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SPATC1 Gene

protein-coding   GIFtS: 42
GCID: GC08P145086

Spermatogenesis And Centriole Associated 1

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Spermatogenesis And Centriole Associated 11 2     SPATA152 3
Spermatogenesis And Centriole-Associated Protein 12 3     speriolin2
Spermatogenesis-Associated Protein 152 3     SPRN3
Spermatogenic Cell-Specific Cdc20-Binding Protein2 3     

External Ids:    HGNC: 305101   Entrez Gene: 3756862   Ensembl: ENSG000001865837   OMIM: 6108745   UniProtKB: Q76KD63   

Export aliases for SPATC1 gene to outside databases

Previous GC identifer: GC08P145159


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SPATC1 Gene:
SPATC1 (spermatogenesis and centriole associated 1) is a protein-coding gene. GO annotations related to this gene include gamma-tubulin binding. An important paralog of this gene is SPATC1L.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000008.10  NT_008046.17  NC_018919.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SPATC1 gene promoter:
         Elk-1   MyoD   Tal-1beta   E47   AREB6   POU2F1   HFH-1   POU2F1a   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSPATC1 promoter sequence
   Search Chromatin IP Primers for SPATC1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPATC1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.3   Ensembl cytogenetic band:  8q24.3   HGNC cytogenetic band: 8q24.3

SPATC1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPATC1 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P145086:  view genomic region     (about GC identifiers)

Start:
145,086,582 bp from pter      End:
145,102,015 bp from pter
Size:
15,434 bases      Orientation:
plus strand

1 alternative location:
Chr8+,NW_003315923 351,059-385,759     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: SPERI_HUMAN, Q76KD6 (See protein sequence)
Recommended Name: Speriolin  
Size: 591 amino acids; 62399 Da
Subunit: Found in a complex with CDC20, CDC27 and TUBG1. Interacts with CDC20 (By similarity)
Sequence caution: Sequence=AAH50390.1; Type=Erroneous initiation; Sequence=AAH53547.1; Type=Erroneous initiation;
Secondary accessions: B4DWW9 Q5U5I8 Q7Z6L7
Alternative splicing: 2 isoforms:  Q76KD6-1   Q76KD6-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SPATC1: NX_Q76KD6

Explore proteomics data for SPATC1 at MOPED


See SPATC1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts): 
NP_001127846.1  NP_940974.2  

ENSEMBL proteins: 
 ENSP00000366690   ENSP00000387613  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR026715 SPATC1

Graphical View of Domain Structure for InterPro Entry Q76KD6

ProtoNet protein and cluster: Q76KD6

UniProtKB/Swiss-Prot: SPERI_HUMAN, Q76KD6
Similarity: Belongs to the speriolin family


Find genes that share domains with SPATC1           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
GO:0043015gamma-tubulin binding IEA--
     
Find genes that share ontologies with SPATC1           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
SPERI_HUMAN, Q76KD6: Cytoplasm (By similarity). Cytoplasm, cytoskeleton, microtubule organizing center,
centrosome (By similarity). Note=Colocalizes with the centrosomal pericentrin protein PCNT1 (By similarity).
Located in the connecting piece of sperm
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytoskeleton5
cytosol2
nucleus2
golgi apparatus1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IEA--
GO:0005813centrosome IDA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SPATC1
Interactions:

    Search GeneGlobe Interaction Network for SPATC1

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

4 Interacting proteins for SPATC1 (Q76KD63 ENSP000003666904) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
CDC20Q128343, ENSP000003084504I2D: score=2 STRING: ENSP00000308450
TUBG1P232583, ENSP000002514134I2D: score=2 STRING: ENSP00000251413
CDC27P302603I2D: score=1 
--ENSP000003992554STRING: ENSP00000399255
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for SPATC1 (SPERI)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for SPATC1 gene (2 alternative transcripts): 
NM_001134374.1  NM_198572.2  

Unigene Cluster for SPATC1:

Spermatogenesis and centriole associated 1
Hs.97726  [show with all ESTs]
Unigene Representative Sequence: NM_198572
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000377470(uc011lkw.2 uc011lkx.2) ENST00000447830
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Additional mRNA sequence: 

AB092352.1 AK301710.1 BC050390.1 BC053547.1 

3 DOTS entries:

DT.97781691  DT.40130677  DT.451900 

16 AceView cDNA sequences:

NM_198572 AB092352 BC050390 BX119104 AI004293 BC053547 BI520067 AA400090 
BM552885 BM563215 AI026805 AA905913 AI674112 AA401380 AA400693 BG720852 

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for SPATC1    About this scheme

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b
SP1:                                          
SP2:                          -               


ECgene alternative splicing isoforms for SPATC1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SPATC1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TTCATCTGGT
SPATC1 Expression
About this image


SPATC1 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Eye (Sensory Organs)
         Retina
 
 Testis (Reproductive System)
SPATC1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SPATC1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.97726

UniProtKB/Swiss-Prot: SPERI_HUMAN, Q76KD6
Tissue specificity: Detected only in testis

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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for SPATC1 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Spatc11 , 5 spermatogenesis and centriole associated 11, 5 77.83(n)1
72.81(a)1
  15 (35.63 cM)5
742811  NM_028852.11  NP_083128.11 
 762680895 
lizard
(Anolis carolinensis)
Reptilia --
--
Uncharacterized protein
54(a)
20(a)
1 ↔ many
1 ↔ many
GL343861.1(55301-62142)
GL343861.1(78022-97962)


