Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SPDYE5 Gene

Aliases for SPDYE5 Gene

  • Speedy/RINGO Cell Cycle Regulator Family Member E5 2 3
  • Speedy Homolog E5 (Xenopus Laevis) 2

External Ids for SPDYE5 Gene

Summaries for SPDYE5 Gene

GeneCards Summary for SPDYE5 Gene

SPDYE5 (Speedy/RINGO Cell Cycle Regulator Family Member E5) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDYE5 Gene

Genomics for SPDYE5 Gene

Genomic Location for SPDYE5 Gene

Start:
75,493,182 bp from pter
End:
75,504,304 bp from pter
Size:
11,123 bases
Orientation:
Plus strand

Genomic View for SPDYE5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPDYE5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPDYE5 Gene

Regulatory Elements for SPDYE5 Gene

Proteins for SPDYE5 Gene

  • Protein details for SPDYE5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIY4-SPDE5_HUMAN
    Recommended name:
    Putative speedy protein E5
    Protein Accession:
    A6NIY4
    Secondary Accessions:

    Protein attributes for SPDYE5 Gene

    Size:
    337 amino acids
    Molecular mass:
    40483 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPDYE5 Gene

Proteomics data for SPDYE5 Gene at MOPED

Post-translational modifications for SPDYE5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPDYE5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPDYE5 Gene

Domains for SPDYE5 Gene

Gene Families for SPDYE5 Gene

HGNC:
  • SPDY :Speedy homologs

Protein Domains for SPDYE5 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

SPDE5_HUMAN
Family:
  • Belongs to the Speedy/Ringo family.:
    • A6NIY4
genes like me logo Genes that share domains with SPDYE5: view

Function for SPDYE5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPDYE5 Gene

Localization for SPDYE5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPDYE5 Gene COMPARTMENTS Subcellular localization image for SPDYE5 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1
endoplasmic reticulum 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for SPDYE5 Gene

Pathways for SPDYE5 Gene

SuperPathways for SPDYE5 Gene

No Data Available

Interacting Proteins for SPDYE5 Gene

Gene Ontology (GO) - Biological Process for SPDYE5 Gene

None

No data available for Pathways by source for SPDYE5 Gene

Transcripts for SPDYE5 Gene

mRNA/cDNA for SPDYE5 Gene

(4) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPDYE5 Gene

Speedy homolog E5 (Xenopus laevis):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPDYE5 Gene

No ASD Table

Relevant External Links for SPDYE5 Gene

GeneLoc Exon Structure for
SPDYE5
ECgene alternative splicing isoforms for
SPDYE5

Expression for SPDYE5 Gene

mRNA expression in normal human tissues for SPDYE5 Gene

mRNA expression in normal human tissues for SPDYE5 Gene

SOURCE GeneReport for Unigene cluster for SPDYE5 Gene Hs.632298

genes like me logo Genes that share expressions with SPDYE5: view

Orthologs for SPDYE5 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SPDYE5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC742265 36
  • 98.25 (n)
  • 96.3 (a)
Species with no ortholog for SPDYE5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPDYE5 Gene

ENSEMBL:
Gene Tree for SPDYE5 (if available)
TreeFam:
Gene Tree for SPDYE5 (if available)

Paralogs for SPDYE5 Gene

Selected SIMAP similar genes for SPDYE5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPDYE5: view

No data available for Paralogs for SPDYE5 Gene

Variants for SPDYE5 Gene

Sequence variations from dbSNP and Humsavar for SPDYE5 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs794362 -- 75,501,927(-) AAAGG(C/T)GAGCG reference, missense
rs794364 -- 75,501,270(-) GACCG(C/T)CCCTA intron-variant
rs794365 -- 75,500,568(-) GGACA(C/G)GGGAA intron-variant
rs1062117 -- 75,493,577(-) AGAAA(C/T)GATGA upstream-variant-2KB, utr-variant-5-prime
rs1830261 -- 75,503,788(-) aatat(C/T)tcaat utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SPDYE5 Gene

Variant ID Type Subtype PubMed ID
nsv888381 CNV Gain 21882294
nsv528969 CNV Gain 19592680
dgv2102e1 CNV Complex 17122850
essv14753 CNV CNV 17122850
dgv120n16 CNV Deletion 17901297
esv21917 CNV Gain 19812545
nsv8157 CNV Gain+Loss 18304495
nsv482105 CNV Gain 20164927
nsv831036 CNV Loss 17160897

Relevant External Links for SPDYE5 Gene

HapMap Linkage Disequilibrium report
SPDYE5

Disorders for SPDYE5 Gene

No disorders were found for SPDYE5 Gene.

No data available for UniProtKB/Swiss-Prot for SPDYE5 Gene

Publications for SPDYE5 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4

Products for SPDYE5 Gene

Sources for SPDYE5 Gene

Back to Top

Content