G/T)GTCCC nc-transcript-variant
rs1061087 -- 72,869,075(+) CCAAA(C/T)CACTC nc-transcript-variant
rs2867757 -- 72,869,193(+) CGTTT(C/T)TCTGT upstream-variant-2KB
rs2867758 -- 72,869,239(+) TGGCT(C/T)TCTGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPDYE7P Gene

Variant ID Type Subtype PubMed ID
dgv2094e1 CNV Complex 17122850
dgv2095e1 CNV Complex 17122850
dgv1116n67 CNV Gain 20364138
nsv520573 CNV Gain+Loss 19592680
esv34349 CNV Gain 17911159
dgv2097e1 CNV Complex 17122850
dgv2098e1 CNV Complex 17122850
nsv428171 CNV Gain 18775914
dgv2099e1 CNV Complex 17122850
nsv469793 CNV Gain 16826518
nsv888362 CNV Gain 21882294
esv23205 CNV Gain 19812545
nsv8133 CNV Gain 18304495

Relevant External Links for SPDYE7P Gene

HapMap Linkage Disequilibrium report
SPDYE7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPDYE7P Gene

Disorders for SPDYE7P Gene

No disorders were found for SPDYE7P Gene.

No data available for UniProtKB/Swiss-Prot for SPDYE7P Gene

Publications for SPDYE7P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for SPDYE7P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPDYE7P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPDYE7P
    • Block miRNA regulation of SPDYE7P using miScript Target Protectors

    Sources for SPDYE7P Gene

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