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SPDL1 Gene(Protein Coding)

Spindle Apparatus Coiled-Coil Protein 1

GCID:
GC05P169583
GIFtS:
46
Genes Participants
UDN Logo

Aliases for SPDL1 Gene

Aliases for SPDL1 Gene

  • Spindle Apparatus Coiled-Coil Protein 1 2 3 5
  • Spindle Apparatus Coiled-Coil Domain-Containing Protein 1 3 4
  • Coiled-Coil Domain-Containing Protein 99 3 4
  • Rhabdomyosarcoma Antigen MU-RMS-40.4A 3 4
  • Coiled-Coil Domain Containing 99 2 3
  • Arsenite-Related Gene 1 Protein 3 4
  • HSpindly 3 4
  • CCDC99 3 4
  • Rrhabdomyosarcoma Antigen Protein MU-RMS-40.4A 3
  • Spindly Homolog (Drosophila) 2
  • Spindly Homolog 3

External Ids for SPDL1 Gene

Previous HGNC Symbols for SPDL1 Gene

  • CCDC99

Previous GeneCards Identifiers for SPDL1 Gene

  • GC05P169011

Summaries for SPDL1 Gene

GeneCards Summary for SPDL1 Gene

SPDL1 (Spindle Apparatus Coiled-Coil Protein 1) is a Protein Coding gene. Among its related pathways are Mitotic Metaphase and Anaphase and Signaling by Rho GTPases. GO annotations related to this gene include enzyme binding and kinetochore binding.

UniProtKB/Swiss-Prot for SPDL1 Gene

  • Required for the localization of dynein and dynactin to the mitotic kintochore. Dynein is believed to control the initial lateral interaction between the kinetochore and spindle microtubules and to facilitate the subsequent formation of end-on kinetochore-microtubule attachments mediated by the NDC80 complex. Also required for correct spindle orientation. Does not appear to be required for the removal of spindle assembly checkpoint (SAC) proteins from the kinetochore upon bipolar spindle attachment.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPDL1 Gene

Genomics for SPDL1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SPDL1 Gene

Enhancers for SPDL1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SPDL1 on UCSC Golden Path with GeneCards custom track

Promoters for SPDL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SPDL1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPDL1 Gene

Chromosome:
5
Start:
169,583,634 bp from pter
End:
169,604,778 bp from pter
Size:
21,145 bases
Orientation:
Plus strand

Genomic View for SPDL1 Gene

Genes around SPDL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPDL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPDL1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SPDL1 Gene

Proteins for SPDL1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for SPDL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EA4-SPDLY_HUMAN
    Recommended name:
    Protein Spindly
    Protein Accession:
    Q96EA4
    Secondary Accessions:
    • B4E393
    • C9JS47
    • Q8TEC8
    • Q9HD44
    • Q9NX97

    Protein attributes for SPDL1 Gene

    Size:
    605 amino acids
    Molecular mass:
    70172 Da
    Quaternary structure:
    • Interacts with KNTC1 and ZW10. These interactions appear weak and may be transient or indirect.
    SequenceCaution:
    • Sequence=AAG01408.1; Type=Frameshift; Positions=604; Evidence={ECO:0000305}; Sequence=BAA91119.1; Type=Frameshift; Positions=412; Evidence={ECO:0000305}; Sequence=BAB85022.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for SPDL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPDL1 Gene

Proteomics data for SPDL1 Gene at MOPED

Protein Expression for SPDL1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for SPDL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPDL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPDL1 Gene

Domains & Families for SPDL1 Gene

Protein Domains for SPDL1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPDL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96EA4

UniProtKB/Swiss-Prot:

SPDLY_HUMAN :
  • Belongs to the Spindly family.
Family:
  • Belongs to the Spindly family.
genes like me logo Genes that share domains with SPDL1: view

No data available for Gene Families for SPDL1 Gene

Function for SPDL1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for SPDL1 Gene

UniProtKB/Swiss-Prot Function:
Required for the localization of dynein and dynactin to the mitotic kintochore. Dynein is believed to control the initial lateral interaction between the kinetochore and spindle microtubules and to facilitate the subsequent formation of end-on kinetochore-microtubule attachments mediated by the NDC80 complex. Also required for correct spindle orientation. Does not appear to be required for the removal of spindle assembly checkpoint (SAC) proteins from the kinetochore upon bipolar spindle attachment.

