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Aliases for SPATC1L Gene

Aliases for SPATC1L Gene

  • Spermatogenesis And Centriole Associated 1-Like 2 3 5
  • Spermatogenesis And Centriole-Associated Protein 1-Like Protein 3 4
  • Speriolin-Like Protein 2 3
  • C21orf56 3 4
  • Chromosome 21 Open Reading Frame 56 2

External Ids for SPATC1L Gene

Previous HGNC Symbols for SPATC1L Gene

  • C21orf56

Previous GeneCards Identifiers for SPATC1L Gene

  • GC21M047582
  • GC21M046163
  • GC21M046170
  • GC21M046175
  • GC21M046177

Summaries for SPATC1L Gene

GeneCards Summary for SPATC1L Gene

SPATC1L (Spermatogenesis And Centriole Associated 1-Like) is a Protein Coding gene. An important paralog of this gene is SPATC1.

Gene Wiki entry for SPATC1L Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATC1L Gene

Genomics for SPATC1L Gene

Regulatory Elements for SPATC1L Gene

Enhancers for SPATC1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F046182 0.5 ENCODE 51.2 +1.1 1067 4.1 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A FOS KLF13 CEBPZ NFYC SPATC1L MCM3AP YBEY MCM3AP-AS1 ENSG00000228137 LOC105372842 FTCD LSS PRMT2 ENSG00000228404
GH21F046319 0.2 ENCODE 28.9 -138.2 -138181 6.7 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 MCM3AP-AS1 ENSG00000228137 MCM3AP SPATC1L YBEY ENSG00000227438 DSTNP1 ENSG00000228235 LSS ENSG00000223901
GH21F046152 1 Ensembl ENCODE 27.1 +31.7 31670 2.2 ATF1 ARID4B DMAP1 ZNF48 YY1 GLIS2 ELK1 ZNF202 ZNF263 MXD4 MCM3AP SPATC1L ENSG00000228137 MCM3AP-AS1 FTCD YBEY FTCD-AS1
GH21F046225 0.4 ENCODE 21.9 -43.2 -43246 4.9 HDGF MLX ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS KLF13 ZNF263 YBEY SPATC1L MCM3AP-AS1 MCM3AP LSS PIR60990
GH21F046373 0.6 ENCODE 21.3 -191.0 -191047 4.9 ZIC2 MCM3AP YBEY SPATC1L LSS ENSG00000228137 C21orf58 PIR36884 GC21M046475
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPATC1L on UCSC Golden Path with GeneCards custom track

Promoters for SPATC1L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001841605 449 2201 YBX3 HDGF HDAC1 PKNOX1 ATF1 ARNT ARID4B DEAF1 SIN3A ZBTB40

Genomic Location for SPATC1L Gene

Chromosome:
21
Start:
46,161,148 bp from pter
End:
46,185,149 bp from pter
Size:
24,002 bases
Orientation:
Minus strand

Genomic View for SPATC1L Gene

Genes around SPATC1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATC1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATC1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATC1L Gene

Proteins for SPATC1L Gene

  • Protein details for SPATC1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0A9-SPC1L_HUMAN
    Recommended name:
    Speriolin-like protein
    Protein Accession:
    Q9H0A9
    Secondary Accessions:
    • B4E323
    • Q52LS9
    • Q6FIH5
    • Q6P0L3
    • Q9NSE5

    Protein attributes for SPATC1L Gene

    Size:
    340 amino acids
    Molecular mass:
    37613 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Highly variable expression among individuals is associated with differential sensitivity to the DNA alkylating agent N-methyl-N-nitro-N-nitrosoguanidine (MNNG), decreased expression being associated with increased sensitivity.
    SequenceCaution:
    • Sequence=BAA95497.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for SPATC1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATC1L Gene

Post-translational modifications for SPATC1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATC1L Gene

No data available for DME Specific Peptides for SPATC1L Gene

Domains & Families for SPATC1L Gene

Protein Domains for SPATC1L Gene

Graphical View of Domain Structure for InterPro Entry

Q9H0A9

UniProtKB/Swiss-Prot:

SPC1L_HUMAN :
  • Belongs to the speriolin family.
Family:
  • Belongs to the speriolin family.
genes like me logo Genes that share domains with SPATC1L: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATC1L Gene

Function for SPATC1L Gene

Gene Ontology (GO) - Molecular Function for SPATC1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with SPATC1L: view
genes like me logo Genes that share phenotypes with SPATC1L: view

