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Aliases for SPDYE6 Gene

Aliases for SPDYE6 Gene

  • Speedy/RINGO Cell Cycle Regulator Family Member E6 2 3 5
  • Speedy Homolog E6 (Xenopus Laevis) 2

External Ids for SPDYE6 Gene

Previous GeneCards Identifiers for SPDYE6 Gene

  • GC07M101778
  • GC07M101988
  • GC07M101346

Summaries for SPDYE6 Gene

GeneCards Summary for SPDYE6 Gene

SPDYE6 (Speedy/RINGO Cell Cycle Regulator Family Member E6) is a Protein Coding gene. Among its related pathways are Oocyte meiosis. An important paralog of this gene is SPDYE2B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDYE6 Gene

Genomics for SPDYE6 Gene

Regulatory Elements for SPDYE6 Gene

Enhancers for SPDYE6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F101706 0.4 ENCODE 5 +649.2 649171 1.8 BCOR SMARCA5 ZMYM3 NFXL1 KLF4 CBX1 HDAC2 KDM1A SPDYE6 GC07M101683 GC07P101775
GH07F101947 1.2 Ensembl ENCODE 4 +409.0 409047 1.6 ATF1 CBX3 TBL1XR1 INSM2 RAD21 ZNF366 CREM REST TSHZ1 ZEB2 UPK3BL SPDYE6 ENSG00000272219 GC07P101859
GH07F102358 0.8 Ensembl 0.8 -2.2 -2154 0.8 SMARCA4 ORAI2 LOC100289561 LOC100630923 SPDYE6
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPDYE6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPDYE6 Gene

Chromosome:
7
Start:
102,345,752 bp from pter
End:
102,357,047 bp from pter
Size:
11,296 bases
Orientation:
Minus strand

Genomic View for SPDYE6 Gene

Genes around SPDYE6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPDYE6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPDYE6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPDYE6 Gene

Proteins for SPDYE6 Gene

  • Protein details for SPDYE6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CI01-SPDE6_HUMAN
    Recommended name:
    Putative speedy protein E6
    Protein Accession:
    P0CI01

    Protein attributes for SPDYE6 Gene

    Size:
    402 amino acids
    Molecular mass:
    48349 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPDYE6 Gene

Post-translational modifications for SPDYE6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPDYE6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPDYE6 Gene

Domains & Families for SPDYE6 Gene

Gene Families for SPDYE6 Gene

Protein Domains for SPDYE6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPDYE6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPDYE6: view

No data available for UniProtKB/Swiss-Prot for SPDYE6 Gene

Function for SPDYE6 Gene

Gene Ontology (GO) - Molecular Function for SPDYE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019901 protein kinase binding IBA --
genes like me logo Genes that share ontologies with SPDYE6: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPDYE6 Gene

Localization for SPDYE6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPDYE6 Gene COMPARTMENTS Subcellular localization image for SPDYE6 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPDYE6 Gene

Pathways & Interactions for SPDYE6 Gene

SuperPathways for SPDYE6 Gene

SuperPathway Contained pathways
1 Oocyte meiosis
genes like me logo Genes that share pathways with SPDYE6: view

Pathways by source for SPDYE6 Gene

Interacting Proteins for SPDYE6 Gene

Gene Ontology (GO) - Biological Process for SPDYE6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045859 regulation of protein kinase activity IBA --
genes like me logo Genes that share ontologies with SPDYE6: view

No data available for SIGNOR curated interactions for SPDYE6 Gene

Transcripts for SPDYE6 Gene

mRNA/cDNA for SPDYE6 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPDYE6 Gene

No ASD Table

Relevant External Links for SPDYE6 Gene

GeneLoc Exon Structure for
SPDYE6
ECgene alternative splicing isoforms for
SPDYE6

Expression for SPDYE6 Gene

mRNA expression in normal human tissues for SPDYE6 Gene

mRNA differential expression in normal tissues according to GTEx for SPDYE6 Gene

This gene is overexpressed in Testis (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of SPDYE6 Gene:

SPDYE6
genes like me logo Genes that share expression patterns with SPDYE6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPDYE6 Gene

Orthologs for SPDYE6 Gene

Evolution for SPDYE6 Gene

ENSEMBL:
Gene Tree for SPDYE6 (if available)
TreeFam:
Gene Tree for SPDYE6 (if available)

No data available for Orthologs for SPDYE6 Gene

Paralogs for SPDYE6 Gene

Paralogs for SPDYE6 Gene

(9) SIMAP similar genes for SPDYE6 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for SPDYE6 Gene

genes like me logo Genes that share paralogs with SPDYE6: view

Variants for SPDYE6 Gene

Sequence variations from dbSNP and Humsavar for SPDYE6 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10232123 -- 102,350,313(+) ggagt(A/G)cagtg intron-variant
rs10232255 -- 102,350,440(+) ttttt(A/G)gtaga intron-variant
rs10232260 -- 102,350,452(+) acggg(A/G)tttgg intron-variant
rs10261877 -- 102,350,363(+) caaag(A/G)gttct intron-variant
rs1059797 -- 102,347,229(+) GGAAG(C/T)GAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPDYE6 Gene

Variant ID Type Subtype PubMed ID
dgv3632n106 CNV duplication 24896259
dgv3889e59 CNV duplication 20981092
dgv3890e59 CNV duplication 20981092
dgv3891e59 CNV duplication 20981092
dgv6538n100 CNV gain 25217958
esv26209 CNV gain 19812545
esv2673677 CNV deletion 23128226
esv2734944 CNV deletion 23290073
esv2759548 CNV gain 17122850
esv3614348 CNV gain 21293372
nsv1077496 CNV duplication 25765185
nsv1147387 CNV duplication 26484159
nsv428182 CNV gain 18775914
nsv8190 CNV gain+loss 18304495
nsv831082 CNV gain 17160897
nsv831083 CNV loss 17160897
nsv970918 CNV duplication 23825009
nsv971046 CNV duplication 23825009
nsv971401 CNV duplication 23825009
nsv971402 CNV duplication 23825009

Relevant External Links for SPDYE6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPDYE6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPDYE6 Gene

Disorders for SPDYE6 Gene

Relevant External Links for SPDYE6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPDYE6

No disorders were found for SPDYE6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPDYE6 Gene

Publications for SPDYE6 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for SPDYE6 Gene

Sources for SPDYE6 Gene

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