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Aliases for SPATA8-AS1 Gene

Subcategory (RNA class) for SPATA8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPATA8-AS1 Gene

  • SPATA8 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SPATA8-AS1 Gene

Previous GeneCards Identifiers for SPATA8-AS1 Gene

  • GC15M098077
  • GC15M098327

Summaries for SPATA8-AS1 Gene

GeneCards Summary for SPATA8-AS1 Gene

SPATA8-AS1 (SPATA8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA8-AS1 Gene

Genomics for SPATA8-AS1 Gene

Genomic Location for SPATA8-AS1 Gene

Chromosome:
15
Start:
96,772,005 bp from pter
End:
96,783,337 bp from pter
Size:
11,333 bases
Orientation:
Minus strand

Genomic View for SPATA8-AS1 Gene

Genes around SPATA8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA8-AS1 Gene

No data available for Regulatory Elements for SPATA8-AS1 Gene

Proteins for SPATA8-AS1 Gene

Post-translational modifications for SPATA8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA8-AS1 Gene

Domains & Families for SPATA8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA8-AS1 Gene

Function for SPATA8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA8-AS1 Gene

Localization for SPATA8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA8-AS1 Gene

Pathways & Interactions for SPATA8-AS1 Gene

SuperPathways for SPATA8-AS1 Gene

No Data Available

Interacting Proteins for SPATA8-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA8-AS1 Gene

Drugs & Compounds for SPATA8-AS1 Gene

No Compound Related Data Available

Transcripts for SPATA8-AS1 Gene

mRNA/cDNA for SPATA8-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA8-AS1 Gene

No ASD Table

Relevant External Links for SPATA8-AS1 Gene

GeneLoc Exon Structure for
SPATA8-AS1
ECgene alternative splicing isoforms for
SPATA8-AS1

Expression for SPATA8-AS1 Gene

mRNA expression in normal human tissues for SPATA8-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA8-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with SPATA8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA8-AS1 Gene

Orthologs for SPATA8-AS1 Gene

Evolution for SPATA8-AS1 Gene

ENSEMBL:
Gene Tree for SPATA8-AS1 (if available)
TreeFam:
Gene Tree for SPATA8-AS1 (if available)

No data available for Orthologs for SPATA8-AS1 Gene

Paralogs for SPATA8-AS1 Gene

No data available for Paralogs for SPATA8-AS1 Gene

Variants for SPATA8-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA8-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs4491473 -- 96,779,729(+) CCAGG(A/G)CCCAT intron-variant
rs11452854 -- 96,774,842(+) TATAT(-/A/T)ATTTT intron-variant
rs4965133 -- 96,771,795(+) CAGGT(A/C)CCAGC downstream-variant-500B
rs4965134 -- 96,773,281(+) ACGGC(A/G)GGGTT intron-variant
rs12324484 -- 96,772,725(+) AAAGG(C/T)CAGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPATA8-AS1 Gene

Variant ID Type Subtype PubMed ID
esv275145 CNV loss 21479260
esv2763122 CNV loss 21179565
esv3306325 CNV mobile element insertion 20981092
esv3352681 CNV insertion 20981092
esv3393613 CNV insertion 20981092
esv3892734 CNV loss 25118596
nsv522924 CNV gain 19592680

Relevant External Links for SPATA8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA8-AS1 Gene

Disorders for SPATA8-AS1 Gene

Relevant External Links for SPATA8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA8-AS1

No disorders were found for SPATA8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA8-AS1 Gene

Publications for SPATA8-AS1 Gene

No publications were found for SPATA8-AS1 Gene.

Products for SPATA8-AS1 Gene

Sources for SPATA8-AS1 Gene

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