Phenotypes for SPDL1 Gene

GenomeRNAi human phenotypes for SPDL1:
genes like me logo Genes that share phenotypes with SPDL1: view

Animal Model Products

CRISPR Products

miRNA for SPDL1 Gene

miRTarBase miRNAs that target SPDL1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SPDL1 Gene

Localization for SPDL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPDL1 Gene

Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Chromosome, centromere, kinetochore. Nucleus. Cytoplasm, cytoskeleton, spindle pole. Note=Localizes to the nucleus in interphase and to the kinetochore in early prometaphase. Relocalizes to the mitotic spindle pole before metaphase and is subsequently lost from the spindle poles after chromosome congression is completed. Removal of this protein from the kinetochore requires the dynein/dynactin complex.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPDL1 Gene COMPARTMENTS Subcellular localization image for SPDL1 gene
Compartment Confidence
cytoskeleton 5
cytosol 5
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for SPDL1 Gene

Pathways & Interactions for SPDL1 Gene

genes like me logo Genes that share pathways with SPDL1: view

Pathways by source for SPDL1 Gene

Gene Ontology (GO) - Biological Process for SPDL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000278 mitotic cell cycle TAS --
GO:0007062 sister chromatid cohesion TAS --
GO:0007264 small GTPase mediated signal transduction TAS --
GO:0051301 cell division IEA --
genes like me logo Genes that share ontologies with SPDL1: view

No data available for SIGNOR curated interactions for SPDL1 Gene

Drugs & Compounds for SPDL1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SPDL1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SPDL1 Gene

(7) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(109) Selected AceView cDNA sequences:
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPDL1 Gene

Spindle apparatus coiled-coil protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPDL1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15
SP1: -
SP2: - - - -
SP3:
SP4:
SP5: - -
SP6:

Relevant External Links for SPDL1 Gene

GeneLoc Exon Structure for
SPDL1
ECgene alternative splicing isoforms for
SPDL1

Expression for SPDL1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for SPDL1 Gene

mRNA expression in normal human tissues for SPDL1 Gene
mRNA expression by BioGPS for SPDL1 GenemRNA expression by GTEx for SPDL1 Gene

Protein differential expression in normal tissues from HIPED for SPDL1 Gene

This gene is overexpressed in Urinary Bladder (33.7), Testis (12.4), Bone (9.5), and Ovary (8.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SPDL1 Gene



SOURCE GeneReport for Unigene cluster for SPDL1 Gene Hs.368710

genes like me logo Genes that share expression patterns with SPDL1: view

Protein tissue co-expression partners for SPDL1 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SPDL1 Gene

Orthologs for SPDL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPDL1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia SPDL1 35
  • 87.4 (n)
  • 84.08 (a)
SPDL1 36
  • 84 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SPDL1 35
  • 90.22 (n)
  • 87.89 (a)
SPDL1 36
  • 88 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Spdl1 35
  • 77.34 (n)
  • 74.3 (a)
Spdl1 16
Spdl1 36
  • 74 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia SPDL1 35
  • 99.39 (n)
  • 99.01 (a)
SPDL1 36
  • 99 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia Spdl1 35
  • 78.28 (n)
  • 74.41 (a)
oppossum
(Monodelphis domestica)
 Mammalia SPDL1 36
  • 67 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves CCDC99 35
  • 66.94 (n)
  • 60.83 (a)
SPDL1 36
  • 59 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SPDL1 36
  • 53 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia spdl1 35
  • 61.28 (n)
  • 56.67 (a)
African clawed frog
(Xenopus laevis)
 Amphibia Xl.9016 35
zebrafish
(Danio rerio)
 Actinopterygii zgc:171223 35
  • 57.07 (n)
  • 50.96 (a)
SPDL1 36
  • 46 (a)
 OneToOne
sea squirt
(Ciona savignyi)
 Ascidiacea -- 36
  • 25 (a)
 OneToOne
Species with no ortholog for SPDL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPDL1 Gene

ENSEMBL:
Gene Tree for SPDL1 (if available)
TreeFam:
Gene Tree for SPDL1 (if available)

Paralogs for SPDL1 Gene

No data available for Paralogs for SPDL1 Gene

Variants for SPDL1 Gene

Sequence variations from dbSNP and Humsavar for SPDL1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs3797713 - 169,601,477(+) CTATA(C/T)ACACA reference, missense
rs3777084 - 169,604,146(+) GAAAT(C/T)ACACC reference, missense
rs918512 -- 169,599,351(+) TGTGC(A/C)TGAAT intron-variant
rs1046999 -- 169,588,471(+) AAGAA(G/T)AGCGA reference, stop-gained
rs1047000 -- 169,588,474(+) AAGAG(C/T)GACTA reference, stop-gained

Variation tolerance for SPDL1 Gene

Residual Variation Intolerance Score: 93.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.24; 52.61% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPDL1 Gene

Human Gene Mutation Database (HGMD)
SPDL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPDL1 Gene

Disorders for SPDL1 Gene

Relevant External Links for SPDL1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPDL1

No disorders were found for SPDL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPDL1 Gene

Publications for SPDL1 Gene

  1. Spindly/CCDC99 is required for efficient chromosome congression and mitotic checkpoint regulation. (PMID: 20427577) Barisic M. … Geley S. (Mol. Biol. Cell 2010) 2 3 67
  2. Preventing farnesylation of the dynein adaptor Spindly contributes to the mitotic defects caused by farnesyltransferase inhibitors. (PMID: 25808490) Holland A.J. … Gassmann R. (Mol. Biol. Cell 2015) 3
  3. A novel role of farnesylation in targeting a mitotic checkpoint protein, human Spindly, to kinetochores. (PMID: 25825516) Moudgil D.K. … Chan G.K. (J. Cell Biol. 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3

Products for SPDL1 Gene

Sources for SPDL1 Gene

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