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Aliases for SPATA45 Gene

Aliases for SPATA45 Gene

  • Spermatogenesis Associated 45 2 3 5
  • C1orf227 3 4
  • Spermatogenesis-Associated Protein 45 3
  • Chromosome 1 Open Reading Frame 227 2
  • UPF0732 Protein C1orf227 3

External Ids for SPATA45 Gene

Previous HGNC Symbols for SPATA45 Gene

  • C1orf227

Previous GeneCards Identifiers for SPATA45 Gene

  • GC01M213004

Summaries for SPATA45 Gene

GeneCards Summary for SPATA45 Gene

SPATA45 (Spermatogenesis Associated 45) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA45 Gene

Genomics for SPATA45 Gene

Regulatory Elements for SPATA45 Gene

Enhancers for SPATA45 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F212856 1.2 ENCODE 10.9 -11.4 -11370 4.5 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 FLVCR1-AS1 FLVCR1 ANGEL2 TATDN3 SPATA45 GC01M212767
GH01F212664 1.4 FANTOM5 ENCODE 9 +180.7 180706 4.2 HDGF ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF548 FOS ZNF263 SP3 LOC105372907 ENSG00000225233 LOC105372904 FAM71A LOC102723727 SPATA45 PPP2R5A ATF3 BATF3 ANGEL2
GH01F212793 1 ENCODE 10.8 +53.1 53121 1.4 HDGF PKNOX1 ATF1 ARNT GATA2 CBX5 ZNF143 FOS KLF13 ZNF263 FLVCR1-AS1 TATDN3 FLVCR1 RPL21P28 SPATA45 RPS5P4
GH01F212698 1.1 ENCODE 9.1 +147.3 147309 2.8 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 CBX5 ZNF143 FLVCR1-AS1 BATF3 SPATA45 VASH2 PIR52879
GH01F212906 1.1 FANTOM5 Ensembl ENCODE 8.3 -61.1 -61069 4.2 POLR2A ZNF584 SUPT20H PRDM1 ZKSCAN1 FLVCR1-AS1 TATDN3 FLVCR1 SPATA45 ENSG00000282718 GC01M212767
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA45 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA45 Gene

Chromosome:
1
Start:
212,830,141 bp from pter
End:
212,847,649 bp from pter
Size:
17,509 bases
Orientation:
Minus strand

Genomic View for SPATA45 Gene

Genes around SPATA45 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA45 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA45 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA45 Gene

Proteins for SPATA45 Gene

  • Protein details for SPATA45 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q537H7-SPT45_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 45
    Protein Accession:
    Q537H7

    Protein attributes for SPATA45 Gene

    Size:
    98 amino acids
    Molecular mass:
    11356 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPATA45 Gene

Post-translational modifications for SPATA45 Gene

No Post-translational modifications

Other Protein References for SPATA45 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA45 Gene

Domains & Families for SPATA45 Gene

Protein Domains for SPATA45 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SPATA45 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q537H7

UniProtKB/Swiss-Prot:

SPT45_HUMAN :
  • Belongs to the SPATA45 family.
Family:
  • Belongs to the SPATA45 family.
genes like me logo Genes that share domains with SPATA45: view

No data available for Gene Families for SPATA45 Gene

Function for SPATA45 Gene

genes like me logo Genes that share phenotypes with SPATA45: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA45 Gene

Localization for SPATA45 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPATA45 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPATA45 Gene

Pathways & Interactions for SPATA45 Gene

SuperPathways for SPATA45 Gene

No Data Available

Interacting Proteins for SPATA45 Gene

Gene Ontology (GO) - Biological Process for SPATA45 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA45 Gene

Transcripts for SPATA45 Gene

mRNA/cDNA for SPATA45 Gene

(1) REFSEQ mRNAs :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA45 Gene

No ASD Table

Relevant External Links for SPATA45 Gene

GeneLoc Exon Structure for
SPATA45
ECgene alternative splicing isoforms for
SPATA45

Expression for SPATA45 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA45 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SPATA45 Gene

This gene is overexpressed in Testis (x28.5).

NURSA nuclear receptor signaling pathways regulating expression of SPATA45 Gene:

SPATA45
genes like me logo Genes that share expression patterns with SPATA45: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA45 Gene

Orthologs for SPATA45 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPATA45 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATA45 34
  • 98.98 (n)
-- 35
  • 98 (a)
OneToMany
-- 35
  • 98 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SPATA45 34
  • 83.16 (n)
C16H1orf227 35
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPATA45 34
  • 82.65 (n)
mouse
(Mus musculus)
Mammalia 1700022P22Rik 34 35
  • 73.2 (n)
Spata45 16
rat
(Rattus norvegicus)
Mammalia LOC498316 34
  • 72.16 (n)
Species where no ortholog for SPATA45 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA45 Gene

ENSEMBL:
Gene Tree for SPATA45 (if available)
TreeFam:
Gene Tree for SPATA45 (if available)

Paralogs for SPATA45 Gene

No data available for Paralogs for SPATA45 Gene

Variants for SPATA45 Gene

Sequence variations from dbSNP and Humsavar for SPATA45 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10399914 -- 212,835,477(+) GAGAT(C/G)GTGCC intron-variant
rs10631608 -- 212,829,982(+) TCTCA(-/AAA)AAAAA downstream-variant-500B
rs10645815 -- 212,832,016(+) TTTTT(-/T/TT)GAGAC intron-variant
rs10746437 -- 212,843,218(+) tccag(C/G)ggcag intron-variant
rs10746438 -- 212,843,223(+) cggca(C/G)aggtt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPATA45 Gene

Variant ID Type Subtype PubMed ID
nsv8791 CNV loss 18304495
nsv826564 CNV loss 20364138
nsv549177 CNV loss 21841781
nsv514041 CNV loss 21397061
nsv508691 CNV deletion 20534489
nsv441735 CNV loss 18776908
nsv1160022 CNV deletion 26073780
esv3891115 CNV loss 25118596
esv3891104 CNV loss 25118596
esv3588756 CNV loss 21293372
esv3546210 CNV deletion 23714750
esv32562 CNV loss 17666407
esv2763825 CNV loss 21179565
esv2758997 CNV loss 17122850
esv2722506 CNV deletion 23290073
esv2672098 CNV deletion 23128226
esv24713 CNV loss 19812545
esv2421907 CNV deletion 20811451
dgv815n54 CNV loss 21841781
dgv814n54 CNV loss 21841781
dgv813n54 CNV loss 21841781
dgv812n54 CNV loss 21841781
dgv811n54 CNV loss 21841781
dgv810n54 CNV loss 21841781
dgv809n54 CNV loss 21841781
dgv808n54 CNV loss 21841781
dgv807n54 CNV loss 21841781
dgv571n100 CNV gain 25217958

Variation tolerance for SPATA45 Gene

Residual Variation Intolerance Score: 60.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.84; 58.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPATA45 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA45

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPATA45 Gene

Disorders for SPATA45 Gene

Relevant External Links for SPATA45

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA45

No disorders were found for SPATA45 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA45 Gene

Publications for SPATA45 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SPATA45 Gene

Sources for SPATA45 Gene

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