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Aliases for SPCS2P3 Gene

Subcategory (RNA class) for SPCS2P3 Gene

antisense

Aliases for SPCS2P3 Gene

  • Signal Peptidase Complex Subunit 2 Homolog (S. Cerevisiae) Pseudogene 3 2 3 5

External Ids for SPCS2P3 Gene

ORGUL Members for SPCS2P3 Gene

Summaries for SPCS2P3 Gene

GeneCards Summary for SPCS2P3 Gene

SPCS2P3 (Signal Peptidase Complex Subunit 2 Homolog (S. Cerevisiae) Pseudogene 3) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for SPCS2P3 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for SPCS2P3

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SPCS2P3 Gene

Genomics for SPCS2P3 Gene

Regulatory Elements for SPCS2P3 Gene

Enhancers for SPCS2P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G000819 0.5 ENCODE 0.7 +3.9 3899 1.1 CTCF ZBTB33 HNF4A RAD21 SPCS2P3 PIR31891
GH05G000797 0.6 dbSUPER 0.4 -15.8 -15830 6.7 ZNF362 FOXA2 ATF2 RAD21 ZFP69B ARID3A GLIS1 TRIM24 WT1 BRD9 ZDHHC11 SLC9A3-AS1 TPPP PIR60694 GC05P000794 SPCS2P3
GH05G000799 0.6 dbSUPER 0.4 -15.5 -15540 3.2 ZFP69B FOXA2 ARID3A GLIS1 ATF2 WT1 RAD21 ZDHHC11 TPPP GC05P000794 PIR60694 SPCS2P3
GH05G000800 0.6 dbSUPER 0.4 -16.2 -16222 5.4 ZNF362 FOXA2 ATF2 RAD21 ZFP69B ARID3A GLIS1 WT1 BRD9 ZDHHC11 SLC9A3-AS1 TPPP GC05P000794 PIR60694 SPCS2P3
GH05G000801 0.6 dbSUPER 0.4 -15.6 -15646 6.5 ZNF362 FOXA2 ATF2 RAD21 ZFP69B ARID3A GLIS1 TRIM24 WT1 BRD9 ZDHHC11 SLC9A3-AS1 TPPP GC05P000794 PIR60694 SPCS2P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPCS2P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPCS2P3 Gene

Chromosome:
5
Start:
816,346 bp from pter
End:
817,001 bp from pter
Size:
656 bases
Orientation:
Plus strand

Genomic View for SPCS2P3 Gene

Genes around SPCS2P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPCS2P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPCS2P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPCS2P3 Gene

ORGUL Member Location for SPCS2P3 Gene

ORGUL Member Location for SPCS2P3 gene

Proteins for SPCS2P3 Gene

Post-translational modifications for SPCS2P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPCS2P3 Gene

Domains & Families for SPCS2P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPCS2P3 Gene

Function for SPCS2P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPCS2P3 Gene

Localization for SPCS2P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPCS2P3 Gene

Pathways & Interactions for SPCS2P3 Gene

SuperPathways for SPCS2P3 Gene

No Data Available

Interacting Proteins for SPCS2P3 Gene

Gene Ontology (GO) - Biological Process for SPCS2P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPCS2P3 Gene

Transcripts for SPCS2P3 Gene

fRNAdb Secondary structures for SPCS2P3 Gene

  • FR144057

mRNA/cDNA for SPCS2P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPCS2P3 Gene

No ASD Table

Relevant External Links for SPCS2P3 Gene

GeneLoc Exon Structure for
SPCS2P3
ECgene alternative splicing isoforms for
SPCS2P3

Expression for SPCS2P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPCS2P3 Gene

mRNA differential expression in normal tissues according to GTEx for SPCS2P3 Gene

This gene is overexpressed in Testis (x6.1) and Brain - Cerebellum (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of SPCS2P3 Gene:

SPCS2P3
genes like me logo Genes that share expression patterns with SPCS2P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPCS2P3 Gene

Orthologs for SPCS2P3 Gene

Evolution for SPCS2P3 Gene

ENSEMBL:
Gene Tree for SPCS2P3 (if available)
TreeFam:
Gene Tree for SPCS2P3 (if available)

No data available for Orthologs for SPCS2P3 Gene

Paralogs for SPCS2P3 Gene

No data available for Paralogs for SPCS2P3 Gene

Variants for SPCS2P3 Gene

Relevant External Links for SPCS2P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPCS2P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPCS2P3 Gene

Disorders for SPCS2P3 Gene

No disorders were found for SPCS2P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPCS2P3 Gene

Publications for SPCS2P3 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for SPCS2P3 Gene

Sources for SPCS2P3 Gene

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