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Aliases for SPATA6L Gene

Aliases for SPATA6L Gene

  • Spermatogenesis Associated 6-Like 2 3
  • C9orf68 3 4
  • Spermatogenesis Associated 6-Like Protein 3
  • Chromosome 9 Open Reading Frame 68 2
  • BA6J24.2 3

External Ids for SPATA6L Gene

Previous HGNC Symbols for SPATA6L Gene

  • C9orf68

Summaries for SPATA6L Gene

GeneCards Summary for SPATA6L Gene

SPATA6L (Spermatogenesis Associated 6-Like) is a Protein Coding gene. An important paralog of this gene is SPATA6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA6L Gene

Genomics for SPATA6L Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SPATA6L Gene

Start:
4,553,386 bp from pter
End:
4,666,674 bp from pter
Size:
113,289 bases
Orientation:
Minus strand

Genomic View for SPATA6L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA6L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA6L Gene

No data available for Regulatory Elements for SPATA6L Gene

Proteins for SPATA6L Gene

  • Protein details for SPATA6L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4H0-SPA6L_HUMAN
    Recommended name:
    Spermatogenesis associated 6-like protein
    Protein Accession:
    Q8N4H0
    Secondary Accessions:
    • B4DIY4
    • Q5JVJ5
    • Q8IY90

    Protein attributes for SPATA6L Gene

    Size:
    392 amino acids
    Molecular mass:
    45058 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA6L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA6L Gene

Proteomics data for SPATA6L Gene at MOPED

Post-translational modifications for SPATA6L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA6L Gene

No data available for DME Specific Peptides for SPATA6L Gene

Domains for SPATA6L Gene

Protein Domains for SPATA6L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8N4H0

UniProtKB/Swiss-Prot:

SPA6L_HUMAN :
  • Q8N4H0
Family:
  • Belongs to the SPATA6 family.
genes like me logo Genes that share domains with SPATA6L: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA6L Gene

Function for SPATA6L Gene

Phenotypes for SPATA6L Gene

GenomeRNAi human phenotypes for SPATA6L:
genes like me logo Genes that share phenotypes with SPATA6L: view

Animal Model Products

CRISPR Products

miRNA for SPATA6L Gene

miRTarBase miRNAs that target SPATA6L

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for SPATA6L Gene

Localization for SPATA6L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA6L Gene

Pathways for SPATA6L Gene

SuperPathways for SPATA6L Gene

No Data Available

Interacting Proteins for SPATA6L Gene

Gene Ontology (GO) - Biological Process for SPATA6L Gene

None

No data available for Pathways by source for SPATA6L Gene

Transcripts for SPATA6L Gene

Unigene Clusters for SPATA6L Gene

Spermatogenesis associated 6-like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA6L

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SPATA6L
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA6L Gene

No ASD Table

Relevant External Links for SPATA6L Gene

GeneLoc Exon Structure for
SPATA6L
ECgene alternative splicing isoforms for
SPATA6L

Expression for SPATA6L Gene

mRNA expression in normal human tissues for SPATA6L Gene

mRNA differential expression in normal tissues according to GTEx for SPATA6L Gene

This gene is overexpressed in Liver (4.6) and Testis (4.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA6L Gene

SOURCE GeneReport for Unigene cluster for SPATA6L Gene Hs.179615

genes like me logo Genes that share expressions with SPATA6L: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA6L Gene

Orthologs for SPATA6L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATA6L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATA6L 35
  • 99.3 (n)
  • 99.1 (a)
SPATA6L 36
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SPATA6L 35
  • 85.53 (n)
  • 76.05 (a)
SPATA6L 36
  • 62 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPATA6L 35
  • 85.43 (n)
  • 76.95 (a)
SPATA6L 36
  • 60 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4430402I18Rik 36
  • 45 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SPATA6L 36
  • 26 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 11 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SPATA6L 36
  • 26 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.10830 35
zebrafish
(Danio rerio)
Actinopterygii -- 35
spata6l 36
  • 22 (a)
OneToOne
Species with no ortholog for SPATA6L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPATA6L Gene

ENSEMBL:
Gene Tree for SPATA6L (if available)
TreeFam:
Gene Tree for SPATA6L (if available)

Paralogs for SPATA6L Gene

Paralogs for SPATA6L Gene

Selected SIMAP similar genes for SPATA6L Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with SPATA6L: view

Variants for SPATA6L Gene

Sequence variations from dbSNP and Humsavar for SPATA6L Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs2771 -- 4,598,379(+) TCACA(A/G)AATTA utr-variant-3-prime, intron-variant
rs159915 -- 4,588,115(-) aagtg(A/T)tctgc intron-variant
rs159916 -- 4,588,635(-) CTACC(C/T)AGTAT intron-variant
rs182476 -- 4,639,515(+) AGTCT(C/T)TCTGG intron-variant
rs184204 -- 4,588,577(-) TCTCC(A/G)TGGGA intron-variant

Relevant External Links for SPATA6L Gene

HapMap Linkage Disequilibrium report
SPATA6L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA6L Gene

Disorders for SPATA6L Gene

No disorders were found for SPATA6L Gene.

No data available for UniProtKB/Swiss-Prot for SPATA6L Gene

Publications for SPATA6L Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for SPATA6L Gene

Sources for SPATA6L Gene

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