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Aliases for SPDYE6 Gene

Aliases for SPDYE6 Gene

  • Speedy/RINGO Cell Cycle Regulator Family Member E6 2 3
  • Speedy Homolog E6 (Xenopus Laevis) 2

External Ids for SPDYE6 Gene

Previous GeneCards Identifiers for SPDYE6 Gene

  • GC07M101778
  • GC07M101988
  • GC07M101346

Summaries for SPDYE6 Gene

GeneCards Summary for SPDYE6 Gene

SPDYE6 (Speedy/RINGO Cell Cycle Regulator Family Member E6) is a Protein Coding gene. An important paralog of this gene is SPDYE2B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDYE6 Gene

Genomics for SPDYE6 Gene

Regulatory Elements for SPDYE6 Gene

Genomic Location for SPDYE6 Gene

Chromosome:
7
Start:
102,345,752 bp from pter
End:
102,357,047 bp from pter
Size:
11,296 bases
Orientation:
Minus strand

Genomic View for SPDYE6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for SPDYE6 Gene

Proteins for SPDYE6 Gene

  • Protein details for SPDYE6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CI01-SPDE6_HUMAN
    Recommended name:
    Putative speedy protein E6
    Protein Accession:
    P0CI01

    Protein attributes for SPDYE6 Gene

    Size:
    402 amino acids
    Molecular mass:
    48349 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPDYE6 Gene

Proteomics data for SPDYE6 Gene at MOPED

Post-translational modifications for SPDYE6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPDYE6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPDYE6 Gene

Domains & Families for SPDYE6 Gene

Gene Families for SPDYE6 Gene

Protein Domains for SPDYE6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPDYE6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPDYE6: view

No data available for UniProtKB/Swiss-Prot for SPDYE6 Gene

Function for SPDYE6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPDYE6 Gene

Localization for SPDYE6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPDYE6 Gene

Pathways & Interactions for SPDYE6 Gene

SuperPathways for SPDYE6 Gene

No Data Available

Interacting Proteins for SPDYE6 Gene

Gene Ontology (GO) - Biological Process for SPDYE6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPDYE6 Gene

Drugs & Compounds for SPDYE6 Gene

No Compound Related Data Available

Transcripts for SPDYE6 Gene

mRNA/cDNA for SPDYE6 Gene

(4) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SPDYE6

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPDYE6 Gene

No ASD Table

Relevant External Links for SPDYE6 Gene

GeneLoc Exon Structure for
SPDYE6
ECgene alternative splicing isoforms for
SPDYE6

Expression for SPDYE6 Gene

mRNA expression in normal human tissues for SPDYE6 Gene

mRNA differential expression in normal tissues according to GTEx for SPDYE6 Gene

This gene is overexpressed in Testis (x4.9).
genes like me logo Genes that share expression patterns with SPDYE6: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SPDYE6 Gene

Orthologs for SPDYE6 Gene

Evolution for SPDYE6 Gene

ENSEMBL:
Gene Tree for SPDYE6 (if available)
TreeFam:
Gene Tree for SPDYE6 (if available)

No data available for Orthologs for SPDYE6 Gene

Paralogs for SPDYE6 Gene

Paralogs for SPDYE6 Gene

(9) SIMAP similar genes for SPDYE6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPDYE6: view

Variants for SPDYE6 Gene

Sequence variations from dbSNP and Humsavar for SPDYE6 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs400361 -- 102,354,745(+) GATGG(A/G)TGACA missense, reference
rs421923 -- 102,354,535(+) TAGTC(C/T)TCTAT intron-variant
rs426099 -- 102,357,463(+) aaata(C/G)aaaaa upstream-variant-2KB
rs803081 -- 102,347,216(+) GGTCC(A/G)GTGTT utr-variant-3-prime
rs1062116 -- 102,356,478(+) GAAAA(C/G)TAGGG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SPDYE6 Gene

Variant ID Type Subtype PubMed ID
nsv831082 CNV Gain 17160897
dgv2121e1 CNV Complex 17122850
nsv428182 CNV Gain 18775914
esv2673677 CNV Deletion 23128226
esv2734944 CNV Deletion 23290073
esv26209 CNV Gain 19812545
nsv8190 CNV Gain+Loss 18304495
nsv831083 CNV Loss 17160897

Relevant External Links for SPDYE6 Gene

HapMap Linkage Disequilibrium report
SPDYE6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPDYE6 Gene

Disorders for SPDYE6 Gene

Relevant External Links for SPDYE6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPDYE6
genes like me logo Genes that share disorders with SPDYE6: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPDYE6 Gene

Publications for SPDYE6 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 67
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 67

Products for SPDYE6 Gene

Sources for SPDYE6 Gene

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