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Aliases for SPDYE1 Gene

Aliases for SPDYE1 Gene

  • Speedy/RINGO Cell Cycle Regulator Family Member E1 2 3
  • Williams-Beuren Syndrome Chromosomal Region 19 Protein 3 4
  • Speedy E 2 3
  • WBSCR19 3 4
  • Williams Beuren Syndrome Chromosome Region 19 Protein 3
  • Williams Beuren Syndrome Chromosome Region 19 2
  • Speedy Homolog E1 (Xenopus Laevis) 2
  • Putative WBSCR19-Like Protein 6 3
  • Speedy Homolog E1 3
  • Speedy Protein E1 3
  • Ringo1 3
  • SPDYE 3

External Ids for SPDYE1 Gene

Previous HGNC Symbols for SPDYE1 Gene

  • WBSCR19

Previous GeneCards Identifiers for SPDYE1 Gene

  • GC07P044009
  • GC07P044040

Summaries for SPDYE1 Gene

Entrez Gene Summary for SPDYE1 Gene

  • This gene is located at chromosome 7p13 which is close to the Williams Beuren syndrome chromosome region 7q11.23. [provided by RefSeq, Jul 2008]

GeneCards Summary for SPDYE1 Gene

SPDYE1 (Speedy/RINGO Cell Cycle Regulator Family Member E1) is a Protein Coding gene. Diseases associated with SPDYE1 include williams-beuren syndrome. An important paralog of this gene is SPDYE3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDYE1 Gene

Genomics for SPDYE1 Gene

Regulatory Elements for SPDYE1 Gene

Genomic Location for SPDYE1 Gene

Start:
43,998,953 bp from pter
End:
44,010,124 bp from pter
Size:
11,172 bases
Orientation:
Plus strand

Genomic View for SPDYE1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPDYE1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPDYE1 Gene

Proteins for SPDYE1 Gene

  • Protein details for SPDYE1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NFV5-SPDE1_HUMAN
    Recommended name:
    Speedy protein E1
    Protein Accession:
    Q8NFV5
    Secondary Accessions:
    • Q9NTH5

    Protein attributes for SPDYE1 Gene

    Size:
    336 amino acids
    Molecular mass:
    40668 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPDYE1 Gene

Proteomics data for SPDYE1 Gene at MOPED

Post-translational modifications for SPDYE1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPDYE1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPDYE1 Gene

Domains for SPDYE1 Gene

Gene Families for SPDYE1 Gene

HGNC:
  • SPDY :Speedy homologs

Protein Domains for SPDYE1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPDYE1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NFV5

UniProtKB/Swiss-Prot:

SPDE1_HUMAN :
  • Q8NFV5
Family:
  • Belongs to the Speedy/Ringo family.
genes like me logo Genes that share domains with SPDYE1: view

Function for SPDYE1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPDYE1 Gene

Localization for SPDYE1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPDYE1 Gene COMPARTMENTS Subcellular localization image for SPDYE1 gene
Compartment Confidence
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPDYE1 Gene

Pathways for SPDYE1 Gene

SuperPathways for SPDYE1 Gene

No Data Available

Interacting Proteins for SPDYE1 Gene

Gene Ontology (GO) - Biological Process for SPDYE1 Gene

None

No data available for Pathways by source for SPDYE1 Gene

Transcripts for SPDYE1 Gene

mRNA/cDNA for SPDYE1 Gene

(22) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(9) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPDYE1 Gene

Speedy homolog E1 (Xenopus laevis):
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SPDYE1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SPDYE1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPDYE1 Gene

No ASD Table

Relevant External Links for SPDYE1 Gene

GeneLoc Exon Structure for
SPDYE1
ECgene alternative splicing isoforms for
SPDYE1

Expression for SPDYE1 Gene

mRNA expression in normal human tissues for SPDYE1 Gene

mRNA differential expression in normal tissues according to GTEx for SPDYE1 Gene

This gene is overexpressed in Testis (14.7).

SOURCE GeneReport for Unigene cluster for SPDYE1 Gene Hs.645483

genes like me logo Genes that share expressions with SPDYE1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SPDYE1 Gene

Orthologs for SPDYE1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPDYE1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 92 (a)
OneToMany
-- 36
  • 92 (a)
OneToMany
LOC100615808 35
  • 97.82 (n)
  • 95.24 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 47 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 62 (a)
ManyToMany
-- 36
  • 62 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia 4933411G11Rik 36
  • 50 (a)
ManyToMany
Spdyb 36
  • 47 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 33 (a)
ManyToMany
-- 36
  • 34 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 20 (a)
OneToMany
Species with no ortholog for SPDYE1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPDYE1 Gene

ENSEMBL:
Gene Tree for SPDYE1 (if available)
TreeFam:
Gene Tree for SPDYE1 (if available)

Paralogs for SPDYE1 Gene

Paralogs for SPDYE1 Gene

Selected SIMAP similar genes for SPDYE1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPDYE1: view

Variants for SPDYE1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SPDYE1 Gene

Variant ID Type Subtype PubMed ID
nsv428165 CNV Gain 18775914
nsv830980 CNV Loss 17160897
dgv2079e1 CNV Complex 17122850
nsv8082 CNV Gain 18304495
esv27186 CNV Gain 19812545
esv33894 CNV Loss 17666407
nsv887996 CNV Loss 21882294

Relevant External Links for SPDYE1 Gene

HapMap Linkage Disequilibrium report
SPDYE1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SPDYE1 Gene

Disorders for SPDYE1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for SPDYE1 Gene including...

Search for SPDYE1 Gene in MalaCards »

UniProtKB/Swiss-Prot

SPDE1_HUMAN
  • Note=SPDYE1 is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region.
genes like me logo Genes that share disorders with SPDYE1: view

Publications for SPDYE1 Gene

  1. Identification of additional transcripts in the Williams-Beuren syndrome critical region. (PMID: 12073013) Merla G. … Reymond A. (Hum. Genet. 2002) 2 3 4
  2. Characterization of a new family of cyclin-dependent kinase activators. (PMID: 15574121) Dinarina A. … Nebreda A.R. (Biochem. J. 2005) 3
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4
  4. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4

Products for SPDYE1 Gene

Sources for SPDYE1 Gene

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