Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SPDYE6 Gene

Aliases for SPDYE6 Gene

  • Speedy/RINGO Cell Cycle Regulator Family Member E6 2 3
  • Speedy Homolog E6 (Xenopus Laevis) 2

External Ids for SPDYE6 Gene

Summaries for SPDYE6 Gene

GeneCards Summary for SPDYE6 Gene

SPDYE6 (Speedy/RINGO Cell Cycle Regulator Family Member E6) is a Protein Coding gene. An important paralog of this gene is SPDYE2B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDYE6 Gene

Genomics for SPDYE6 Gene

Genomic Location for SPDYE6 Gene

Start:
102,345,752 bp from pter
End:
102,357,023 bp from pter
Size:
11,272 bases
Orientation:
Minus strand

Genomic View for SPDYE6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPDYE6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPDYE6 Gene

Regulatory Elements for SPDYE6 Gene

Proteins for SPDYE6 Gene

  • Protein details for SPDYE6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CI01-SPDE6_HUMAN
    Recommended name:
    Putative speedy protein E6
    Protein Accession:
    P0CI01
    Secondary Accessions:

    Protein attributes for SPDYE6 Gene

    Size:
    402 amino acids
    Molecular mass:
    48349 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPDYE6 Gene

Proteomics data for SPDYE6 Gene at MOPED

Post-translational modifications for SPDYE6 Gene

No Post-translational modifications

Other Protein References for SPDYE6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPDYE6 Gene

Domains for SPDYE6 Gene

Gene Families for SPDYE6 Gene

HGNC:
  • SPDY :Speedy homologs

Protein Domains for SPDYE6 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with SPDYE6: view

No data available for UniProtKB/Swiss-Prot for SPDYE6 Gene

Function for SPDYE6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPDYE6 Gene

Localization for SPDYE6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPDYE6 Gene COMPARTMENTS Subcellular localization image for SPDYE6 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for SPDYE6 Gene

Pathways for SPDYE6 Gene

SuperPathways for SPDYE6 Gene

No Data Available

Interacting Proteins for SPDYE6 Gene

Gene Ontology (GO) - Biological Process for SPDYE6 Gene

None

No data available for Pathways by source for SPDYE6 Gene

Transcripts for SPDYE6 Gene

mRNA/cDNA for SPDYE6 Gene

(4) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPDYE6 Gene

No ASD Table

Relevant External Links for SPDYE6 Gene

GeneLoc Exon Structure for
SPDYE6
ECgene alternative splicing isoforms for
SPDYE6

Expression for SPDYE6 Gene

mRNA expression in normal human tissues for SPDYE6 Gene

mRNA differential expression in normal tissues according to GTEx for SPDYE6 Gene

This gene is overexpressed in Testis (4.9).
genes like me logo Genes that share expressions with SPDYE6: view

Orthologs for SPDYE6 Gene

Evolution for SPDYE6 Gene

ENSEMBL:
Gene Tree for SPDYE6 (if available)
TreeFam:
Gene Tree for SPDYE6 (if available)

No data available for Orthologs for SPDYE6 Gene

Paralogs for SPDYE6 Gene

Paralogs for SPDYE6 Gene

Selected SIMAP similar genes for SPDYE6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPDYE6: view

Variants for SPDYE6 Gene

Sequence variations from dbSNP and Humsavar for SPDYE6 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs398335 -- 102,345,796(+) GAGAC(C/G)CACTC utr-variant-3-prime
rs421923 -- 102,354,535(+) TAGTC(C/T)TCTAT intron-variant
rs803068 -- 102,358,849(-) AATTT(C/T)AAATC upstream-variant-2KB
rs803079 -- 102,345,748(+) CAATT(C/G)CTGTG downstream-variant-500B
rs803081 -- 102,347,216(+) GGTCC(A/G)GTGTT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SPDYE6 Gene

Variant ID Type Subtype PubMed ID
nsv831082 CNV Gain 17160897
dgv2121e1 CNV Complex 17122850
nsv428182 CNV Gain 18775914
esv2673677 CNV Deletion 23128226
esv2734944 CNV Deletion 23290073
esv26209 CNV Gain 19812545
nsv8190 CNV Gain+Loss 18304495
nsv831083 CNV Loss 17160897

Relevant External Links for SPDYE6 Gene

HapMap Linkage Disequilibrium report
SPDYE6

Disorders for SPDYE6 Gene

No disorders were found for SPDYE6 Gene.

No data available for UniProtKB/Swiss-Prot for SPDYE6 Gene

Publications for SPDYE6 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for SPDYE6 Gene

Sources for SPDYE6 Gene

Back to Top

Content