Animal Model Products

miRNA for SPATC1L Gene

miRTarBase miRNAs that target SPATC1L

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SPATC1L Gene

Localization for SPATC1L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPATC1L Gene COMPARTMENTS Subcellular localization image for SPATC1L gene
Compartment Confidence
cytosol 3
nucleus 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for SPATC1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005813 centrosome IBA --
genes like me logo Genes that share ontologies with SPATC1L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SPATC1L Gene

Pathways & Interactions for SPATC1L Gene

SuperPathways for SPATC1L Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPATC1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with SPATC1L: view

No data available for Pathways by source and SIGNOR curated interactions for SPATC1L Gene

Transcripts for SPATC1L Gene

Unigene Clusters for SPATC1L Gene

Spermatogenesis and centriole associated 1-like:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATC1L Gene

No ASD Table

Relevant External Links for SPATC1L Gene

GeneLoc Exon Structure for
SPATC1L
ECgene alternative splicing isoforms for
SPATC1L

Expression for SPATC1L Gene

mRNA expression in normal human tissues for SPATC1L Gene

mRNA differential expression in normal tissues according to GTEx for SPATC1L Gene

This gene is overexpressed in Testis (x5.0).

Protein differential expression in normal tissues from HIPED for SPATC1L Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SPATC1L Gene



Protein tissue co-expression partners for SPATC1L Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SPATC1L Gene:

SPATC1L

SOURCE GeneReport for Unigene cluster for SPATC1L Gene:

Hs.381214
genes like me logo Genes that share expression patterns with SPATC1L: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATC1L Gene

Orthologs for SPATC1L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATC1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATC1L 34 35
  • 98.33 (n)
dog
(Canis familiaris)
Mammalia SPATC1L 34 35
  • 85.74 (n)
cow
(Bos Taurus)
Mammalia SPATC1L 34
  • 85.6 (n)
C1H21ORF56 35
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Spatc1l 34 16 35
  • 82.1 (n)
rat
(Rattus norvegicus)
Mammalia Spatc1l 34
  • 82.07 (n)
oppossum
(Monodelphis domestica)
Mammalia SPATC1L 35
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SPATC1L 35
  • 40 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 27 (a)
OneToMany
Species where no ortholog for SPATC1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATC1L Gene

ENSEMBL:
Gene Tree for SPATC1L (if available)
TreeFam:
Gene Tree for SPATC1L (if available)

Paralogs for SPATC1L Gene

Paralogs for SPATC1L Gene

(1) SIMAP similar genes for SPATC1L Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPATC1L: view

Variants for SPATC1L Gene

Sequence variations from dbSNP and Humsavar for SPATC1L Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs10188 -- 46,161,305(-) TGCGC(A/G)TCCCC utr-variant-3-prime
rs10540689 -- 46,179,089(+) AAAAA(-/AAAT)TTTTA intron-variant
rs10713326 -- 46,171,445(+) AAAAA(-/A)TGTGC intron-variant
rs111256218 -- 46,183,875(+) GGAGA(C/T)CAGCC intron-variant
rs111340612 -- 46,167,443(+) CAGAG(A/C)AGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPATC1L Gene

Variant ID Type Subtype PubMed ID
dgv2515e59 CNV duplication 20981092
dgv7922n54 CNV gain 21841781
dgv7923n54 CNV loss 21841781
dgv7924n54 CNV loss 21841781
dgv7925n54 CNV loss 21841781
esv1674225 CNV deletion 17803354
esv2076361 CNV deletion 18987734
esv25247 CNV loss 19812545
esv25460 CNV loss 19812545
esv2723902 CNV deletion 23290073
esv2723903 CNV deletion 23290073
esv3427650 CNV duplication 20981092
esv3647163 CNV loss 21293372
nsv1060978 CNV gain 25217958
nsv1061087 CNV loss 25217958
nsv1073141 CNV deletion 25765185
nsv1125228 CNV insertion 24896259
nsv187209 CNV deletion 16902084
nsv3545 CNV insertion 18451855
nsv470910 CNV gain 18288195
nsv470911 CNV loss 18288195
nsv509804 CNV insertion 20534489
nsv519904 CNV loss 19592680
nsv525728 CNV loss 19592680
nsv587952 CNV loss 21841781
nsv587954 CNV loss 21841781
nsv587956 CNV loss 21841781
nsv587957 CNV gain+loss 21841781
nsv587964 CNV loss 21841781
nsv953658 CNV deletion 24416366

Variation tolerance for SPATC1L Gene

Residual Variation Intolerance Score: 88.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.07; 87.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPATC1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATC1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPATC1L Gene

Disorders for SPATC1L Gene

Relevant External Links for SPATC1L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATC1L

No disorders were found for SPATC1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATC1L Gene

Publications for SPATC1L Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 64
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for SPATC1L Gene

Sources for SPATC1L Gene

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