ENSEMBL Gene Tree for SPATC1 (if available)
TreeFam Gene Tree for SPATC1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for SPATC1 gene
SPATC1L2  
1 SIMAP similar gene for SPATC1 using alignment to 1 protein entry:     SPERI_HUMAN:
SPATC1L

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1 Pseudogenes.org Pseudogene for SPATC1
PGOHUM00000249526


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for SPATC1 (see all 395)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 8 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1814409381,2
--145084582(+) CAGCCA/GGAGTT 2 -- us2k10--------
rs1846030511,2
--145085106(+) TTTTTA/TAAAAG 2 -- us2k10--------
rs1885744641,2
--145085194(+) ATCACA/GTCTAT 2 -- us2k10--------
rs1388900341,2
C--145085200(+) TCTATC/TAGACG 2 -- us2k10--------
rs1815213471,2
--145085204(+) TTAGAC/GGTCTA 2 -- us2k10--------
rs2012713931,2
C--145085215(+) ATAGAC/TGTGAT 2 -- us2k10--------
rs1859029011,2
--145085287(+) CTGGAC/TACTAT 2 -- us2k10--------
rs1911895351,2
--145085334(+) CTGACC/TGCATC 2 -- us2k10--------
rs592194321,2
C,F--145085343(+) TCAACC/TCAAGA 2 -- us2k13Minor allele frequency- T:0.09WA CSA 122
rs1820948571,2
--145085355(+) GCTAAC/TAGTGA 2 -- us2k10--------

HapMap Linkage Disequilibrium report for SPATC1 (145086582 - 145102015 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for SPATC1 (see all 21):    About this table    
Variant IDTypeSubtypePubMed ID
esv1010431CNV Insertion20482838
nsv6446CNV Insertion18451855
nsv891809CNV Loss21882294
dgv7949n71CNV Loss21882294
dgv7950n71CNV Loss21882294
dgv906n27CNV Loss19166990
dgv7955n71CNV Loss21882294
nsv891807CNV Loss21882294
dgv7954n71CNV Loss21882294
dgv7940n71CNV Loss21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610874    OMIM disorders: --


Find genes that share disorders with SPATC1           About GenesLikeMe


Export disorders for SPATC1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SPATC1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with SPATC1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Speriolin is a novel spermatogenic cell-specific centrosomal protein associated with the seventh WD motif of Cdc20. (PubMed id 15280373)1, 2, 3 Goto M. and Eddy E.M. (J. Biol. Chem. 2004)
  2. Speriolin is a novel human and mouse sperm centrosome protein. (PubMed id 20542897)1, 2 Goto M.... Eddy E.M. (Hum. Reprod. 2010)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  4. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)2 Nusbaum C....Lander E.S. (Nature 2006)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 375686 HGNC: 30510 AceView: SPERIOLIN Ensembl:ENSG00000186583 euGenes: HUgn375686
ECgene: SPATC1 H-InvDB: SPATC1

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SPATC1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SPATC1 gene:
Search GeneIP for patents involving SPATC1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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 OriGene Custom Antibody Services for SPATC1   OriGene Custom Protein Services for SPATC1  

 
 
 Block miRNA regulation of human, mouse, rat SPATC1 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing SPATC1
 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPATC1 Predesigned siRNA for gene silencing in human, mouse, rat SPATC1
 QuantiFast Probe-based Assays in human, mouse, rat SPATC1 QuantiTect SYBR Green Assays in human, mouse, rat SPATC1
 Custom PCR Arrays for SPATC1 Search Chromatin IP Primers for SPATC1
 Pre-validated RT2 qPCR Primer Assay in human, mouse / rat SPATC1  Search GeneGlobe Interaction Network for SPATC1
 Regulatory tfbs in SPATC1 promoter
 GenScript Custom Purified and Recombinant Proteins Services for SPATC1 GenScript cDNA clones with any tag delivered in your preferred vector for SPATC1
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 Vector-based siRNA and miRNA, Ready for Transfection Gene Mutant Library, Variants up to 10^11
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 Search Tocris compounds for SPATC1 (SPERI)
 Browse Sino Biological Proteins
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Tissue Slides
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 See all of Abcam's Antibodies, Kits and Proteins for SPATC1
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 Browse ESI BIO Cell Lines and PureStem Progenitors for SPATC1
 Gene Synthesis
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 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPATC1
 SwitchGear 3'UTR luciferase reporter plasmids for SPATC1
 SwitchGear Promoter luciferase reporter plasmids for SPATC1
 Search ThermoFisher Antibodies for SPATC1
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SPATC1
 Browse compounds at ApexBio
 Search Addgene for plasmids for SPATC1
  Search eBioscience for proteins for SPATC1
  Search eBioscience for elisas for SPATC1
  eBioscience FlowRNA Probe Sets
 genOway: Develop your customized and physiologically relevant rodent model for SPATC1
 antibodies-online antibodies for SPATC1 (13 products)
 antibodies-online kits for SPATC1 (4 products)
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 antibodies-online proteins for SPATC1 (2 products)
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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